72c2dcd7bfdb2c567f866a7f5103cdba *DESCRIPTION
0547f0d2aff2720e03eed6130569e0f2 *NAMESPACE
02ef35f16d3b44d5e6afda0c3b4bb796 *R/AllClass.R
02efcb0f142adca1393567e6c18b2e93 *R/INFO2df.R
6d5290c510a782d640d73ea421053536 *R/RcppExports.R
f5d9f8bc4ada55b3afb22550400dfdef *R/addID.R
6a0b1e1574d1c8e4eb98d48ea12d8944 *R/chromR-method.R
02ee0a24fc1c223ff984531b361fda45 *R/chromR_example.R
099a7d14ecfb41c251eba9d912995f29 *R/chromR_functions.R
cba0b304a8e16bee0c9182d7616bced9 *R/chromR_to_vcfR.R
d93f53cf08fa6acc0028a523dedb9eef *R/chromo_plot.R
f689437c90192d995351d1cb5f04ad52 *R/create_chromR.R
6f45c217da7622d33970c001df58d001 *R/drplot.R
69444947880145d273c43779d3dabec3 *R/extract_gt.R
3ba17395b87d6750aefe589085b13bac *R/fasta_output.R
f0d9fa883539cfeedb17676a81ea5322 *R/freq_peak_plot.R
2b0881cf8ae05822166a07e8fbc50210 *R/genetic_diff.R
6d0c21f40cb515f54d3be634a5d65c88 *R/genotype_matrix_functions.R
80a8cf2a8dd81a433f4faf645e9f6ae5 *R/get_methods.R
f59e936f8e9951738f54dfcad0b09a9d *R/heatmap_bp.R
0306ac7bffefeffd390e9481c1db802b *R/io_vcfR.R
0824fab67da08dc6976f31dbdd887403 *R/is_het.R
c8c9c7f318a6838df588a557d82cca1c *R/maf.R
e7850040eab2dd52fe1c613c769c795a *R/onUnload.R
4a55a18dc04d41f8a6423a5b0b126069 *R/ordisample.R
48fd65fd647846b7d4e6de595b40ea31 *R/pairwise_genetic_diff.R
81d1b680aa8f1f9b89741022253b7045 *R/peak_to_ploid.R
9da234d56a9bd4b71de89ddd78c51e21 *R/pipe.R
d9730b8d908f51d701f30b667bd4c711 *R/proc_chromR.R
731a734cc9706e41a0c9e0c56a727f0f *R/queryMETA.R
4157fbb30db699ee5fcdfd8e372ddd52 *R/query_gt.R
3bc992f6e6f1faeaf35755b197c9ebac *R/ranking.R
10111fddc1e6aba49b5d30cc66ef6b0b *R/rePOS.R
ead870d89ff56f03885d237e3ef6fb35 *R/sandbox.R
1821e74f27c282e53b4489fbf787d289 *R/summary_tables.R
8e06c0c168d98e2807ca153ceb68c3f8 *R/vcfR-method.R
71d575f6310bf1a11d5b83be869c85d4 *R/vcfR.R
49033f5832c1a21df2f79ea4a5eaf7a4 *R/vcfR2DNAbin.R
36b924ceb13694efec2ed6fdb0fe86e4 *R/vcfR2migrate.R
f821e70c3a03e2afbac6e517223d5750 *R/vcfR_conversion.R
9ac5ff0c92c329b80a9fef26df321aa1 *R/vcfR_example.R
4982b3b0dd78f1d15687815ccbceeb91 *R/vcfR_test.R
8ab6d0b68291d1a1170482e6236df315 *R/vcfR_to_tidy_functions.R
ad92b4c5e3ceac02a6bc2fb7f37ac232 *R/windowing.R
7e6e1148e4be0b841c536c986a2cf572 *R/zzz.R
6614c003b666f228aa9fa762efd0bfaf *README.md
308eb127dd1a85962f569685b0337fb4 *build/vignette.rds
fcdd17a1c8b7adb4d72c32b41c780ed6 *cleanup
3e1dc69efcc95f2c81204810e78b3697 *data/chromR_example.RData
a59634d93a55f32fec23400329223c18 *data/vcfR_example.rdata
f7ca2c9958e18863824a4ed43473f546 *data/vcfR_test.RData
ce884dda6a2864ddf829f5311c74e59e *inst/CITATION
094758d1cf7ec25db93131e14046ff34 *inst/doc/converting_data.R
f117bba51d89249c5b51094112bc6b94 *inst/doc/converting_data.Rmd
6bdd29ac41aa4c5c17419cb99312b798 *inst/doc/converting_data.html
b42791a533fed9619f7c6d431c11b22e *inst/doc/intro_to_vcfR.R
692ea16470b9576382b31b660c09f494 *inst/doc/intro_to_vcfR.Rmd
c6b45dbd76f6d9ffedfeae02a8a7b7d0 *inst/doc/intro_to_vcfR.html
66c504244dbf3b28a2cdb6b8d2be20bc *inst/doc/vcf_data.R
f1e8131533d69de3f0d6a25229d2db59 *inst/doc/vcf_data.Rmd
