5af5a9715bb968da2a68f5bf5ca34969 *DESCRIPTION
d4f1dd94ef9025d01b94515e676a4ba8 *NAMESPACE
267d9ee031ccae5c4466a50228b5eb85 *R/Hstats.R
e7d6448088f62e0bd75528da5ff8fb74 *R/LDgenepop.R
2ad65cba01c3e14d60fd5e62d7b986bf *R/RcppExports.R
111c259be4d650ccfda8867594ab0954 *R/TiTvRatio.R
c35fc8e1377889179f4829433808d163 *R/alleleFreqFormat.R
0cfa9d482fb3e899c4957dae03fb8a05 *R/alleleFreqs.R
6f954fe966feb871ea4f6e74c1f0ddba *R/alleleSplit.R
fd1ff2b7ebc3d8f61c4d4d842df80727 *R/allelicRichness.R
5211744477a3d117479f66a54fbff047 *R/arlequin.R
ac9679ccac0821cdece84472fe250475 *R/as.matrix.gtypes.R
75280f62bb4c4486cc8caa533f28820f *R/as.multidna.R
4948969979dc7f45b5405bfabac493ff *R/baseFreqs.R
3cbc27ba668e18affbe0e79f3ac40a19 *R/clumpp.R
79bec7c0e46533c39b9ec9f23ef742e6 *R/createConsensus.R
7eca685b0d49296a6c8348543582f973 *R/df2gtypes.R
f2c146530ec9c1aa7c51b226c3d124b5 *R/dupGenotypes.R
b4dc646e438be4ff19bf851d941929ad *R/evanno.R
9ab76029f53954acbe05ad3b7dc38a2f *R/expectedNumAlleles.R
fbf58ead16e2768d73821bce36d8fd41 *R/fasta.R
cc03a32593e65f556d3298ca250c630a *R/fastsimcoal.R
4352d6f2f703a29607a273c7b191605f *R/fastsimcoal.input.R
5bd80e3aa92cd89b924ca51abc28175b *R/fixedDifferences.R
8b5ac96fa48b53cc4fddc670299465f4 *R/fixedSites.R
3176aaddc547cfa8f589cc4a7ab0bc09 *R/freq2GenData.R
d445eb2ea358a18ba35b32a3423f3d9e *R/fstToNm.R
f7b474aa539c681cd32ae64420d4f6ce *R/fusFs.R
5767d52ed62154df908d385f42362dda *R/gelato.R
5cc6bf354fb04e7e7eb2ba1d4b40fb7b *R/genepop.R
cb898e4697aceb977e28f6dc8ad3409f *R/gtypes.accessors.R
8d8c5ea8e9810d632f583abbac2d2ca1 *R/gtypes.class.R
331bf2136c85580ca5de748982292c02 *R/gtypes2df.R
a611d8ca2dfcaf220d2fc8d2a53834b3 *R/gtypes2genind.R
964f6c16f318b95501d9a535d5a33b0a *R/gtypes2loci.R
32f671add46a4ce79af58e7f019d93e0 *R/haplotypeLikelihoods.R
d5a45ad05fea3bf4cf0e0a47d977fbf9 *R/heterozygosity.R
eb3e5c3eb7d5baf7146f1ba6025ac0c8 *R/hweTest.R
112ae3f5117373692324d26404f16423 *R/idRows.R
fad9395da3385aaa13dca0ff9a173cea *R/initialize.gtypes.R
953d07c8f441258ca2d42b983b5c7581 *R/internals.R
f781fcfb1a636399150490bb1de77148 *R/iupacCode.R
95ef9093cc508e327f30b09ad92d1405 *R/jackHWE.R
ee6d70445f219063a8e33088ce80e764 *R/jmodeltest.R
0795484065fad3d218b0838bece5b777 *R/labelHaplotypes.R
18990727396437e6bc84fdb26461be19 *R/lowFreqSubs.R
1bf9b0790a9f93e30adc2c143f011f5e *R/mRatio.R
c2986b6df06b5d351c5d4ee98b17acf2 *R/mafft.R
7e48643725cb604ce2675c87b011beba *R/mega.R
f5eeefbd9bcc1bbbd9cc42d45633cf8d *R/mostDistantSequences.R
a59ce6f57225523668ad8fd00a50232d *R/mostRepresentativeSequences.R
313512b526c44c29a6fd020691f94a9c *R/neiDa.R
a870fbd4a11aee060f843376d16d9af7 *R/nucleotideDivergence.R
616040c7cd778930da7b8f1b7311e4a2 *R/nucleotideDiversity.R
ee7b0c1d695809a178a0dd00593c1f3d *R/numAlleles.R
cca62115331917d6d748259e4159e1d8 *R/numGensEq.R
