d8b5120bf4bb1ea064df42fbf5234ce3 *DESCRIPTION
cad39973017c32c3830335406eb03d4c *NAMESPACE
b48329c7b1c3e485c4a9c040c948dfab *NEWS.md
8e41aaa5f83e7481a9dde51a18ac0635 *R/RcppExports.R
aaaf4c273f492958d37a8277610de623 *R/ashdog.R
18dd4f40d6d8e827d14af6e91b68a66d *R/data.R
3fdfcde2fe8cb7cbc690bd77ba4d6747 *R/multidog.R
db76ea5c1cbdb111c62e4c5b717e3f12 *R/oracle.R
f325f7b19b6ea889ba41ad7c94cee6ec *R/plot_geno.R
871f0ee15c32bb2f6ee6c0696725867a *R/pp.R
f50ae15b76e7c26e47b726741be6c0de *R/rflexdog.R
9d9708d5bbe5631138efc607388d7eac *R/updog.R
bb6b441f3cfcb96cab903a6f73377aae *README.md
0f3811ac3f0dbb4f206c322bf8d449c3 *build/vignette.rds
7255011096751b0d21c32d94dd13f82a *data/snpdat.RData
0f4eae7684ac52f9450a8505a9accbe3 *data/uitdewilligen.RData
bbc935eaa87bb7418419745536d8ef44 *inst/CITATION
c7daf272e7c9c2a1c3b5025ca6c44098 *inst/doc/multidog.R
d515c28cfe10859f34e8dc5880bf0f57 *inst/doc/multidog.Rmd
df159b0ce7bd7286d5ec3a0cedfcb9fe *inst/doc/multidog.html
ecad164647e278784629d5ea484f65d1 *inst/doc/oracle_calculations.R
c94cbd4ccfb80602966f0cadc91b7621 *inst/doc/oracle_calculations.Rmd
c52ace552da7ab25fb67693e58da071d *inst/doc/oracle_calculations.html
c4db3f54ba9595cc67585fda5682f013 *inst/doc/simulate_ngs.R
012bd27eb53ea840ed99cd5d9e7f264e *inst/doc/simulate_ngs.Rmd
b8d1e0444b9b96c548ad9d420168f8f2 *inst/doc/simulate_ngs.html
8e5cda5f0b71ec3afccccb3f0d3e91dd *inst/doc/smells_like_updog.R
e6eced298ee4d66c03b781788b552440 *inst/doc/smells_like_updog.Rmd
7f36abe47551b70f7f2db8dc832a3fff *inst/doc/smells_like_updog.html
fbe7aea4f6ba51339b0b2e115a6a09e0 *inst/include/updog.h
cd59973a8fae2b64b3e30a32d45d105a *inst/include/updog_RcppExports.h
8ca86f36003deb771b027d383035ea0c *man/betabinom.Rd
40ec12c43762f53fc5238d0f9835d561 *man/filter_snp.Rd
34d42fef94463689e6c6678e873f6160 *man/flexdog.Rd
7127eb9559e9116fb6fb7c47d23e4331 *man/flexdog_full.Rd
f6fad2d69cd9f3a83557cee51bc503e3 *man/format_multidog.Rd
ee50dfcdbcda46c948422caa9c2fdfee *man/get_q_array.Rd
84d5f137c106948afbf417fd58375138 *man/is.flexdog.Rd
26fea49b5c6b84bf33b046b9f95f70d7 *man/is.multidog.Rd
cc6c1c84427c38f4235d525a8efdcac0 *man/log_sum_exp.Rd
3515444142990dd8471e845e3402be99 *man/log_sum_exp_2.Rd
d3d2605c59f477a31d1cff93a0924aa6 *man/multidog.Rd
267bc8b9144f5dd947ce5ebd4e5050c6 *man/oracle_cor.Rd
a8ebc7e02f272c0d92123b7c6794c7fa *man/oracle_cor_from_joint.Rd
c3e540d2093e01cbee5d7f90a2e5498e *man/oracle_joint.Rd
