abf95469a809c1d6a2c828171cbe781d *ChangeLog
808eda0f3ffbbccedbd5cfaa9b73724c *DESCRIPTION
a343c9796c291f286ad8dc9de5ad61ce *NAMESPACE
e0fc3bbab3bf18986bf9946ec5aa2e7c *R/vcf2geno.R
ddeb76cd34e791893c0f539fdab879bb *bzip2.LICENSE
dbe49534045bebcd393d3d0d5ccec28a *bzip2.README
b917ec015027fb115d0399d7749a4434 *configure
62b200470d25c49dd70fddf5ecee16bd *configure.ac
e50d0bb94d5fd14b4cf0141e2d5979cf *configure.in
a30627f5fed64983816d94ff2f90369c *inst/vcf/all.anno.filtered.extract.vcf.gz
eebfb3d8260a7def9f29034931b7f9e2 *inst/vcf/all.anno.filtered.extract.vcf.gz.tbi
06a909cd7375fefa856dd550e5cb9dd4 *inst/vcf/refFlat_hg19_uniq_gene.txt.gz
73a5838a6f5a3cf1fed50aedfda6342c *man/readVCFToListByGene.Rd
183e670c15f862ff2c46c9e2f6033a51 *man/readVCFToListByRange.Rd
25ad0a39b9cb960ac558ecb72dbd053c *man/readVCFToMatrixByGene.Rd
c6ad60ba3d574bdfe41e15b1e0191fa5 *man/readVCFToMatrixByRange.Rd
2f5cbc362c1da49d98b4881d1d3c3732 *man/rvmeta.readCov.Rd
1c8d011a894829bd8f83b0414fcadc2e *man/rvmeta.readData.Rd
a7b2628c806954871439631b9b825f75 *man/rvmeta.readScoreByRange.Rd
bd4fe20b0ae9facd012729d73a73a29c *man/vcf2geno-package.Rd
f2dfc84a2dfd0290c2dc8d910bee0b53 *src/Exception.cpp
189d04f07548871de7b7b902ea878599 *src/Exception.h
f53133ff5548567e8f4ecd9a38aeb8e7 *src/IO.cpp
bb0112f0779ed31badd410e1b4d9a405 *src/IO.h
6baa02812c68fa835564a41126583101 *src/InfoGrepper.h
a1a3cb4a8d9b6579c426586f476948f8 *src/Makevars.in
d41d8cd98f00b204e9800998ecf8427e *src/OrderedMap.cpp
3bb47f80b0f3c2133f74a5932696b6a0 *src/OrderedMap.h
10a321be45f3709dc6e77da323e0bc98 *src/PeopleSet.cpp
cbc062a62e16c021f8f7595252018847 *src/PeopleSet.h
7eefb9404550500c36612a2de43ba771 *src/PlinkInputFile.cpp
b81bc92c05ddc24cec62ebad8bf0d32d *src/PlinkInputFile.h
70bccc3a5d23fba307bccba4ae22060e *src/PlinkOutputFile.cpp
b646be6c29bcd82826accf0191394be1 *src/PlinkOutputFile.h
828f6fd7fdb9aaa786740f088cd8f1a1 *src/R_CPP_interface.h
1d06e604ec6ee8cd7aef6010cfad973b *src/RangeList.cpp
74869699a62a6b303fd418d05e384b13 *src/RangeList.h
651f3fe05ae53bd56905ddf29c1a5be6 *src/Regex.cpp
5da2057d8f581e57c6e570528ed6da3b *src/Regex.h
387eb89d34fe3c3d18b2d93a734d582e *src/SimpleMatrix.cpp
ed89460fc7151a3bfc200b066c30ee23 *src/SimpleMatrix.h
8daf08291f0841ac552190e1271cd0d7 *src/TypeConversion.cpp
dbdfb2465289101b4378d11b173c6dcb *src/TypeConversion.h
7e44626bee9969473c4970346f7693bb *src/Utils.cpp
5dbcd95abfb2ca240e306f1f589ccbde *src/Utils.h
1e917beac40230572aa04d79f137bad1 *src/VCFBuffer.h
6dd8895b1f308a6f48202f0f54ee7ad2 *src/VCFConstant.h
5b880d5d70e2740296963c2fa59b5428 *src/VCFExtractor.h
10cf8556d53e684ce0a28d8d6a606d6f *src/VCFFilter.h
938cd6107b805c0c53c71202c14c9f02 *src/VCFFunction.h
117ba480aba2f66b889425ade7ff9d69 *src/VCFHeader.cpp
7e6931624f11fe9c3a4a5315ae16b080 *src/VCFHeader.h
47590e10745ed94857230e87700200db *src/VCFIndividual.cpp
ff41af0fa67d5e91ccc7d9b66986a9b3 *src/VCFIndividual.h
552321d7a3b6481df8133c33e0d5c104 *src/VCFInfo.cpp
1da0a696fd6611b44493ac4f710b7d87 *src/VCFInfo.h
