00d154888f8cc9d08254ff9a03ec9889 *DESCRIPTION
79f84ca6b22e6579d439a673aa257a9d *NAMESPACE
e102af56190720913b3c9cd0a4a9f549 *NEWS.md
6057c99c4843eb49e7b3305c642e6b75 *R/LOMAR-package.R
e17312549cf21f16bab93b6541e14778 *R/RcppExports.R
aee26daa905e5901cff3bb609db31e48 *R/TDA.R
6cf993152b2acf831379d06701d08df6 *R/alpha_shape.R
bca702859e2be62d634909750a897ffb *R/data_input.R
9732ab6beb07a239f7a694fd4f10a0b3 *R/registration.R
475b89ef590bf51b831be242bdb2d388 *R/utils.R
e682402f03493a7b0857295b002df72c *README.md
56dc2d3431942ec49053ec8013c9e7b2 *inst/test_data/img/alien1_3d.tif
e60413287fcd7b7d08f42962d78c0688 *inst/test_data/img/alien2_3d.tif
1aab4f447d36d17d035f1f789a7684a2 *inst/test_data/img/alien3_3d.tif
14bf1b0baba30476d47a1247dd7c1291 *inst/test_data/img/alien4_3d.tif
86e42111889267a894cad0b704b7e1da *inst/test_data/parasaurolophusA.txt
31939886b40e7648bf8cc358ea578957 *inst/test_data/parasaurolophusB.txt
ab121b11082dbaf02f9232db01d0258d *inst/test_data/parasaurolophusC.txt
6c8d867d62a2b53f3e1c1b56b1edeba9 *inst/test_data/simulated_NUP107_data.csv
1ba3774fdf86d67bb337b81454fb4e0b *man/GMM_Wd.Rd
334aa26c8398d5b10bb5dde78049ca42 *man/Gaussian_Wd.Rd
d79cf00486bfaf6f1d874f61db684355 *man/apply_transformation.Rd
7e2c8ae05d17181020d2fdce67b85925 *man/ary2ps.Rd
e48f8f80a03f0cec188e4ff3a328ae23 *man/binning.Rd
2cc0281af5b213705709b7042e22fc77 *man/circle_hough_transform.Rd
475bc7ae804debf2a3576baa6e0683ea *man/coloc_index.Rd
557c6bd033d3fe3069ee9413663a085d *man/costWd.Rd
b9a2aa79fbebcb0767a2e592d10b767f *man/cpd.Rd
e14a7e27a201077e51af58828828aea1 *man/crop_point_set.Rd
911ea6f69ccd850c782affad9d50052f *man/denoise.Rd
bf2814166ecdc1161f62bc401e66734b *man/dist_to_boundary.Rd
925d255a5d4a9aad089518be9fb6cf6d *man/dist_to_line.Rd
ae6850454f811ce019fec4e37c91e151 *man/downsample.Rd
b3467eb1831ec15ca8335cffb64c59d6 *man/find_elbow.Rd
274f88084b01399bb47f8c7fa2a28647 *man/get_kernel_matrix.Rd
1566f393dc83c2058f002e4ae42f6605 *man/get_persistence_diagrams.Rd
f2f0bb1ad6f1604c196ff28c66e538b5 *man/get_shape.Rd
94fc68870b7d09c710402fbc8037a6ab *man/get_surface_area.Rd
e07db99c696c20f9cc3d1b7c40da694e *man/gradientWd.Rd
cfc64c40fdaba2626d34e78d01dc5c79 *man/group_events.Rd
ed72bd9784d6f86419a9cb110ec3eaff *man/icp.Rd
132ab56932e859524c987d3a62c7ec48 *man/idx2rowcol.Rd
5db4df69e6434c07ffbd0cc75a51dd94 *man/img2ps.Rd
60808937e6d6db672051f0adee5adcd0 *man/jrmpc.Rd
c63ee3630e33913673aa5e53ef8d57ad *man/local_densities.Rd
cc752300b531b514e93f9cb4ca6e3b22 *man/locprec2cov.Rd
4dd92b9052afaf4ae408df20e6db8bda *man/locs2ps.Rd
af0b72dcbce7f7e5b03e910778a33a99 *man/locs_from_csv.Rd
2c084dba0685ff88c9eccdb7ac2793c6 *man/multiple_registration.Rd
6624d9e2c1d3b30d1b1e76b48acd2e4b *man/point_sets_from_locs.Rd
59dee606477009fc2f7df5350b4a15d8 *man/point_sets_from_tiffs.Rd
b252eeeedbd50b01bc16d10eb3fac133 *man/points2img.Rd
a9ab63d07dfb40847992fcaa97b6380d *man/points_from_roi.Rd
89b9aa210628ce74044879f7324ff434 *man/ps2ary.Rd
7f8531917f6b834220f4d3869037c481 *man/pssk.Rd
53239747ec4f371f7f802d4016fabb7d *man/q2dr.Rd
737d535e155eeff2e607b3ccbc6b2339 *man/q2r.Rd
