249a3f9cb4503f66474a8d467ac5fdc3 *DESCRIPTION
e62637ea8a114355b985fd86c9ffbd6e *LICENSE
96e8598d29f866ff36bf856bfb74a54e *NAMESPACE
9ae19c461315674f961fb04183654228 *NEWS.md
c0ac08a4259e08236fbe8bfcd77a51f1 *R/AnnotateIDVCF.R
5e2d348c50681df8fea9fc9839ed65a7 *R/COMPOSITE.R
0c0f3a91438b90d8b2438388287429d4 *R/ICAMS.R
2268e30084bec09fa86288e395e817be *R/ID_functions.R
30a570679c10d714f75d530e61da43e3 *R/VCF_to_catalog_functions.R
eb61c8cfc242acb6060175e2b7eb6b5d *R/chromosome_name_functions.R
7114c63e1a8107b6c10324a74e687d6f *R/data.R
00e0cbb61efb61d956c5972a35762902 *R/infer_catalog_format.R
b7b7bafa3d429e976290679317e51539 *R/other_catalog_formats.R
cb3a83ec822c423c4fd8132706340338 *R/plot.R
778cd62f8414c4564a7ed056fc0c9528 *R/read_write_catalog.R
659f0a90e0144ed26977da19c3fc2f0e *R/sequence_context_functions.R
0ec5aea24075d5879963c788313d7600 *R/shiny_related_functions.R
921a418870841056bd94995eb0372dbf *R/simple_file_functions.R
8dd5935a30146c1920ac9e997cb8c7b0 *R/strandbias_functions.R
6ad25895a827a1fd3e41a98f10aa1a00 *R/sysdata.rda
94094fbde8164a38870c21b2e9341f0d *R/test_functions.R
13265bfafd0d54c4513a7ceba38f1053 *R/utility_functions.R
73206ec882b48a802bbee55ac9c29680 *README.md
959827fe1c445357595478f7ebe8c8b7 *data/all.abundance.rda
9bed4615093c1bd9a7407357e68e97da *data/catalog.row.order.rda
36de4e671355adbcec1230540e9f6b7f *data/gene.expression.data.HepG2.rda
ab3781c527aec697195cf8064d820e10 *data/gene.expression.data.MCF10A.rda
9bfb1577919ff50403966d814485698a *data/trans.ranges.GRCh37.rda
c3fc8a1c5ebe3df73803afd5f7b4fa94 *data/trans.ranges.GRCh38.rda
fccec8868a280955a86b9fb00754ef85 *data/trans.ranges.GRCm38.rda
fa0f3012dafa8000785fa38a4ba9564c *inst/CITATION
d4c7ba79cc1802224e6371fbfb160308 *inst/WORDLIST
7032f9f42166360c7d306abe68586ba7 *inst/extdata/Mutect-vcf/Mutect.GRCh37.s1.vcf
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cefe323c7844e42fd781c042a5e74646 *inst/extdata/Strelka-SBS-vcf/Strelka.SBS.GRCh37.s1.vcf
320722650f1f2df921c968733d5e074e *inst/extdata/Strelka-SBS-vcf/Strelka.SBS.GRCh37.s2.vcf
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81693d82934a743332d1aa3ab0b7b292 *inst/extdata/strelka.regress.cat.sbs.96.csv
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