89d487d0a1b7a7fe8e7b44b1129a50a7 *DESCRIPTION
d46785c84f23a581f43d7097c8803f9c *NAMESPACE
32c21e408ebfcd9ff22d814e113a5f20 *R/FHatCovariances.R
7cb71ea749e13f059eb26e126b9b2459 *R/GibbsCovariances.R
d8269293339e83a773fd183565613708 *R/ISPHelpers.R
354e2262c681f0a1f8571276980bba3c *R/MarkovChains.R
e375235083a25a9c1bd00074c587f378 *R/ag.test.R
48fb02f04871aa419fca2bf472641e47 *R/agct.test.R
627c9ff070e1ea45abf5ad9f69198291 *R/auxtests.R
ddbacf79b9a390f923b3e15c6b51558c *R/chargaff.gibbs.test.R
4fc548df186d2915545252198c3ad3a8 *R/chargaff0.test.R
4a8d619be9443786c1036c4cfabbff66 *R/chargaff1.test.R
dfd2c386e1e48c7142600c95e91d1620 *R/chargaff2.test.R
4a6bf9cb0516a99cf638f449edcccc21 *R/complement.R
8e4e0bed50ba93319e0a58aa62f02ef7 *R/counting.R
e4fad11d1b2f3b00ba499bc56a58816e *R/diid.test.R
ebb9c805c31f8764786b03368ef28006 *R/disambiguate.R
73ee013a615064caee78ecba28f1f57e *R/hooks.R
0560a70eef0e6eb4f3b3668f83b9c840 *R/markov.test.R
2337761cdc68b8de6fd23215a3b16101 *R/oligoCorr.R
33234f4302d90065b495b011fd869633 *R/print.R
8f9b79f452308517a12e0c6778f4b879 *R/profile.R
4d0764c8e7c83bc4af548bc5a874613e *R/randmat.R
2eb5e0f7107a75bd483187ff1366bcfb *R/reverseComplement.R
bc6d679be537b91d5a08b4623109fb91 *R/sysdata.rda
f867fa121741a81b1bbd55b876341b96 *cleanup
1d09990adde1bb3e6253986f85786445 *configure
2896764dbdf68080e513e7cd8af08879 *configure.ac
2f60de2e27c93ae134d2a18a74a1f1cf *data/datalist
33b5382c144e8cb24065038bae33d6f4 *data/nanoarchaeum.rda
39e231aed824a0acbf4311c41d21cf9a *data/pieris.rda
29ea38b5ed186a4dbc7494ec86cf3295 *man/ag.test.Rd
2411477019a170ffb0b8a4190b1989c1 *man/agct.test.Rd
dc7ce6b5b8df0fef359ddcdaea781f3e *man/array2vector.Rd
bfcc2da5c499eeacea4da84257037aed *man/chargaff.gibbs.test.Rd
12265349a5290fed77d513dcbafae6e9 *man/chargaff0.test.Rd
9e9f2cd88d1e047a5409c8e19835605c *man/chargaff1.test.Rd
c1186c29d31e00552caf85fd34fd8cee *man/chargaff2.test.Rd
0508d0e91f1040b491a3d8f75e2a2fd4 *man/chisq.unif.test.Rd
39d702754a06c337d38154081d13a007 *man/complement.Rd
5ce53f50d360254626142dd10450d621 *man/cylinder.counts.Rd
66f61bfbaf42c7a431b47d003861d98b *man/diffsign.test.Rd
dc8765dfac4d9ca005997376428c832d *man/diid.disturbance.Rd
672a3fc4a5cbcbf23be542c6241b035c *man/diid.test.Rd
69fbad67c4b15a93360332f6a694bdd3 *man/disambiguate.Rd
c0666e9c269ffd151ae0d37939716367 *man/estimateMarkovChain.Rd
4cf88333e3261bdd7d72d4dd5ade9799 *man/ks.unif.test.Rd
a0ab3aa1e04d9deaa08ee8b19aff4e29 *man/lb.test.Rd
5709ed9c66bbaf06ec24fcb25dc0917d *man/markov.disturbance.Rd
89b5c665b2688f294516175abd84af4d *man/markov.test.Rd
24e893622006dc328838fc073b445988 *man/nanoarchaeum.Rd
546de28df5fe1ae0d7a56a833d62552d *man/oligoProfile.Rd
b5681c41b41485e6268c5abb1705b4b0 *man/pair.counts.Rd
9a442c318f2a894d4094298d1c02d774 *man/pieris.Rd
3e6251e04c78c01525cd44efc5eb30d6 *man/quadruple.counts.Rd
87301bf33ed9cc68eae44dd330e6dca4 *man/rank.test.Rd
6c972010a0e8b64fec2b007ce9c290ad *man/rcspr2mat.Rd
e1ec311d34cbf2263addd7a0ea9fffcd *man/reverseComplement.Rd
414e24b02e4f06c3bf7a637725562937 *man/rstochmat.Rd
818639c2c74269efb43e7b40935bc96d *man/rstochvec.Rd
2669f878cc7107af3b474c75c40806fc *man/simulateMarkovChain.Rd
dff2dcbb04c4fdf98f72abf88b9f04cd *man/spgs-package.Rd
9a882feed349690b77c891d2545391de *man/triple.counts.Rd
9e0bd5f00f4a27a836bd184519642719 *man/turningpoint.test.Rd
b63ebbd340419a9652d421aebbefea16 *src/Makevars.in
de26716acb4c10f913bd90c457f88776 *src/Makevars.win
cd3229ead640d247f4a8c2ddfc66a717 *src/sharedef.h
cc84a57580ea77e6718792a47ad564d2 *src/spgs.c
84d1e0a0bef8b4d1ddde3932e56c7a4e *src/spgs.h
95003eba2e8bfa6c613eb5ad6e8a52e6 *src/uint64.h
eca03e500ba0b94347a6d465353118c2 *tests/countingTest.R
dfb85d062f97e1ca673079bc0d8a12c6 *tests/countingTest.Rout.savefile
9a900203e38c8167d52e586dedb41b05 *tests/profileTest.R
730d0ca105b205c135705ca4657a6de4 *tests/profileTest.Rout.savefile