ef9c7cc4c2c9aa52808c72f9ded09691 *man/oracle_mis.Rd
db2e9eaf173e5a3337940a3a52d0d20e *man/oracle_mis_from_joint.Rd
c911c5665853fa82a1874eacbde983e1 *man/oracle_mis_vec.Rd
b1be37c6a7d7e1d1c53fb73f345a5cb2 *man/oracle_mis_vec_from_joint.Rd
37c502f89c34f51a7d2b7c628324e8e6 *man/oracle_plot.Rd
b6f1a1bd067e88b638b2b29b20810404 *man/plot.flexdog.Rd
336d368714fb052739e4b6e1794bb971 *man/plot.multidog.Rd
01249ff6ac696c0436c6c320a822b54e *man/plot_geno.Rd
297c7f9fe89798522c6fe47bf769d258 *man/rflexdog.Rd
c46863b60edb40e448aa7cb371b5e79d *man/rgeno.Rd
db259c2e2d4996d4cabcbc670f720e41 *man/snpdat.Rd
3680659dc8d147bb62f7d8605bcfaabc *man/uitdewilligen.Rd
6f963a45a464a259e1e22b6eb567d72e *man/updog-package.Rd
5b5d9202ce30cb3906c8b1466919af59 *man/wem.Rd
ec965e0b76f3e162764d8b27a0def6bf *src/Makevars
ec965e0b76f3e162764d8b27a0def6bf *src/Makevars.win
f7fc2e50b9ea38805def720e87abe097 *src/RcppExports.cpp
a4ddc0e166f9e5aa708ceb77f70fa4f3 *src/betabinom.cpp
2f88adfbacf472ccd3271019a8d15d1d *src/em.cpp
69cb958fb9bd6fea39a4056d769e0acd *src/flexdog.cpp
cfc97c10a1fba89717b7169d0266bd0e *src/gradients.cpp
2b890edf68d9db185d110a264830eb2b *src/mupdog.h
c6fd8a32d5b4ee2367483ac7eed4fcf2 *src/objective.cpp
5bfbf6ba7a761ca10ee74196f85dafb0 *src/oracle.cpp
311a7c89f721c16ee70def268dab0d54 *src/util_funs.cpp
2d47e9e17ec521ff1bd6ce268925337a *tests/testthat.R
eecf5d7f8604adab1c8ab1ef44aceae8 *tests/testthat/cvx_prob.RDS
b2ac6c40f3e45791917b2fc60f8192b5 *tests/testthat/out_err.RData
7ffd93117d0b5d749866c960e0d09755 *tests/testthat/test_dbetabinom.R
3d824bf825848162d6440f4065e31bf5 *tests/testthat/test_f1_genotyping.R
68c504933affdafeaa3c8710bcc95fbd *tests/testthat/test_flexdog.R
e455b4b804fa2fdb7097a606b136bac6 *tests/testthat/test_gradients.R
0ab0d24c94c9312b76cd0ec27c7186ca *tests/testthat/test_objectives.R
9d0fe45c974e569dd01958e3ec3e1268 *tests/testthat/test_oracle.R
f91f6e4fcd35bd3866e5f69be8dfc3bf *tests/testthat/test_rflexdog.R
8b6440365df25940e9b5c2fc2401df5b *tests/testthat/test_utils.R
9cf666e7f5bce554a75d1912d9f2e2db *tests/testthat/test_wikmat.R
6775e60c5a1a5682119d7c6d3c5ffdea *tests/testthat/testdat.RData
d515c28cfe10859f34e8dc5880bf0f57 *vignettes/multidog.Rmd
c94cbd4ccfb80602966f0cadc91b7621 *vignettes/oracle_calculations.Rmd
012bd27eb53ea840ed99cd5d9e7f264e *vignettes/simulate_ngs.Rmd
e6eced298ee4d66c03b781788b552440 *vignettes/smells_like_updog.Rmd
