78083d1d5f68d0c378fd8da9fcc27bf5 *DESCRIPTION
ade294284a7a69fdc3eb6c1facc32411 *NAMESPACE
f971e736d73d4ac714bcc299b68af53a *NEWS.md
8a113081688e5428e5787b8fa1cde700 *R/EMMA.R
17dbb07604ccd3451f6c9c55d2424207 *R/GWASHelp.R
8d225fb0fa33feb18707e96bfba2370e *R/RcppExports.R
fec13fd54ad1032d9d5979f486cb6146 *R/chkFuncs.R
eba70cc4c543cfab267bc7e9729c9953 *R/codeMarkers.R
624524fb4b0fcd8a448934449496ecd0 *R/createGData.R
d3b6545da7acbb36258e81acd61828ba *R/createGWAS.R
b0fe2d06318d94ffb2570b528cedc4a3 *R/data.R
b51fb343d0691f6cd8da1b43cdad023d *R/fastGLS.R
f8605c978525fd089703b1bf691228a8 *R/kinship.R
8e4a60e2c28b10204e00764134f03898 *R/manhattanPlot.R
cc3785b40424fbafd33910f5831e3c43 *R/qqPlot.R
71553cb372f103e2c01717cc9b3e0f82 *R/qtlPlot.R
adbf97b7b9bdcdf12a3daf58549ec323 *R/runSingleTraitGwas.R
0875c7b5743f5fa6a401a2f92e9ca266 *R/statgenGWAS.R
62a26bd9c5621be66d4cc464202f21b3 *R/sysdata.rda
f8098db55559f81dd6140b88c7d60f15 *R/utils.R
5692e3a4c30c1979ae6cbde404a84b42 *R/zzz.R
f471b0b28839052eb38599537afb0f9c *README.md
9fcaae5ce36c93cbbc4f32c58adf9029 *build/vignette.rds
6eeeb1e94b312355adcab7f36696cc0f *cleanup
0564ab2914cabb8d95531fbd7f1d6f1c *configure
53714e57f09fe68dc81bd8ef36ad2f7b *configure.ac
b272aa32364573adf05a8f412105e310 *data/datalist
64e9b54253a2472db98881bfeaf1aca0 *data/dropsMap.rda
24a1ce114496bb20f88282c6848f9a56 *data/dropsMarkers.rda
c17bdc97cc678428e7da689aa912a26a *data/dropsPheno.rda
201766383e7dd3cfe8b667642a99f4f5 *inst/doc/GWAS.R
fe4804f44a0cb25b265021550322a9ad *inst/doc/GWAS.Rmd
1bd531d14bc3e60626567ecae24476b3 *inst/doc/GWAS.html
9eb5f003b27c7cd79f717bd30b7db5ea *inst/extdata/testData.RData
ea98b902fe469c5a6b6e1a28fb08e3d6 *inst/java/beagle.jar
32c157f8b3aba2d3d1419d3d295a4fbd *inst/tinytest/test_GWAS.R
f862a1e79159241beb012fb15352e4be *inst/tinytest/test_STG.R
189e20c3daeb5486898c9d989a02bf87 *inst/tinytest/test_STGHelper.R
7bf58a82e482e30448c30faa3f3825e6 *inst/tinytest/test_STGoptions.R
b842765d0b6cb05379de1b29a533987e *inst/tinytest/test_chkFuncs.R
59d3d40d727ff66c921b14d7b829a92d *inst/tinytest/test_codeMarkers.R
d6c0bd9a7da0a2062a284964a4c75fd1 *inst/tinytest/test_gData.R
03d85dd7a22284ad6f4f17f584b3957a *inst/tinytest/test_kinship.R
f96139834ace04ca020784f94027bebc *inst/tinytest/test_plots.R
b448b0b49d7b0c938ba02514961828bd *inst/tinytest/test_utils.R
62a26bd9c5621be66d4cc464202f21b3 *inst/tinytest/testdata.rda
6f14213ffbe8b3d364d8304157ce2b4c *java/README
e54797997ca3e396e00a35b66d20035f *man/codeMarkers.Rd
cdd25e8c16c96f0dcfe75297c036594d *man/dropsData.Rd
316ac508aed8c6f1730a4aa180f86fb7 *man/gData.Rd
d44d0d0b64a4b720b2ce407d65fded5b *man/kinship.Rd
86c151d3e8e174b34aefd31721928ba3 *man/plot.GWAS.Rd
bf5fcf8e44854d61b3cb8965b0a7ea72 *man/runSingleTraitGwas.Rd
c2aa481dca43e4565c98cd5b65c5e9b5 *man/statgenGWAS-package.Rd
3f5aa95a2de2f9a21a5fb0aff36a2a46 *man/summary.GWAS.Rd
5cd203372a3b7e10855d9d893d9affe8 *man/summary.gData.Rd
9984a9660f1bfdbb1437242cca94781d *src/EMMA.cpp
9a5a72195d039bd8de376f2dfd780e23 *src/Makevars.in
61059660eb073d93e00e8ee054237071 *src/Makevars.win
7151929a95d62fcb8ad25566721f1ca7 *src/RcppExports.cpp
8230bea2a40eb150c44b5d4da288c83b *src/fastGLS.cpp
c40eccd054e54491978a0a4dfcc5b5d2 *src/getThr.cpp
dca120fb5d1c68c557fbd57ebd7f021c *src/getThr.h
69cb6afc57a670c0468fde0dbb80b42d *src/kinship.cpp
94943cff5669015525cecaf1b43fe195 *src/utils.cpp
74d10307362652a2ed9c8580bbc3db38 *tests/tinytest.R
fe4804f44a0cb25b265021550322a9ad *vignettes/GWAS.Rmd
ea3200008c26f71714a3c7403dee71d1 *vignettes/bibliography.bib