0ca54f5c0208ad7a2832b61a21ac06b4 *src/VCFInputFile.cpp
8879e7edd66b93212dea170c08d51dcd *src/VCFInputFile.h
6caf43602604737c902816cf01ce37d9 *src/VCFOutputFile.h
4a0dd3bde829fc6657bdcc75cbc5fb0a *src/VCFRecord.h
58c30e048f64b8bd851799393a7df1d5 *src/VCFUtil.cpp
e9e2d549f9cdaf5f06505e30fb64ef8e *src/VCFUtil.h
c99de6988f92eec0eb978e4298303d7d *src/VCFValue.h
ae3bbb54820e1d49fb90cbba222e973f *src/adler32.c
aba13a3883d7d117af33a6d8fe8c1ed1 *src/bam_endian.h
a9f135cf6c369a13d43510eaff9c983b *src/bedidx.c
fe6a5631b383674ae7b5f7113d793206 *src/bgzf.c
661570612ccfc3c99bf6a15c73b3742f *src/bgzf.h
da5cc4b39d85aa5306d37b505915a9a7 *src/blocksort.c
4472015145411b5144461cc251d259ea *src/bzCompress.c
ece1cf781f240938187887bf2cee8dba *src/bz_internal_error.c
74fa7a7ffdc511e1ef964332a27e05ab *src/bzlib.c
433684bb4b14928660d748d3c65890a6 *src/bzlib.h
433684bb4b14928660d748d3c65890a6 *src/bzlib_flymake.h
423e3f753a9422952a24e8d85ab5da3f *src/bzlib_private.h
6a0331bd872c8053af4bfa357fbd5415 *src/compress.c
489b8a6aa60db6b1f1b22db40565de9e *src/config.h
b2054be7a4b331382e74bc80fda23fe3 *src/config.h.in
1339c92938d2594a6eecfa21c374d1b6 *src/crc32.c
f28d16b67efecdfafa0d816a7d982124 *src/crc32.h
c388b373b62850024f2a74fe6bf8db53 *src/crctable.c
0d9172e7f795bfa145a86c5dfa8edc8c *src/decompress.c
9b13d7661539c4d23a89d3d75d2170cb *src/deflate.c
a76eecb979102fa97ffb710f142ad2f9 *src/deflate.h
29d02cff161bde3e4e717b25a2ab7050 *src/gzclose.c
c2378bfb5d671b91030441266d2ecf45 *src/gzguts.h
b299fbea2ecb0ff33a0b3cf3c6b33f3e *src/gzlib.c
d0e145140eefec33fc546a32c7e4cc21 *src/gzread.c
9142e7a574dfa1864856351937df8eaa *src/gzwrite.c
ec0f167e71cef3db1679b8bb5d2426a8 *src/huffman.c
b515e5957a0b2a756bbae45f408f87d0 *src/index.c
4b7a7db0fc95f2cc50361545857a8550 *src/infback.c
acbe5c3d4bf679e6a41eed4569abfa93 *src/inffast.c
f3669099d3f571dbc0426401ed5f50e3 *src/inffast.h
7fa3e91804601b6618c915b76a8dc332 *src/inffixed.h
27d100516db4c9dcf46ae8cd2c98f803 *src/inflate.c
8f1b05cdf36a269882a955071b140162 *src/inflate.h
111edb79f982a014876b4a830372aed2 *src/inftrees.c
ec87be89b9bcca8ced80a70f857e823b *src/inftrees.h
48cd8fc534ffa1468ad3a66fcf280712 *src/khash.h
9ea63cefa7d19cd57d52f41b756cd052 *src/kseq.h
5fbd36095602ed2fd64556d5f4da27f5 *src/ksort.h
002183a8bd7985f13aeed46440503c1d *src/kstring.c
b22824b2f9f72abb22fa6c24ac74583b *src/kstring.h
1fa3a687fb32f1dce8e7b5f11453398f *src/randtable.c
9ea09d7361b319cb5e4ca2d752a70e9d *src/tabix.h
1cb01bcc5130eb867b23d6cc38745b4a *src/trees.c
51fdcb3e2ccf60ca13c06920c89296a3 *src/trees.h
e62eee8757fecfc2cfbf2dda8956097e *src/uncompr.c
189bae611a53101b31efa31240f37e87 *src/vcf2geno.c
87a083203b7c235e1a9d841195ae90f7 *src/vcf2genoLoader.cpp
bfe4b65931d18015b6a4eac118f8986c *src/vcf2genoLoader.h
4719d47b33ecfa5d4cc595e6812ce1a3 *src/zconf.h
15787c30e4c4388fb2650ed608d2abe4 *src/zlib.h
e254a40578ee9bf35e7d7184cc658fb6 *src/zutil.c
0b31d0c893d2f609cf5d5833e3c0b21f *src/zutil.h
21a55306a673542c4fcf2881850a61ea *tests/tests.R
