Package: strataG
Title: Summaries and Population Structure Analyses of Genetic Data
Description: A toolkit for analyzing stratified population genetic data.
Version: 1.0
License: GNU General Public License
Authors@R: c(
  EA = person("Eric", "Archer", email = "eric.archer@noaa.gov", role = c("aut", "cre")),
  PA = person("Paula", "Adams", email = "peadams@crimson.ua.edu", role = c("aut")),
  BS = person("Brita", "Schneiders", email = "britaschneiders@u.northwestern.edu", role = c("aut")))
BugReports: https://github.com/EricArcher/strataG/issues
Depends: R (>= 3.2.0), apex, adegenet
Suggests: knitr
Imports: ape, copula, ggplot2, graphics, Hmisc, methods, pegas,
        RColorBrewer, Rcpp, reshape2, stats, swfscMisc, utils
Collate: strataG-package.R gtypes.accessors.R gtypes.class.R
        initialize.gtypes.R internals.R alleleFreqFormat.R
        alleleFreqs.R alleleSplit.R allelicRichness.R arlequin.R
        as.matrix.gtypes.R as.multidna.R baseFreqs.R clumpp.R
        createConsensus.R dupGenotypes.R evanno.R expectedNumAlleles.R
        fasta.R fastsimcoal.input.R fastsimcoal.R fixedDifferences.R
        fixedSites.R freq2GenData.R fstToNm.R fusFs.R gelato.R
        genepop.R haplotypeLikelihoods.R heterozygosity.R Hstats.R
        hweTest.R idRows.R iupacCode.R jackHWE.R jmodeltest.R
        labelHaplotypes.R LDgenepop.R lowFreqSubs.R mRatio.R mafft.R
        mega.R mostDistantSequences.R mostRepresentativeSequences.R
        neiDa.R nucleotideDivergence.R nucleotideDiversity.R
        numAlleles.R numGensEq.R numMissing.R parseLocusNames.R
        permuteStrata.R phase.R popStructStat.R popStructTest.R
        privateAlleles.R propUniqueAlleles.R qaqc.R RcppExports.R
        readGenData.R removeSequences.R sharedLoci.R show.gtypes.R
        simGammaHaps.R statChi2.R statFis.R statFst.R statGst.R
        statJostD.R statPhist.R strataSplit.R stratify.R structure.R
        structurePlot.R summarizeLoci.R summarizeSeqs.R
        summary.gtypes.R tajimasD.R theta.R TiTvRatio.R trimNs.R
        validIupacCodes.R variableSites.R wrightFst.R write.gtypes.R
        write.nexus.snapp.R gtypes2df.R gtypes2genind.R gtypes2loci.R
        df2gtypes.R sequence2gtypes.R
LazyData: true
VignetteBuilder: knitr
LinkingTo: Rcpp
RoxygenNote: 5.0.1
NeedsCompilation: yes
Packaged: 2016-04-03 04:11:44 UTC; eric.archer
Author: Eric Archer [aut, cre],
  Paula Adams [aut],
  Brita Schneiders [aut]
Maintainer: Eric Archer <eric.archer@noaa.gov>
Repository: CRAN
Date/Publication: 2016-04-03 17:29:43
