0fcfa9a63fa5ab48faf74aa903a8a3ea *DESCRIPTION
39bd1d8618c10343942aba4d2e2ba36c *NAMESPACE
19284d3cdd3d2a89961af0130535e6ed *R/data.R
0ec817e2589e37763ee8703d18be7de7 *R/docData.R
af54f53a941ce8e37649231b984a0417 *R/helpers.R
7783c48fd43805faa04c77c0b5ad3af7 *R/imputeAges.R
95a5772af7954214eedabd083834bd66 *R/mhChain.R
91ce6541fd120b4364838b3d3f64b808 *R/mhLoglikehood.r
5fc110fe5aec1c0915898506ac02df1e *R/outputHelpers.R
e02d7fd97f0548d99128d78e45b489ff *R/penetrance-package.R
3af5497a34b84a08a559e12e6cf42bd1 *R/penetranceMain.R
6cf917fd95e0d2f0af2cea001eb94a88 *R/priorElicitation.R
d65ee423778fa9d1360e909b98b8b91b *README.md
5d7b62c7c7529bbb796ae63df0f25e9d *build/vignette.rds
b415ca357873cf32a7f8d24748d55ada *data/out_sim.RData
04c10929ef37312dfc12649858c54966 *data/simulated_families.RData
028f779f778493c23940411491838981 *data/test_fam2.RData
a449203ed7e4bdd1bd316feae4402363 *inst/doc/simulation_study.R
56e18d1e52040b0c29738e19a038f544 *inst/doc/simulation_study.Rmd
ebdd49c3506c716aeeaf1cecc25e17d5 *inst/doc/simulation_study.html
10e2cb24200472c0cd3a80daa59dc96a *inst/doc/simulation_study_real.R
22556e648bc8dc348c879a611f5d3004 *inst/doc/simulation_study_real.Rmd
5a19bf39b33b436a35081485ff18a498 *inst/doc/simulation_study_real.html
63be2fa82f664c3684e2d5b9aa5479af *inst/doc/using_penetrance.R
8cbcc0c9baba068ceb4f63f878366b30 *inst/doc/using_penetrance.Rmd
334180c474ebf9d9efd04af53b2bbebe *inst/doc/using_penetrance.html
f19dbd0fe31bee3ad26f15c4a871ddc0 *man/absValue.Rd
62cbcd8b68a8845aa9140a3ca17088b0 *man/apply_burn_in.Rd
07f3c9ab3db12046accbf0b1715c89de *man/apply_thinning.Rd
63fd1803662235f4b2e0cbb0d921a6bb *man/baseline_data_default.Rd
3074ef417be3d0089d825f7de59233e3 *man/calculateBaseline.Rd
0613c9b333843381c59ec547bf02636f *man/calculateEmpiricalDensity.Rd
f7a090cdc8c2a9fa4822c43f1f3190a6 *man/calculateNCPen.Rd
dd81d8d59f85162ff3b1e5492f8bad4f *man/calculate_weibull_parameters.Rd
575b9df3d769a1541e36d40911c7384b *man/combine_chains.Rd
a836cf23ff2ad2042d6a1f9ea18f3e14 *man/combine_chains_noSex.Rd
82c72b19fefbd9dfbb91398ecd593bd9 *man/distribution_data_default.Rd
14d2ce2c8ef8385ba890e8cd15e174fc *man/drawBaseline.Rd
09368c344cd3d82da83c96ec49d2cf25 *man/drawEmpirical.Rd
7d27da3ec514fa8ff57a37eafeb94b03 *man/generate_density_plots.Rd
b678816a6ab3e2a219dc37204100ba2d *man/generate_summary.Rd
1bd3819ec7745acff70c2f9c4213392a *man/generate_summary_noSex.Rd
47b130047cb78d8aaa68410be034d151 *man/imputeAges.Rd
dc27468fdc64a82fb4d86bef7780b37b *man/imputeAgesInit.Rd
8b819876e3518a5fe002ceeb374ec396 *man/imputeUnaffectedAges.Rd
aee02a02b156b2e13974b7a6e71e45c5 *man/lik.fn.Rd
134634215e90e1aff5df48e453563cc7 *man/lik_noSex.Rd
7e4964ddb8aac7b7cb99191fe8c95013 *man/makePriors.Rd
6f6c8e2987c2bcdbe1b88784c12ef6f7 *man/mhChain.Rd
fdbbcde95600f112a00316876ce102d8 *man/mhLogLikelihood_clipp.Rd
80e3f0d092f3329e07467e8c22a0bf03 *man/mhLogLikelihood_clipp_noSex.Rd
79a7fdd235061447678339108dd56d9f *man/out_sim.Rd
6863af175c8719a60ec8b09f4506c386 *man/penetrance.Rd
18e3e5c69f032a4f6713bc373bd5f619 *man/plot_acf.Rd
c443daf58806a2d58839f3d6c630e06a *man/plot_loglikelihood.Rd
aeb9d0671ce7474b637738f816f06708 *man/plot_pdf.Rd
7c30c7f685e1394955a30081962e1ef1 *man/plot_penetrance.Rd
e8ed4b9feac2903f9463529e816c7f52 *man/plot_trace.Rd
d3a53ec2f637fd58048ec7870a8734d0 *man/printRejectionRates.Rd
d76cc1bccc7d06e5b47c62e0d2baa3e4 *man/prior_params_default.Rd
20929b0b0cdb3983d0374c11e071e769 *man/risk_proportion_default.Rd
135b1a00896f4aebc61c3781b17180e7 *man/simulated_families.Rd
79e26aed8fbc6e11f215c98edc806fc5 *man/test_fam2.Rd
9e339bd0fe99c7c66ea0530d73063ee8 *man/transformDF.Rd
62d6bb2ee07cf5ae4dfe0b0db82062b3 *man/validate_weibull_parameters.Rd
56e18d1e52040b0c29738e19a038f544 *vignettes/simulation_study.Rmd
22556e648bc8dc348c879a611f5d3004 *vignettes/simulation_study_real.Rmd
8cbcc0c9baba068ceb4f63f878366b30 *vignettes/using_penetrance.Rmd
