7cc7b0d4cb306ba7568851ab9f5ce62e *DESCRIPTION
2938b353dceeb4e47b5ad1dc488923e2 *NAMESPACE
176889ce3aac4758ad57630f902e2da5 *R/calc-methods.R
a8137906cdd68fa915ed71a886484e35 *R/check_methods.R
8310c9ae52d501f2c231995c042f232e *R/cnvrt-methods.R
e4ceb21b4909a187bd360f399276a2e2 *R/gen-methods.R
933e293d231176cfaa4f5dbe6469faa9 *R/get-nd-methods.R
530b89e78266540bb95640d4380c3bd1 *R/get-nds-methods.R
f826395ac0793e8fb24679264f7067f4 *R/get-spcl-methods.R
4a11e7fd8da85975e104ff54726df22e *R/manip-methods.R
ff6d1ecb1e174e87e2831baf69081215 *R/ndlst-methods.R
41ea4b00971379d53dabba40bf89d0f8 *R/ndmtrx-methods.R
edaf45aeaedea7bbff34a91f423d6b78 *R/node-declaration.R
ac58d98c1ccf1342d840b61c2305c3b3 *R/read-write-methods.R
2759fa27b6ade02c3eb4e74e0e32a746 *R/server-methods.R
3fc4c1725cea66d358d2515acd62c11f *R/set-methods.R
f932c8533be9dde93025c9dffa206a3a *R/treeman-declaration.R
ba57faba9f62334261a97f91637b0e76 *R/treemen-declaration.R
63a41483555348276aea3d7ba321c3f3 *R/update-methods.R
b2448099c97dcd9b7e8c098723ab48e7 *R/viz-methods.R
d41d8cd98f00b204e9800998ecf8427e *R/zzz.R
5880075494f99e150a2ab1d97a665bad *README.md
7a139742dabbda3cd2f2f64dfa528f10 *data/birds.rda
ceabd491f7d8c631cb436dfd51f03849 *data/mammals.rda
5003073647cecb0e1f7c29c5ea383a8c *data/plants.rda
0120470de866dc4472ee904534c67966 *man/Node-class.Rd
61723a01cdbe980d5f4028c1d487a065 *man/TreeMan-class.Rd
670a361b983ecdbb7b3ebaf57e6b575d *man/TreeMan-to-phylo.Rd
90ec31d9542c0d82e439d14e565052ad *man/TreeMen-class.Rd
ab17c8f5dd8d21e738d93a60b9ee3be7 *man/TreeMen-to-multiPhylo.Rd
1daa17f2155bfafde0b4b94e4aa2324a *man/addClade.Rd
ed52691d970e0a9663a8a63da0f99226 *man/addNdmtrx.Rd
aa08ea640e28f6afa0070e0c81721b6d *man/addTip.Rd
783aacbade75a44534adea3951dba3aa *man/birds.Rd
5b79c6c12163f9b2777ff1f8c4e91a5f *man/blncdTree.Rd
360b7dfa8ecc0dd0849434b65fa102d9 *man/cTrees.Rd
e923b903acf4cffe94118b0bb7f8ac02 *man/calcDstBLD.Rd
3e958f7ba3c0240dac31909039e7dc93 *man/calcDstMtrx.Rd
43da605f91715363da9caaef536b6e05 *man/calcDstRF.Rd
bbafd68aa8bf3070ad3197e24d6f0163 *man/calcDstTrp.Rd
92e7a12b814b31f8e13d9cbaff540657 *man/calcFrPrp.Rd
7a4691b8e6b3377f079d48b327c19c6d *man/calcNdBlnc.Rd
62f2e2d616bed0fdce45c4769c4706cd *man/calcNdsBlnc.Rd
2bfb4deddcb8ea9b69faaa745b74f636 *man/calcOvrlp.Rd
26762d216422e1b745d484fbc5f1bb90 *man/calcPhyDv.Rd
39cf08b7dc4f7a3a7bfe6c326dbdd915 *man/calcPrtFrPrp.Rd
8d31647c51b0fe4c17f255fb0f3121c8 *man/checkNdlst.Rd
d623b3f5ffb00b85b06585b92354e96e *man/checkTreeMen.Rd