6912a837d4228f89bfc9569a5e0b8638 *R/numMissing.R
b99f7537f40ca1ea7a4ecaf268a1ffcb *R/parseLocusNames.R
76eb3d53bdf8264f1c71c7836d4afcfc *R/permuteStrata.R
192230352bcd5704857f28877c417477 *R/phase.R
1e2437c4d9f1a07bd5d876412ea723aa *R/popStructStat.R
96e37b3d4b246a86178851d40d339bc9 *R/popStructTest.R
7878798e49721745a7e22b4a689364a2 *R/privateAlleles.R
1d773c84fad66bebc82da219b7c3b948 *R/propUniqueAlleles.R
f236fe8fda85c669793785bb1789ef31 *R/qaqc.R
93937c2b518ed523c7c1b53ab589dd57 *R/readGenData.R
d98438bc112df723c6c764e5f23ee80e *R/removeSequences.R
8b93d95955b8ea5a23a3ed042dd814fe *R/sequence2gtypes.R
8c3ca18ed48b330bd71b7b20161956fc *R/sharedLoci.R
88851ec1167f5084ac8241a732be98c0 *R/show.gtypes.R
d6441f9f8c25a1fbd1ee6d2d1d291034 *R/simGammaHaps.R
c37809e26569ad4b14e7be5cbab1a5fb *R/statChi2.R
f871ffcf1214e78435a6089272167cdc *R/statFis.R
8d4a7abb8243c0f92ecacca2df3f3d2d *R/statFst.R
096b5916d3c4833c724aed30e38e2100 *R/statGst.R
49f38984e42f588bfaeeec0c52f64b6f *R/statJostD.R
43c19f35eec7cd5d33545d7cd95936a9 *R/statPhist.R
f861c914fdff3bdd69ddf44622bd7105 *R/strataG-package.R
af2615e11a56e720f915b1341852f0ae *R/strataSplit.R
6da64e465b0eea3260a046080fda2185 *R/stratify.R
12729c04632a256bd89740bb7ad1e0ce *R/structure.R
77f291a7f95fc79eb5d8c6835765fd1a *R/structurePlot.R
7d1d55833867fdc1aa768a9c10a8c5cf *R/summarizeLoci.R
39d9902758c89b1f7188dd3ce504ccc7 *R/summarizeSeqs.R
963b67ba8162177f86797912521f743e *R/summary.gtypes.R
cb9a92438742f74e4e20997041bfc0f0 *R/sysdata.rda
206807a2c0df7e2f8a727b8d4bb49f63 *R/tajimasD.R
f6b2b8df19cdb72f297a94fb6d1f567d *R/theta.R
14be3e2661aac949e5c13da2c306ddf8 *R/trimNs.R
86187828e95013d552b4276a14fbd727 *R/validIupacCodes.R
893b52edb7306b3efb084f21dc38e142 *R/variableSites.R
bb40bad4e59795e9a2c0550595509fa6 *R/wrightFst.R
46dd69269ce5a12ab1966c2affbff819 *R/write.gtypes.R
80d3b3276439b88255cee04eff1e0cbd *R/write.nexus.snapp.R
a9ab74c3525e59e3ccd673408db1d317 *README.md
14cbfa51cd6a53f13ec2efecd20a47ef *build/vignette.rds
2665b0dad83bbc83f3ab5862516582ea *data/bowhead.snp.position.rda
eda94674fa43de5bf2079c442c65fd6e *data/bowhead.snps.rda
5955dd76350f7ef89940eb29711a9223 *data/dloop.g.rda
60560e65089fce6b714c3e8558c3aa3d *data/dolph.haps.rda
60ef22db45b7d9f4a1656d49e9e76e54 *data/dolph.msats.rda
cd1501dcbbf7b949d55d42f6f86bab78 *data/dolph.seqs.rda
0d0241aeecc5b19fc1a3d2e03c3f785d *data/dolph.strata.rda
cb1c350754725764ccd50df535c98fd0 *data/msats.g.rda
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8e6b8ff3197c4d19e0182fe469be37c5 *inst/doc/population.structure.html
e820d9d235cb4945fd2be41d78e059a8 *inst/doc/qaqc.R
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98fe583df717edf6fd6c62ed42f467c5 *inst/doc/summaries.html
b0f94e9f15ac66cb1d02bb0b67c724f0 *man/LDgenepop.Rd
