To cite qtl2pleio in publications use:

Boehm FJ, Chesler EJ, Yandell BS, Broman KW (2019). “Testing pleiotropy vs. separate QTL in multiparental populations.” G3, 9, 2317-2324. doi:10.1093/genetics/140.3.1111, https://academic.oup.com/g3journal/article-pdf/9/7/2317/40667800/g3journal2317.pdf, https://doi.org/10.1534/g3.119.400098.

Corresponding BibTeX entry:

  @Article{Boehm2019testing,
    title = {Testing pleiotropy vs. separate QTL in multiparental
      populations},
    author = {Frederick J. Boehm and Elissa J. Chesler and Brian S.
      Yandell and Karl W. Broman},
    journal = {G3},
    year = {2019},
    volume = {9},
    issue = {7},
    pages = {2317-2324},
    doi = {10.1093/genetics/140.3.1111},
    url = {https://doi.org/10.1534/g3.119.400098},
    eprint =
      {https://academic.oup.com/g3journal/article-pdf/9/7/2317/40667800/g3journal2317.pdf},
  }