7240d81736d5bb8266b631590c70ff6f *DESCRIPTION
c0324695218b9ebcb0a6676d692757d4 *NAMESPACE
4ae04fececbe1460e620a3683e845bcd *R/BB_Likelihood_counts.R
8a640e0a61e9aa2b4270dc89fcd17343 *R/BB_Prior_prob_phi.R
5013fbefc8fc3525c28032227afec103 *R/BB_Update_mu.R
32f1cbbdd987872d081eb86bf7084f52 *R/BB_Update_phi.R
234830961fff0b6e78aa085524db83f7 *R/BB_Update_thetas.R
30e0951ccae8f070cfdba2f622acb742 *R/Covariance.R
770cf954396fc120b6d638ba6a258761 *R/Initialize.params.R
93cab56adad02fa1602622195ddcde62 *R/Likelihood_counts.R
f753f480bb7caa96f175013bc8dd365c *R/Likelihood_thetas.R
61a69cc096c59cfc1d7978e5965e478f *R/MCMC.R
f4d64c2b54ae8c538628bd240458d1e1 *R/MCMC_BB.R
6803863f4a57bab4339c29f785b44db4 *R/Prior_prob_alpha0.R
ef6fb011b230eda6b0f60f18ba01e622 *R/Prior_prob_alpha2.R
5886c6107eb152ff8b877f1e9c3f1513 *R/Prior_prob_alphaD.R
2c9d4265a024fc9977e3ace97757170c *R/Prior_prob_alphaE.R
2e0f459919e1fce225b429dc0bac2b24 *R/Prior_prob_beta.R
fbb340e8df21ff53acc651c04e4cf460 *R/Prior_prob_mu.R
57977b95b82c92fe0b26b50eab75a160 *R/Shift.R
ed444d3cfb0e16b30fdc03975930dc61 *R/Update_a0.R
c85b50f2c58122fdad78180c5cfbf3bb *R/Update_a2.R
f3a5bd7955f8e5fc3157e9d79aa6f7d0 *R/Update_aD.R
fbefa029072e83100639701d7f8dd881 *R/Update_aE.R
6b040117c6f990c3f04bcae25190628f *R/Update_beta.R
79611c875819d6bd4229cc123845d842 *R/Update_mu.R
f5d5abb2b1c9a389500bb049ef62634d *R/Update_thetas.R
730a680e0d253662c49792467259b59f *R/a0_gibbs_rate.R
e2ef2ca7c82c8869b0347d6811775744 *R/calculate.all.pairwise.Fst.R
8cab36137376d12ba9dc873ee983c00b *R/calculate.pairwise.Fst.R
364963668b11d4d7e421ae7e5816c734 *R/identify_invariant_loci.R
5b2d6cf099b58c186154e4d74fbfd0a5 *R/link.up.posteriors.R
6a49058abc5bd3dc35026d121afede53 *R/load_MCMC_output.R
117c48c6d5b53f55182fb9bc04045520 *R/load_posterior_predictive_samples.R
ec4cf2574a8730c9690b58b9f279e967 *R/make.continuing.params.R
71d840a8ff9f5b0a09efc9a1f6af52b4 *R/plot_acceptance_rate.R
9e5dc14b2e2de958340bac733966775f *R/plot_all_acceptance_rates.R
666d7b0eba881641e80bcc8cec6c27d5 *R/plot_all_joint_marginals.R
629e8cc7a605fb568c405c7f100b738d *R/plot_all_marginals.R
6ce72450e677523ee6db03fc1f3d9e2c *R/plot_all_phi_marginals.R
8bb38d966ce9e4295ebf409d7b9227b0 *R/plot_all_phi_trace.R
2ad53d6f423a5db6b896db05bfe1cf7f *R/plot_all_trace.R
e46dc3d21488c894107f5d75bb274745 *R/plot_joint_marginal.R
bd912430d4134180a8cd187fafc84dd1 *R/plot_marginal.R
521c4741c049a97f329c10fa6aa224bd *R/plot_phi_marginal.R
dfc3346b1624b546f7d57398d1d71bb2 *R/plot_phi_trace.R
28cf33374171f803eace39062bcbe872 *R/plot_posterior_predictive_samples.R
d6a161120f9f8e89b2fd79861ffc3fa9 *R/plot_trace.R
b08f0dd7621c3ac492505c3dcd30dff3 *R/posterior.predictive.sample.R
69de031e6a33882a0946ecb3b5ec392c *R/simulate_allele_count_data.R
94147ce90b21ad726122cc19a9a7b2a8 *R/transform_frequencies.R
746b15618172f5be6dbdd35c3ad70826 *data/HGDP.bedassle.data.rda
e6afdd23b881fb9b73c58a624c3601a5 *data/mcmc.operators.rda
ebf1a1d0c7d8b987466c4da21e5204b4 *man/BEDASSLE-internal.Rd
d4c72ade3bc5eb0dcc2d196dfdfd7cf8 *man/BEDASSLE-package.Rd
7d0a423408e62395fd2d440f2539c024 *man/Covariance.Rd
a8c093111298350085762fd616c3ccfc *man/HGDP.bedassle.data.Rd
83357251aa89677f80acb7db7f9b103e *man/MCMC.Rd
caf0970bdfa408f407bb563a28af8396 *man/MCMC_BB.Rd
3bd38fce490a0775833c9e5090aecf01 *man/calculate.all.pairwise.Fst.Rd
62184089994369e8970c2f35afcadfa8 *man/calculate.pairwise.Fst.Rd
b40f5018109b7813e9a74440bca5e3d1 *man/link.up.posteriors.Rd
30cfaebb8cb62599a6aa22d478b5947f *man/make.continuing.params.Rd
2a90639a42f22c1eabac32afce8ebeee *man/mcmc.operators.Rd
2db39480522e3747793d8625d38e26d7 *man/plot_acceptance_rate.Rd
26326e957c2afbc4413983b88a49f165 *man/plot_all_acceptance_rates.Rd
1330e4027e90f5099fa63289bb4cd6da *man/plot_all_joint_marginals.Rd
cc6fd4635d353f82ab4b0966bb57c455 *man/plot_all_marginals.Rd
fda498254318e0988659de4a8df9779b *man/plot_all_phi_marginals.Rd
8f5ad826a1040194accf2e059080047c *man/plot_all_phi_trace.Rd
bad34de28d90561635c9cfee59400770 *man/plot_all_trace.Rd
2743889e253853cf42e01e91a9818012 *man/plot_joint_marginal.Rd
cede4241cfbfb8b7e23ba27320fc33d2 *man/plot_marginal.Rd
7f678b2e53d05f7248177c2caaa81134 *man/plot_phi_marginal.Rd
1ef86ca68703a71c8a3623ecd3281dfc *man/plot_phi_trace.Rd
959148aa954dda07d68976484bd9c239 *man/plot_posterior_predictive_samples.Rd
dd01c572525fe06073b4aafb40bde94d *man/plot_trace.Rd
977e36daa27cac099552cf2afdf735d8 *man/posterior.predictive.sample.Rd