3e358c280a57e36aa0067c66b54f7b56 *man/fastCheckTreeMan.Rd
8e62e4ac42159fb7299ed529e1a30dbd *man/getAge.Rd
14a019b3dc858b499f234658c8af5aec *man/getBiprts.Rd
28e8243b9337f0a544589d5d5b640081 *man/getCnnctdNds.Rd
d55e149cacc89045c509f1552cb0103e *man/getDcsd.Rd
82c0285b3fffd618b40620d4386b084e *man/getLvng.Rd
ce8746dc32a7379e0e6600c80f4a9582 *man/getNdAge.Rd
434c11dd6ce4aa54d8927894a6c6fd6f *man/getNdKids.Rd
013e722f13ff31688e494d791f87075a *man/getNdLng.Rd
7e73d9b31e7b5afd58af96cf43395a2a *man/getNdPD.Rd
0adb5f176253af56e44ca437f7ed8b49 *man/getNdPrdst.Rd
559abaef0c702919b4a060b09fb999d4 *man/getNdPrids.Rd
3b47aacadea9b964c690ed945cc83041 *man/getNdPtids.Rd
024e397883f917fdc67291543ab1275c *man/getNdSlt.Rd
a4625ce2b52848ff676894f65864ad90 *man/getNdSstr.Rd
4211c974981c7d9a85bc0b9ca45175b1 *man/getNdsAge.Rd
48ed9188065c3978a9bf31c504b2dab8 *man/getNdsFrmTxnyms.Rd
844624173d3e48531185d37218f1463a *man/getNdsKids.Rd
26402a4f96894ce5a47501f0ee2bf492 *man/getNdsLng.Rd
a87384c86bf3517e9058f6fa8a50a085 *man/getNdsPD.Rd
dd2c4ce9132ce5abfa76fe6eff556225 *man/getNdsPrdst.Rd
96dba5fa64b54856d96e7e0b88752b42 *man/getNdsPrids.Rd
eaacfe2d8c65216444ce31bdd80d9f5b *man/getNdsPtids.Rd
fc0f665d8e6f18dab30d9369ba2316ba *man/getNdsSlt.Rd
370ec90d0bf08f414573798ffce54bca *man/getNdsSstr.Rd
facc95313a74d603747234347d3b91bf *man/getOtgrp.Rd
18b71bfeacc107a4b256b9f939b4f232 *man/getPath.Rd
03827d8d37e2e7130547921259796291 *man/getPrnt.Rd
54dd7b026261715d3707a44770402b9a *man/getSpnAge.Rd
259ea6786c69820638d47aef84ee3213 *man/getSpnsAge.Rd
8ee8de6309aa736746415a452135c60c *man/getSubtree.Rd
1471e94a0fd4b9ca1688fd4788cafb2b *man/getUnqNds.Rd
fb6681fefb63905a922b566d70b75002 *man/isUltrmtrc.Rd
04712b6efe4df956fc34650c0bd15d5d *man/list-to-TreeMen.Rd
78fa832601fe7ab56624bdd07da93126 *man/loadTreeMan.Rd
d518715ab8dfb373f6eb36b54668c6ee *man/mammals.Rd
61aa47a7e7c25f27cdd223d1dd2d4c9d *man/multiPhylo-class.Rd
5c042a302240429f4fcffec850ceeb93 *man/multiPhylo-to-TreeMen.Rd
acc65efcc39b179ef3d88a665b5785a1 *man/phylo-class.Rd
48df386a3b87d6b374cb0ce3d2c2c3bd *man/phylo-to-TreeMan.Rd
e89947fe37aafc68229dcbe28ef5f7bb *man/pinTips.Rd
d3b0e1bee79c42ff46277b48a8f8983d *man/plants.Rd
0217b0d5e5923284733f07edc712523f *man/pstMnp.Rd
517c727033427e6b1a80fc69c1da438f *man/randTree.Rd
094b94065723d921dbc9e46fc18dbdc4 *man/readTree.Rd
aeda883b56788b2187d08ceb465f661f *man/readTrmn.Rd
6af54ef367040eb994d34ea9a1ad84e0 *man/rmClade.Rd
8810cdb655652800b5e46aa6c2c1c4a0 *man/rmNdmtrx.Rd
d1bc0304f28bfd74404d2d87a564278a *man/rmNodes.Rd