333e85b96f630e7df6d395f5fc9a8ed3 *man/TiTvRatio.Rd
649f2eaed3ddac5945a51af2462f71ef *man/alleleFreqFormat.Rd
d19da20c2cf2aa62336e37594f922122 *man/alleleFreqs.Rd
7049da5776301628966735be1e75e2cf *man/alleleSplit.Rd
3c8168b3d3590a0ceffba7784a7947c7 *man/allelicRichness.Rd
cb4b8daedbf1871e23b6d021b828a439 *man/arlequin.Rd
66ad08faa82fb9656c08f5d1f79a52cb *man/as.matrix-gtypes-method.Rd
43cdfe52fcc08e0f57fc4f125a228c8f *man/as.multidna.Rd
8378b4381ac505050764b561923219ae *man/baseFreqs.Rd
583ce641b28360dd679e5154b8bdb505 *man/bowhead.snp.position.Rd
b4660575e76778d497db48fd1af60ed2 *man/bowhead.snps.Rd
2fd5ed225eca5c3a4a104337928b88a7 *man/clumpp.Rd
8e506a7bff5a78b25fa6816c5a6aee21 *man/createConsensus.Rd
307556802ca075a163128b0771647279 *man/df2gtypes.Rd
49a0b3f81ee4d7035b71b24a1a2d61a0 *man/dloop.g.Rd
ce8097ea53fab1b9feb0c9de6c69272f *man/dolph.haps.Rd
01433e7ea5282d856f91bba47e87ce7b *man/dolph.msats.Rd
1a2bf4e3647b43ede5483ccc11f4aa34 *man/dolph.seqs.Rd
17d0e31f4e466f9608a859f9c53e3467 *man/dolph.strata.Rd
342bcf05352cd734b72b6d9c85e6dbb5 *man/dupGenotypes.Rd
8913ee9282ec304a80dc8beea8a2f32c *man/evanno.Rd
0e291bc0644e0bb901f1f5ab2d410ffb *man/exptdNumAlleles.Rd
e871f3f898bb55ec286b663b0842a8bb *man/fasta.Rd
690d27e6b13e378d6b7f7c0521a5f12f *man/fastsimcoal.Rd
cfcba2428575db8db8fb3b25e9ab3ed6 *man/fastsimcoal.input.Rd
6fd0c0ce73954e68ba8fad8354894ecb *man/fixedDifferences.Rd
4cab5e62b21e601499db436ef6f4551a *man/fixedSites.Rd
edfe107d01128c68657d747cc0d88786 *man/freq2GenData.Rd
41a8d58a2e8b6196b6e948b0a0a3db9e *man/fstToNm.Rd
c279a01ac3d2c6d6da455f86578de6fa *man/fusFs.Rd
6d9cfb043cf1711fcdec8dbf3a5bdc53 *man/gelato.Rd
e6e15e194e8096d2de2561b30f943e7d *man/genepop.Rd
06ba44ec1883370b21ad45bdf35b40fd *man/gtypes-class.Rd
681efca8ee447f43a9f073947643d529 *man/gtypes.accessors.Rd
29855a25b00d9df84bfca708227ca431 *man/gtypes2df.Rd
ed121076360231996ffb01a86885054d *man/gtypes2genind.Rd
987335db2419f353374f0f956effec8e *man/gtypes2loci.Rd
2d02de852a7f5617f4d5a9de2333296f *man/haplotypeLikelihoods.Rd
6da2448bd5daf62be8483a973eb30d5f *man/heterozygosity.Rd
16fb724e53839b268bd85aa0d0944832 *man/hweTest.Rd
fece060d3503aadd398a530ab9f4a2d5 *man/idRows.Rd
d67e8b5edf1b13ef3fa40e478ec427ac *man/initialize-gtypes-method.Rd
c863a98fff42cbaccf9bd0f8b83c2b2d *man/iupacCode.Rd
e14bc5af90815c3c914452344bfc8a9b *man/jackHWE.Rd
7866a82e580271df4759c23040f4e43d *man/jmodeltest.Rd
2b0c9b0b2762b0d19bb3e976acc190ab *man/labelHaplotypes.Rd
19b4ce42005faa53232edbece5aa2417 *man/lowFreqSubs.Rd
28598417344380816e2a0b4bd686ce6c *man/mRatio.Rd
c92b16b9168c922c00e0aabe2e265adf *man/mafft.Rd
2c5d3b64c54c97a2dcd00f5bafcdc7ad *man/mega.Rd
53212bbfd5c47a1b4c469816b2899702 *man/mostDistantSequences.Rd
bb26a1b857d7a3b611045d23253a3b9d *man/mostRepresentativeSequences.Rd
cd9b31b3a997edd02f68418142c02b5e *man/msats.g.Rd