578a3141e21b8ab57e893a9e74472243 *man/restore_coordinates.Rd
5c6c3f327dc8bbd75584509f729a46c9 *man/rotx.Rd
d27eb5eb77b96b5898358a0b8a2449ab *man/roty.Rd
19af6c3771c701c8ca2760557cf2e0dc *man/rotz.Rd
7ac3c2876f0f68e30d36218271be8a3d *man/scale_alpha_shape.Rd
c78b9ef5e66b3d755d15b949a1945cda *man/shape_features_3d.Rd
bde15dd6029c5b31aab023924c435513 *man/sliced_Wd.Rd
464bdd907efedfb5020c3e633a0ebd42 *man/standardize_coordinates.Rd
082337353f7b118db615c536ff1b8220 *man/tr.Rd
36407d2026ae2bd0363a33429c9b5541 *man/wgmmreg.Rd
54b58c3d555580ac565b1c7a725121ca *src/Makevars
4faa3af606983131f543f34b43a58351 *src/RcppExports.cpp
462eb43368dfffba570f3065c421fb1b *src/boost/container/detail/copy_move_algo.hpp
0025ee2f4862d96158a54cd4540ca842 *src/boost/container/detail/flat_tree.hpp
0fe897655a246b031c177852f653ce8d *src/boost/container/flat_map.hpp
991a7740806a3fff7be12a0b2e5695db *src/boost/container/vector.hpp
28fe85825aecf267411cbff2c00b6da0 *src/boost/serialization/binary_object.hpp
5e25aaa826bdf2f0fba42be72bb54b79 *src/diag.cpp
188caa00dbad91a3273804c96a567e6e *src/dtm.h
b05ae0ecc689307fb8fddc2d47efef31 *src/geometry/Arbitdistance.h
b266594c8e380fc9f25d9a18b71d2b94 *src/geometry/NOTES
edfbe6d6688975f9eab8f29a4d6c8597 *src/geometry/distances.h
ba2ab9bfa5485a6fc97b19cab142ffd7 *src/geometry/distances.hpp
340bdce4ca8fd832b49ff6a91cdd5606 *src/geometry/euclidean.h
be37d68c25d87df3760d3d81f3e5eb82 *src/geometry/euclidean.hpp
734fbec28678c4c1c6f96e6971e809eb *src/geometry/kinetic-sort.h
51410ea580bd44960929f15cd1b6dcd5 *src/geometry/l2distance.h
c35bfb28f0a3ba3dfa2c914281bd0e00 *src/geometry/linalg.h
89205967ddf2fc04b28a024e5105fc54 *src/geometry/linalg.hpp
84338c737e816ad72e22c70e03aeecdc *src/geometry/linear-kernel.h
fe5ee7a5c5d0396bc484a937a89e43d8 *src/geometry/number-traits.h
c0784e8fe1ee869e931c61f36df35746 *src/geometry/polynomial.h
6ba845a9fc5ff9d809419d139552930b *src/geometry/polynomial.hpp
c7a9547c789cdfb3d54591db46e087e7 *src/geometry/rational-function.h
5c84e957c8f7f29f89c51b146d1221c4 *src/geometry/simulator.h
d4d08381ed2a6716a4545996d1c2db8b *src/geometry/simulator.hpp
1e77b672e511be4c106b172bbab24b09 *src/geometry/weighted-cechdistance.h
9f1e9915ccc42df866d0674b2fb8fd4c *src/geometry/weighted-l2distance.h
789cab4d8fee947a968250979999c057 *src/grid.h
0a190c86975648fae04088189d6458d2 *src/kde.h
badab60b927c4d728c12875a5bf8c892 *src/rips.h
c7a98c169b0071d33cea90d144b2f20f *src/tdautils/dionysusUtils.h
c8606ac8cabceee7bf6c34b8f127feb6 *src/tdautils/filtrationDiag.h
2c9d221ba42ec43dadb40fbf6e36e4e7 *src/tdautils/filtrationUtils.h
8fd5fdfc8292c826f3c11586558a9e13 *src/tdautils/gridUtils.h
16d21fe2a266b416dd4118ea3423f8a0 *src/tdautils/kernelUtils.h
4259dedb6a394fe678750a2fd29d6712 *src/tdautils/ripsArbit.h
235dc02b72178477ab9060a65200958d *src/tdautils/ripsL2.h
786d669fbf590548226aeba69e7b5cca *src/tdautils/typecastUtils.h
69c9f1464e85be0a4e26fa536ac305d7 *src/topology/chain.h
23aa606dc4db09c239890000e142603d *src/topology/chain.hpp
eb566a3992c2e9be51c34f751e6594ea *src/topology/cohomology-persistence.h
ad4812e8b2db04c04e7fb6e8463a7a54 *src/topology/complex-traits.h
