10885e8ef30975838189c344975920dc *DESCRIPTION
4be159101aa37c74ff725bd1f8e23579 *NAMESPACE
6db2b5657f47b9b40d680d3f9b1c9cfc *R/ML.RatePhylo.R
a079b7efd65c73ba24aa589b6add4433 *R/RData.R
d23c5815ebd84de6b02d55b97ac3d2ef *R/RDataTree.R
6605b96fcd2429b3f5d029cb2f2a1a21 *R/RData_finch_allopatric.R
71a6e4ab3d45b18e87d14c5fc5eb0ca0 *R/RData_finch_data.R
56ea9cce3c0f6f98646c28fdb011d4dc *R/RData_finch_tree.R
c53f3857e3c66bb44c960d99a8cb2f72 *R/RData_mammals.R
9db8980f96ca7f64ba872d2be2724b88 *R/RatePhylo.allCI.R
7d7e3d8250f51a1e439a25bb3992a81e *R/addFossilToPhy.R
dcaac193723889d2af00e6bfb6e7864c *R/as.rateData.R
cfa5744addd4e0cad965d0e8e3f4fbbd *R/as.rateMatrix.R
9841a90662ae40491744daa17ad05e52 *R/blomberg.k.R
4ad41b1abd5de757d4de0347aabad270 *R/calcCutOff.R
af0d1934da6bd3bffb0c2a274e0cb24e *R/chr.disp.lrt.R
22a2dc6f1fa7896ba2a930110a466e36 *R/chr.disp.param.R
1e2f05faec2b16a425e4deca6aa6c43a *R/chr.disp.sim.R
1faf1a1791eee5d9e5c6e2ea8f81f589 *R/chr.displacement_fun.R
bc19da3bc89546d2119a8e119dddd9b9 *R/contemporaryPhy.R
18aa214252f98f6f64e177b8b78d3831 *R/dropTipPartial.R
32f3831a1b61ca71d974afa767b039a4 *R/fairProportions.R
777555ea509daa3b3db96108bf4b9a61 *R/likRatePhylo.R
89e11ff329693ffd47ff1dc784ca7677 *R/likTraitPhylo.R
63ea7fe1a4ac35a9014899e27cd4e483 *R/mcmc.plot.R
1f68c01e07b3ce4fddc205ee7235cf7c *R/motmot-package.R
cfc50836064efdd9a5483f909086cfaf *R/node.descendents.R
63c478e0af18ddca446c580cf8ccbd37 *R/nodeTimes.R
563243daad327d377c65adc8f333e8b0 *R/optim.likRatePhylo.R
3cb966067ce797b9eb97d6ee4afdc239 *R/phyloCovar.R
5c0b2e9b74ceaa6c283edbec8b1022e5 *R/phyloMean.R
4ad61880fc0803f9ceda1a83a9d0a629 *R/phyloVar.R
ab6a8b31a549bf00909d5a515f75d663 *R/pic.pgls.R
4d5054be45dc2475594f5d0f648721fd *R/plot.timeSlice.ML.R
9e7588628559003324dc46bd9e506c93 *R/plot.traitMedusa.model.R
0568096791c64993c89cac45ed8d30a8 *R/sampleShid.R
79bbe4dc43239ba43f8a6c13270fb791 *R/sortTraitData.R
458de4b134b197b1a7d62905f4ce9ea9 *R/summary.traitMedusa.R
b3fc43d6a7952018a8b8e442658eb7f5 *R/supplementary_fun.R
1205236674d2c6f7c7c8a42cd61be42a *R/traitData.plot.R
1e707040c1922797e0596389d5c31458 *R/transformPhylo.MCMC.R
9bdf7f33252212fb9aeb57e5f72bf438 *R/transformPhylo.ML.R
246d72919a68b818906a535f91b6a82b *R/transformPhylo.R
08a522077f9bb49a8fb320ee9fe4ae9f *R/transformPhylo.ll.R
08ffbbad06f301b7d54e77c8d6974a87 *R/transformPhylo.sim.R
16e727e91d2d9d99568bb68213ae8b03 *R/transformRateMatrix.R
802f81940b98c75fdfec26656003b29c *build/vignette.rds
df5ddf3887de052637805be045100145 *data/anolis.data.rda
6ff9c4c78e8ea31405293d3da3ba7dbd *data/anolis.tree.rda
1019a39c92c9c2c8b6306604c94b80c8 *data/finches.rda
68f57dc738545499b9eec204c2119468 *data/mammals.rda
49e6126785b755b646c95e26b245c2cb *inst/doc/motmot.R
