76330cdc63bffed218130f8e760d4ea7 *DESCRIPTION
5d3ca0cb09289a2709131157c28ca3f6 *NAMESPACE
912f608c3b1f03140e1fce06fbb01a4a *NEWS.md
aa858c3681f564685a88067d55990177 *R/NCBI.R
7f3cab6337ff56da5aa9cfb19e11c3da *R/aln.R
2346fe77e544bad933964d1f17e86138 *R/bam2DNAStringSet.R
15d7c1bdb4f10d63634e4dc4d75c9c54 *R/consensus.R
533270f051c8c3bff1b6d557e44182e3 *R/fa_combine.R
9d342aaae20196bf2f024ee695f29c8f *R/fa_conversion.R
ccf3f59b71caee46fbedbf2e103acf9e *R/fas2phy.R
a300a306c43533b98d681c39c4813e60 *R/filter.R
9056ab6aefa1cb0efa53757fff507a77 *R/get_id.R
d7ecd320a2635ea515c986c16c41062f *R/hamming.R
5df7e331d2b8949048de104ac798c8cc *R/mega.r
656867518e418e1ad878083903f7e119 *R/phy2fas.R
d6a9274104f07f40aafa51001764d785 *R/phylip.R
46bb79386b47a35e04401fcd1c4b92e9 *R/read.R
7f68483b1a7abb78689a4a4988fca3f8 *R/rename.R
af43b0c6b025d88fc17641a185bd11d4 *R/renameTXT.R
248cb03b5f9d3cf4d04a0c9f9d54b8e8 *R/replaceInside.R
a70f89a1bce02119e9f2e811181d2d81 *R/seqlen.R
8f4fe203ab5e2280b9df62336010f602 *R/seqmagick-package.R
7978ee6794435592809c79d5b3d62257 *R/utilities.R
e76ed4f0af69e8206c7353601fe54ea5 *R/write.R
eda5628c965e94f27e8ed69942c8f099 *README.md
5084be1bfca194150506b2474c751e34 *build/vignette.rds
2749c0800fd7b1b3d11136dba1c49e7c *inst/doc/seqmagick.R
4f595e7f469fcf377e4db9bde3f9f34b *inst/doc/seqmagick.Rmd
4746971437fb2a07f24482e6e8b95f95 *inst/doc/seqmagick.html
86d45b02d7ac13a198998df915636469 *inst/extdata/AB115403.fa
c20a9ec9f005efffc27bc545c68b1851 *inst/extdata/AB115403.gb
b28bc1fb72a1f9d0468bc32cc1c1e6a7 *inst/extdata/HA.fas
3476fc1fa9db763670acb64323b687eb *inst/extdata/HA.phy
1774a89e7a9e714e83a9bbae3e152e43 *inst/extdata/mega/Chloroplast_Martin.meg
980e100fceda9db59bdec6861e2ce665 *inst/extdata/mega/Crab_rRNA.meg
58cf59c6e481d4d5f64ed9feb4ff4e83 *inst/extdata/mega/D-loop_Vigilant.meg
7541a43378680c074d83b4a73043ed7c *inst/extdata/mega/Drosophila_Adh.meg
9c54169deadf624d7ae4cca408860fba *man/bam2DNAStringSet.Rd
08dfb67b0b742a33f8b7d5ef2e37d2f5 *man/bam2DNAStringSet2.Rd
524f0104ca7ad9548c0d981ea5af8617 *man/bs_aln.Rd
c25a89a41c67620d3a5f33504ffc3f8a *man/bs_filter.Rd
2ab8a47949a4fc0c6c13f7a2bd964369 *man/bs_hamming.Rd
3bac639e82eae3b01e4ab0f9c9b0f165 *man/bs_rename.Rd
02dd8987825d8afbf24f1f908d173072 *man/consensus.Rd
3dfafc52922c266bfce4cde67e39aeec *man/download_genbank.Rd
53af7e4c5bebcd262fec44950d18d8cf *man/fa_combine.Rd
789a48bfe841de3d0403821582891c32 *man/fa_conversion.Rd
528147393e3cd8a6f75f71aeb95520b2 *man/fa_filter.Rd
7e20f84ec547e82dcdf1dda32a98e414 *man/fa_rename.Rd
01396e0a16cfabb3bb2a6eecac1075ec *man/fa_summary.Rd
172d8e4de03829d3370e9aaf8095401d *man/fa_write.Rd
01cf253abcfa82790ced474f789c5bc1 *man/fas2phy.Rd
7084f16534c2158e8301ed56c32b9996 *man/gb_read.Rd
6b43580830268f3bb6a889fa5a39cc7c *man/get_id.Rd
92052e1a1f7ac01b07f952d332f59370 *man/msa-read.Rd
8a0a49f48718de48d1a587634cb84db8 *man/ncbi_fa_read.Rd
2fff3d96884a823502f81e26469d9b5c *man/phy2fas.Rd
32b5ebde31763a7c2a220b3335848bd1 *man/phy_read.Rd
babd9ca1c39da2d725fbe258a652784f *man/phy_write.Rd
9c09224cd55169d632b6ade3843aa68a *man/renameTXT.Rd
48fe7cc8caf0864829f51dce34f62907 *man/replaceInside.Rd
d07007d61183d5ea425f02a0b6893c28 *man/seqlen.Rd
da7d4a823ada59f823eb21e2c4775246 *man/seqmagick-package.Rd
e079b4b7280488cf4cdb1f3278b1d35f *tests/testthat.R
ab81510aaca69afb088ff5f1062e02d7 *tests/testthat/test-guess_sequence_type.R
7463f8c3beb8ea32810f7bc7a8692ab3 *tests/testthat/test-read_write.R
a1bb62c5dd1b65195568dd82120e5423 *tests/testthat/test-rename.R
d0bcfb529a9c5b2e1ebb11e0b2c84919 *tests/testthat/test-summary.R
4f595e7f469fcf377e4db9bde3f9f34b *vignettes/seqmagick.Rmd
68b329da9893e34099c7d8ad5cb9c940 *vignettes/seqmagick.bib