4e4b1204f2efbb662798d5a77471c542 *src/topology/conesimplex.h
fe007886495b28104caf6ec64832922b *src/topology/conesimplex.hpp
cb9003aa6bc86377b0cba6c475400b48 *src/topology/cycles.h
4b451e006d9af9ce9ad8360350b703e3 *src/topology/dynamic-persistence.h
430e03638fec14d18a5f0c3802ce7c29 *src/topology/dynamic-persistence.hpp
98c1716687986f802dbe4bb954bde739 *src/topology/field-arithmetic.h
7fd782b0db33a5c3411da2be0a9d5b21 *src/topology/filtration.h
d8b6c2e50d5b2f74a92e5bd6493e07b3 *src/topology/filtration.hpp
8ee3893f75a66d30c988d5506f4360ef *src/topology/image-zigzag-persistence.h
22c59c968f6dff2f365ebab90cae4215 *src/topology/image-zigzag-persistence.hpp
8c669ef2a76d78f128573b74fbcaea68 *src/topology/lowerstarfiltration.h
bfe327e1e025fca1321fa63042ce4bb2 *src/topology/lsvineyard.h
0fdf0083a312149c619f4d569e0b8c8e *src/topology/lsvineyard.hpp
3d038de13144ac780d030f7fb9e77048 *src/topology/order.h
63b31309e215bedcbc4c888827f55e35 *src/topology/persistence-diagram.h
8e8111eed341a86345b9afc9e7868af9 *src/topology/persistence-diagram.hpp
192ef0a6440270605188a0c1f8221e61 *src/topology/rips.h
9819056b952e755d81543b99643fdc82 *src/topology/rips.hpp
a9b3b32ab2e44a1c3080d93b5a9d288a *src/topology/simplex.h
fbe7ca93cbc91b47fc1f801dcb209d0f *src/topology/simplex.hpp
dbde7969e05b166e74c62a63aa452aad *src/topology/static-persistence.h
997272ee803b121280ec0b2171da75ff *src/topology/static-persistence.hpp
7342cf7ba7ea4208cbea4b693a175d6e *src/topology/vineyard.h
3ed2ab744e45c5ed1867ece0b2f47e9a *src/topology/weighted-rips.h
4275eb033338d57149ade50a381a4d26 *src/topology/zigzag-persistence.h
771da8397bf22fe63104dd4d451f5b6e *src/utilities/binaryheap.h
7f785ad6febab85e26f762abf8f114ba *src/utilities/circular_list.h
2687a258ca138205880145f1e01689aa *src/utilities/consistencylist.h
56c9b72d44283e62fbce4d6ccb62c95c *src/utilities/consistencylist.hpp
9974997e973aef36b55ea66fa540a3ef *src/utilities/containers.h
4ec24953f8474839d82f6404bafc7c84 *src/utilities/counter.h
59e2cf2e6a3c80da541b333d91d312c7 *src/utilities/eventqueue.h
b98141ba7c62b6029da12949f2255c26 *src/utilities/indirect.h
77b5d546445c7fd440714010a1d00b39 *src/utilities/log.h
35194dbceee44668effa4e3970273259 *src/utilities/memory.h
bb37aa37b49cbc2906515db2c1888da2 *src/utilities/munkres/matrix.h
d1c936321399455ffefe73285d5c8260 *src/utilities/munkres/matrix.hpp
3a7c01650de0ae63a7a39b2209d2a231 *src/utilities/munkres/munkres.cpp
d503f91030e8f9c5e374e39c8cd6aa88 *src/utilities/munkres/munkres.h
b7091ed060358c6b6977f87b4648a223 *src/utilities/orderlist.h
8875a3508db41af8aa305f3ec8126f5e *src/utilities/property-maps.h
989c8ece2a641c320ec94b1a24919ca8 *src/utilities/timer.h
d1d5921876ed19832166116168c91d76 *src/utilities/types.h
edcaa62fd678f6fd3cda4364f6e9fbb5 *tests/testthat.R
4d44e40f847558eb18e3fbc17cf86395 *tests/testthat/test-TDA.R
e6558745cfa11e60a9f57bb29e98d624 *tests/testthat/test-alphashape.R
210f5b339ab816f6e2d475775fe4ba97 *tests/testthat/test-data_input.R
3cd012d07d14bd2e0bf74c58d64ea34d *tests/testthat/test-registration.R
1998775a5b3d4072287c047c2af324fc *tests/testthat/test-utils.R