9a61a661b20a069f387c7851dae565bd *inst/doc/vcf_data.html
f86063812657997c8c822a6a47e4bd14 *inst/doc/workflow.Rmd
a81920041b548bfd2663f33936bceda9 *inst/doc/workflow.html
fcc1164c01a01a95d8e6aa196da40a21 *man/AD_frequency.Rd
0f213fd7566b6f83bfd5dde477362623 *man/INFO2df.Rd
1dcce6bb3f261e55e6cb86b22fef536b *man/addID.Rd
4e18e2df68a400e3a6a8f1b2034e47cb *man/chromR-class.Rd
63ea7541d757c0205b18de48c28b9a62 *man/chromR-method.Rd
594611ef630a14181f5156a9a6e2ac89 *man/chromR_example.Rd
302c607f44cf2e79ada748fa88df661a *man/chromR_functions.Rd
8f5988dd023cbde3b47e2c9ce8024436 *man/chrom_to_vcfR.Rd
d61221d1de77745e62c648ae1b38f095 *man/chromo_plot.Rd
48383dfc52d88bd708a3ab77f7b2d3d0 *man/create_chromR.Rd
75712ce137c9d68476e90a4ef2192afd *man/drplot.Rd
c586ab4fe40d750787c66fd18b01d452 *man/extract_gt.Rd
f2192eda3dd124b8d2091dc7543a94ac *man/fasta_output.Rd
0257e9b4f6fb1bdedaa97a6eae8174ef *man/freq_peak.Rd
4b665d4446729f0d704458cf24af0872 *man/freq_peak_plot.Rd
efb7bcf486f775831f57ddb25b8b259a *man/genetic_diff.Rd
f292d03c254ca3ab02d6391fbab5fa2f *man/genotype_matrix.Rd
75818ed4646a97685845e0b11674cc7c *man/getFIX.Rd
2fde94c61cf8ad5568dac6b660eb2c26 *man/heatmap_bp.Rd
99b03bb34a745a656b4001c377f749b0 *man/io_vcfR.Rd
9eb5738bc4ab0f12fa541ed4f561a334 *man/is_het.Rd
16f693e87f06ac7e2be456512776f398 *man/maf.Rd
29126eac77775c95a66060e64ebf3974 *man/masplit.Rd
e63fd0b5ada4126bc058ce5cbd7765c5 *man/ordisample.Rd
f911b66c30835f7919b7e31ad9d9c301 *man/pairwise_genetic_diff.Rd
f1caee40601884aff865ab8d57388bcc *man/peak_to_ploid.Rd
e17f41e959fd90a1736ad0fc8ee7ff81 *man/pipe.Rd
9dc9235554a2dd7fe56298ab3fd3c782 *man/proc_chromR.Rd
592c7d1397a65ebf3d0b7ae1487bc1f0 *man/queryMETA.Rd
3caca9b6e0b29c4cd118b46e2277b110 *man/query_gt.Rd
a84c7b2aaeabfc8698f9d34c8f917b0e *man/ranking.Rd
a2db89ce8aea5875a2f353875136f45e *man/rePOS.Rd
28d11d44500af546e840722b0f6a754f *man/summary_tables.Rd
4f6b04996690b58b70f8b55356bfd651 *man/vcfR-class.Rd
506a93ee2e48b214429b57a093adebb8 *man/vcfR-method.Rd
6cd501a0136737b40cc26799c9f0b787 *man/vcfR.Rd
14d95f952e57b5c9b6a2ebebdfd12f13 *man/vcfR2DNAbin.Rd
aeb405f98d6380fcb93ef081f3f71eb1 *man/vcfR2migrate.Rd
c9ecb1e21971d807ee97d964167c1b1e *man/vcfR_conversion.Rd
252edd5f9d2f197b2eb2a5484a4e5970 *man/vcfR_example.Rd
981977e587c4fb0325ef1b8623a49c17 *man/vcfR_test.Rd
35a789def412aec2bd47f3a2aa297570 *man/vcfR_to_tidy_conversion.Rd
e0b257f17a494fb83c1bd62e528df4d2 *man/windowing.Rd
1f9c915c0048efbf362ba138410762f6 *src/Makevars
e4fff8efe7ec58b48c06d3019d0fdb71 *src/Makevars.win
a3da0e73d8b1bc3abcc723ca6f4ad42f *src/NM2winNM.cpp
a859877e03aea17f459f841516e7a62f *src/RcppExports.cpp
be2a2ceaed391297daed53312a181216 *src/ad_frequency.cpp
32a171afbe3ed0a3dc94203faf2a187d *src/deprecated_funcs.cpp
06e72977a03288971216c37487347c78 *src/extract_gt.cpp
7a0ba335770c51dfc8ec8fc6fdf2412e *src/freq_peak.cpp
a9a992b3ba4d2b3903059b0319154707 *src/gt_to_popsum.cpp
4fb40c6cd62b53cf5109cd95b5eb57ce *src/is_het.cpp
849ca05bbb21ef77471ea0beb395414f *src/masplit.cpp
284447efcb5325e2c4ca84a6ee273d95 *src/pair_sort.cpp