1674c5863a7862cb6afc9985773d6412 *inst/doc/motmot.Rmd
612adf9eaecde00ae704b716b92ce05c *inst/doc/motmot.html
41079b5389c535cdc54c3ae658117090 *man/ML.RatePhylo.Rd
f7df50fd1da594bcb2d23b6be7d22009 *man/RatePhylo.allCI.Rd
df36e102a818e70dea8052eaee5e67a9 *man/addFossilToPhy.Rd
7d19dd4a6fc5113308df73cc5a43d541 *man/allopatric.data.Rd
f009b8faa0eda7e4b4dcdd8c0962f04d *man/anolis.data.Rd
678a7f9bb4f1e30ac29b64826077a2b1 *man/anolis.tree.Rd
340682ae96af48f5bb7b1d808f91d6d2 *man/as.rateData.Rd
e4d730f410644a3d48228483abd50e03 *man/as.rateMatrix.Rd
90fc25bbfdc34d734c17e05ac949f038 *man/blomberg.k.Rd
f47c9ca73e0abe5ecee1bf45e25f00b9 *man/calcCutOff.Rd
1a55e788566cb73cec3af223e1ca5354 *man/chr.disp.lrt.Rd
658b883c4d475c8ef87b2bec5c714bd7 *man/chr.disp.param.Rd
091f293ac24161655c1cca1daeb85f06 *man/chr.disp.sim.Rd
763a459f57db1a0abbf431b80963e937 *man/contemporaryPhy.Rd
15d305e7fb85d6812f21b19322018203 *man/dropTipPartial.Rd
f680dc4ea65d0cb89e85ef42d7d6a948 *man/fairProportions.Rd
2c9f3003451f302e08e3812a28e7158f *man/finch.data.Rd
6f86c97f6b3f7c1a826ae4821eae2417 *man/finch.tree.Rd
6ed3987626e8563417e16142f0b59f87 *man/likRatePhylo.Rd
67a204d80cdd01c4851e985c88c81af9 *man/likTraitPhylo.Rd
8ad62969392e053f41484bc46644adb7 *man/mammals.Rd
8f554c32fa789c77947bdba07d15b330 *man/mcmc.plot.Rd
44edd70e18b77f156a075f8bc15d0530 *man/motmot-package.Rd
b751ae0fc27486440012989e52922a98 *man/node.descendents.Rd
9d9b68221e430ef853a2ca415be2c30d *man/nodeTimes.Rd
89c7a396eb14fb09824e92be1931981d *man/optim.likRatePhylo.Rd
ff08fa237b37965099886ac752eafb4a *man/phyloCovar.Rd
d46b06ed90f6bd015def3046450e35e8 *man/phyloMean.Rd
388e88c476e4294cfbee3fb0f989171b *man/phyloVar.Rd
6dc4cc1562225faa754860491c4ff45f *man/pic.pgls.Rd
021ee0cfffc4b41c841e127b4a9755f5 *man/plot.timeSlice.ML.Rd
51bfcf30d78b3de3929e7f8598d577b7 *man/plot.traitMedusa.model.Rd
7b1bf47a9b42e244c7a4db303afe859e *man/sampleShid.Rd
bb9e976edf9fb358cb93fee2a167bb0b *man/sortTraitData.Rd
819613cb5ac2bebf0c532c50a4aa9807 *man/summary.traitMedusa.Rd
efe7b426a38e96b0b55911c585dc707f *man/traitData.plot.Rd
b0e43ae6226bbd34a0bfb9085a570007 *man/transformPhylo.MCMC.Rd
8fb4b0d42027a7740eac6684778337f5 *man/transformPhylo.ML.Rd
56770a780bf8a0e54ebf2cc7d3887bcb *man/transformPhylo.Rd
27b7d3d8e9c8655c5c06bd8d0ee35a39 *man/transformPhylo.ll.Rd
79c2befb7e3e4e53548c995ad1df90d3 *man/transformPhylo.sim.Rd
83493d5b2265709cbe9a9d03d35bbc60 *man/transformRateMatrix.Rd
0308d2c5db869f404ac51089c8fa9d37 *src/Rfunc.cpp
ee49ae6b2d4c5088edaf5a3c99531ce4 *src/packagename_init.c
f65503544a3e235deb5e31f22fc7743c *src/sim.cpp
92f878f0e674fc0cc83235f18a8668d5 *src/sim.h
53e8f41570af8c12d6e5cdb0e8696954 *src/tree.cpp
e27de0087b6e469998b53e2dfb57bac9 *src/tree.h
1674c5863a7862cb6afc9985773d6412 *vignettes/motmot.Rmd