bd2f55bf12828e6543caa8b18a869874 *man/rmOtherSlt.Rd
a6ca3800c96cbbcb3a56b7ddc57f34d8 *man/rmTips.Rd
11ff00a541a888f9cac44bd4c84f4409 *man/saveTreeMan.Rd
69ca98f08d32587c971c28b8183dad03 *man/searchTxnyms.Rd
f4df3e771aba4a8881b4ac9a8c3cb3a8 *man/setAge.Rd
a953becf2d81f1d91d44dac660d51f7b *man/setNdID.Rd
154fb7e09b676e4139591e22537d9434 *man/setNdOther.Rd
0840578e599ec8cb1c9aac9284697343 *man/setNdSpn.Rd
9b4e0adc0969a6a71436d1b98e46fb55 *man/setNdsID.Rd
98f7e0a9ffc22721aa344eb3812d6b3f *man/setNdsOther.Rd
f47054b2f4e310eb10859eacd7f50a03 *man/setNdsSpn.Rd
31c875fdb0e306d243d1420e71d96a78 *man/setPD.Rd
85491839a0aa205709d421207f1792cd *man/setTxnyms.Rd
b97fa0602a811085cb7e0755a968d395 *man/taxaResolve.Rd
4d24e5968ba74c2a4a986218de6abaae *man/treeman-package.Rd
10a772ce8ef396c4049bbffcdd227909 *man/twoer.Rd
86da3fed58474436a3a2b7579d18587a *man/ultrTree.Rd
e45b141e2d0670da42c6dec9c9996852 *man/unblncdTree.Rd
51b3248961812d1149a22f593ff4edbf *man/updateSlts.Rd
7eccda6bdd0769fa2b204e7f6a0e9916 *man/writeTree.Rd
32c016ca136914a80adee07f2ff445ae *man/writeTrmn.Rd
0456d70289de2ad9e61e0a2d38ebcf89 *src/get_tools.c
1c208ca3f0b9ecdc902cb867b103eae1 *src/packagename_init.c
15b02614c056cac39ba800d5e58ef6d5 *src/read_tools.c
4bc562139a57c9a80db60b74ed0d2da8 *tests/test-all.R
7fc8ff9bdd73543902eadd863051b7e9 *tests/testthat/test-calc-methods.R
d955b20d000723f100ff06531b2b9c99 *tests/testthat/test-check-methods.R
ba7f89196091c82fe3b5b7c1fb4fc063 *tests/testthat/test-cnvrt-methods.R
afadf5ad107a650fa2315f3dc62f7355 *tests/testthat/test-display-methods.R
ccc55eb1b1f13bb10a7f5900c8d01e9f *tests/testthat/test-gen-methods.R
b6970dc6561ec2e7bd464a3003e13841 *tests/testthat/test-get-nd-methods.R
8ad0a5970cd7216a939eafb3c760dc19 *tests/testthat/test-get-nds-methods.R
a50563b607075b8be81c85147c4fae00 *tests/testthat/test-get-spcl-methods.R
bfaf676bd79c7753a06e596d9d1b1d8b *tests/testthat/test-manip-methods.R
0c2f328e3e366ac41bc6872234538a72 *tests/testthat/test-ndlst-methods.R
ebd0e35b1ec4400b6d5eb12cb608509e *tests/testthat/test-ndmtrx-methods.R
fa3ddee62e5023595e072603bab9dccc *tests/testthat/test-node.R
049db098ba218f710664f9f2819e0941 *tests/testthat/test-rw-methods.R
2bfa3f15a59f85a5fa0034f3c68b8d3a *tests/testthat/test-set-methods.R
a602fead66e3ed01497f43a8a1e7b3d2 *tests/testthat/test-treeman.R
acda92b2ae365df1278f0feae87f137f *tests/testthat/test-treemen.R
572cf0e7b54fc019cb07ba49fd1d2eee *tests/testthat/test-update-methods.R
8c26a6e99597331d4281f64d449fe6ea *tests/testthat/test_server_methods.R