f63c4a37fb95f117f6b9b7901ece743b *src/rank_variants.cpp
ed6f1c1f531306a0f34b7d1c171f6c5b *src/read_vcfR.cpp
a39094d643649e3a05a63e5e847dfca0 *src/seq_to_rects.cpp
f1d94f6ab2b1de592ab47d82b360ef67 *src/var_window.cpp
79d7f59a00cf9b283a9204415091b224 *src/vcfRCommon.cpp
c75dbcba07c02bcb4926487cb25a2e66 *src/vcfRCommon.h
f266f188232d7bf72ab1cd5dc6d52176 *src/write_vcfR.cpp
49a5b59f3e52f27106faaf21e481781a *tests/testthat.R
fc49ea1ddd55f2f801b4e7445263631f *tests/testthat/test_010_vcfR.R
034f613dfc4a99e5d74b19d5652d8ea0 *tests/testthat/test_011_vcfR_methods.R
ad386ad75a6649f32d3d954eff0a14dc *tests/testthat/test_012_write_vcfR_cpp.R
e7995fe5aa27cd7d3d864a2640ba76fa *tests/testthat/test_013_read_vcfR_cpp.R
5402be1b6ff747b2e97ef904abba03ed *tests/testthat/test_014_read_vcfR.R
82c6af840053868fa6e565265c7d750c *tests/testthat/test_015_write_vcfR.R
f53d2c49bf3a8eb34bc6c530e9c7fa95 *tests/testthat/test_020_chromR.R
76310a7ff3f02d15d5eb5c7698ec6bf7 *tests/testthat/test_INFO2df.R
9f340ea590c77a6ee53469a4c42f4ca4 *tests/testthat/test_ad_frequency.R
e9bd788a7b559a1a66ca5ac6a7d32e15 *tests/testthat/test_addID.R
8049a0f9015b00c6e12399f593348a78 *tests/testthat/test_chromR_method.R
2a76c25a4790164da8c8c0da5150d5ed *tests/testthat/test_chromo_plot.R
74539cc0390bdb38b7b75c78c3cac835 *tests/testthat/test_conversion.R
93d6020e5d7781fe7f58f34b91c4f2ca *tests/testthat/test_drplot.R
6286d3e472fe2f03a8e55fed933f9c89 *tests/testthat/test_extract_gt.R
4b1c0df48be5a3eb1e265fad32432f31 *tests/testthat/test_freq_peak.R
07055da3afc0ee6724d37a3e397d87e7 *tests/testthat/test_genetic_diff.R
ce481a57c37aa18b07e1550e7cffca1e *tests/testthat/test_genotype_matrix_functions.R
c8e8d195872537327d9b7298c2616ae5 *tests/testthat/test_get.R
df1d0b631ba15cad96477515c7c368a6 *tests/testthat/test_heatmapbp.R
4f4692054401c471873774a15b7c6e88 *tests/testthat/test_is_het.R
428a32c7653311a2c9fe6bb242a78864 *tests/testthat/test_maf.R
f1812c3fc989332d5b80d3046a68277b *tests/testthat/test_peak_to_ploid.R
1b7ac11b497167467306b0abad9f0795 *tests/testthat/test_proc_chromR.R
2b8826f4019ff09c8c1d0f2d8c4ad2ed *tests/testthat/test_queryMETA.R
0bf893d1d02410c41bbe40adf6b79dd6 *tests/testthat/test_query_gt.R
fd7f36f874bd68b8232dc0aa69b34a07 *tests/testthat/test_rank_variants.R
891dbcca35c904c31b770b5e0251ec1b *tests/testthat/test_rePOS.R
b275126339aab39b26a91c85e5b1e36a *tests/testthat/test_summary_tables.R
45b236ae9e4d521b9123acfa0f3473b9 *tests/testthat/test_var_window.R
f630212dbc031afc6ca9164de8e976f3 *tests/testthat/test_vcfR2DNAbin.R
1a72c532bbd87d61eb807ab468431729 *tests/testthat/test_vcfR2migrate.R
9036a5a9e3e278e45f285f383df92343 *tests/testthat/test_vcfRtidy.R
bb3765daddb5f32127f3e5d818a4a19a *tools/pinfsc50.png
f117bba51d89249c5b51094112bc6b94 *vignettes/converting_data.Rmd
692ea16470b9576382b31b660c09f494 *vignettes/intro_to_vcfR.Rmd
3cdf661081f2c22e775deaa33274b68f *vignettes/vcfR_flowchart.dia
414b8298b74306d9d298e6315b23b00e *vignettes/vcfR_flowchart.png
f1e8131533d69de3f0d6a25229d2db59 *vignettes/vcf_data.Rmd
f86063812657997c8c822a6a47e4bd14 *vignettes/workflow.Rmd