1351d703b9fc4d6fc9d28d23a071ec86 *man/neiDa.Rd
18e68cae832cbd1a555bb30b2cce3620 *man/nucleotideDivergence.Rd
c1ca4977752e1aa5c84e04ddf3545010 *man/nucleotideDiversity.Rd
b95d942cdaa04de7221ef04cc2a1c8ec *man/numAlleles.Rd
ae0088544af3bbdb98f9138328a52288 *man/numGensEq.Rd
9816208c85cf3e360a8a1a6478028e5c *man/numMissing.Rd
78ae8f664be80bc69c28152892951ce5 *man/parseLocusNames.Rd
35ddb509fad0cc71cf538e0dfbc91e83 *man/permuteStrata.Rd
f5293249fb20da53258be7c3c2dda4bf *man/phase.Rd
519087de01d1341e0a4afda91cc6781f *man/popStructStat.Rd
c3b7ea8679fd9bdfb6de962b2c70f86c *man/popStructTest.Rd
bc56d4e1091c6bab7d7d1a7070597522 *man/privateAlleles.Rd
d7739b4d9c9fffa316f3adcb8445b2bc *man/propUniqueAlleles.Rd
e0594433a74dc496186e7fa543a1d5f0 *man/qaqc.Rd
e8d8eda5fc7e85233f5984f47a20a353 *man/readGenData.Rd
1bafc12f5e0a607eb0c71df9aa3e5793 *man/removeSequences.Rd
cc7b1031c43af3e6218ebdecb55b5176 *man/sequence2gtypes.Rd
a79dbcb9c3f6fe598a32ba198f8a11b6 *man/sharedLoci.Rd
eacb3c882027684cb3ab4f31c51e09ab *man/show-gtypes-method.Rd
2701af6c6fe16dfc481edab7921f4eb3 *man/simGammaHaps.Rd
c042dc0dd2169fb7c166e8e6d451b3cc *man/strataG-package.Rd
09f880d2489e20a2230356bbcef6bf4c *man/strataSplit.Rd
b9a11626db967b93b23271ceca129456 *man/stratify.Rd
0d941b38ae1cc953e9e6678b4f4aa83f *man/structure.Rd
d105dd2b52cb5356d4c378267b3581a4 *man/structurePlot.Rd
195598bbb69faa8630ec15ae542d191a *man/summarizeLoci.Rd
0e96229f8fc975ce6db564a9f35b2017 *man/summarizeSeqs.Rd
a469998097db66773dd89d1e0edacb75 *man/summary-gtypes-method.Rd
558b4ce69b52736a7856f0ce8c2f45f2 *man/tajimasD.Rd
31c24afb9d1cdf26089b64c7e1f63ba2 *man/theta.Rd
c04540c50c123e9b65ab6aa5b4853507 *man/trimNs.Rd
d346f795f983b158e32c10bbc673701c *man/validIupacCodes.Rd
531dfc00a017b0e933c3c65b8aa7008c *man/variableSites.Rd
0b9d996ec65aee273d3280b218ba7246 *man/wrightFst.Rd
664e6b72bbbfc3f077d4d77f8dbe3eb6 *man/write.gtypes.Rd
5d5dc1cbe576e60b819dcc708b4fb364 *man/write.nexus.snapp.Rd
58c87ef87e5d2a02929a7e02d6635e0f *src/Hstats_C.cpp
09c7f5cc0fd9049005b47a4bfb24c43e *src/RcppExports.cpp
036740c2194677d2aaf1154951172239 *src/misc.funcs.cpp
eb38ebb9e35ea513d2cbe9fe9878efee *src/statChi2_C.cpp
a8f1c6243b35d3f72797a8187d11bde9 *src/statFis_C.cpp
0dc13a991411bd8185b2315b17f131f9 *src/statFst_C.cpp
5e14044d18b8abc3c4b976ec7de28f00 *src/statGst_C.cpp
0d0e20b02fd1e702cf7f96953a0df6f5 *src/statJostD_C.cpp
07c8a4f7d627fa2de78ca6ec5a672623 *src/statPhist_C.cpp
5e283e0d3204bfc24bd978416503318f *vignettes/external.programs.Rmd
a6f23cc6dc499e49019ab81d89f201c9 *vignettes/gtypes.Rmd
97473d04d663d5fa1a93a44eafec3642 *vignettes/population.structure.Rmd
e07b0b883e6b97f4b570695c6fe4e4b9 *vignettes/qaqc.Rmd
e6c86c4ed5b846c357000cf19ac5be38 *vignettes/sequences.Rmd
790b29f7698c7ff967cf8a3eb1fdc983 *vignettes/summaries.Rmd
