ae254b094fdb1963507b5d06536fe9a7 *DESCRIPTION
43fede49d7909e409e4b8cd4b517112b *NAMESPACE
32c21e408ebfcd9ff22d814e113a5f20 *R/FHatCovariances.R
7cb71ea749e13f059eb26e126b9b2459 *R/GibbsCovariances.R
d8269293339e83a773fd183565613708 *R/ISPHelpers.R
ddf8b381debd5a5428953b5493f4ccc7 *R/MarkovChains.R
e375235083a25a9c1bd00074c587f378 *R/ag.test.R
9b53dd9f75be38e84dd4d2a9e5957f9a *R/agct.test.R
8903d3e82c60ba953ba82ad2c4a5e757 *R/auxtests.R
cf91a4daa110c11902cdcb472fec1ad0 *R/chargaff.gibbs.test.R
4fc548df186d2915545252198c3ad3a8 *R/chargaff0.test.R
37da10736d6ff975020e86eccda1d1f4 *R/chargaff1.test.R
809bb5c7177cbf099fb6c77300645f41 *R/chargaff2.test.R
4a6bf9cb0516a99cf638f449edcccc21 *R/complement.R
ed66c1a6b7899fbc9918ab102e58866f *R/counting.R
e4fad11d1b2f3b00ba499bc56a58816e *R/diid.test.R
ebb9c805c31f8764786b03368ef28006 *R/disambiguate.R
73ee013a615064caee78ecba28f1f57e *R/hooks.R
0560a70eef0e6eb4f3b3668f83b9c840 *R/markov.test.R
2337761cdc68b8de6fd23215a3b16101 *R/oligoCorr.R
33234f4302d90065b495b011fd869633 *R/print.R
8f9b79f452308517a12e0c6778f4b879 *R/profile.R
4d0764c8e7c83bc4af548bc5a874613e *R/randmat.R
2eb5e0f7107a75bd483187ff1366bcfb *R/reverseComplement.R
bc6d679be537b91d5a08b4623109fb91 *R/sysdata.rda
f7876d4cc9f860f7e2fdbc09c170ef28 *build/partial.rdb
2ac532068c08bd745abd9252277243c3 *cleanup
b581d7947f5410d40c8a67aa4810ed3e *configure
8bd4ae346b2b54083acdd2c689a0841a *configure.ac
2f60de2e27c93ae134d2a18a74a1f1cf *data/datalist
33b5382c144e8cb24065038bae33d6f4 *data/nanoarchaeum.rda
39e231aed824a0acbf4311c41d21cf9a *data/pieris.rda
372389cb29c0ab8f79ff5c35e0aa6ff7 *inst/CITATION
efcc1a76b7f5b038bd8cd9f544706c75 *inst/NEWS.Rd
1a66f20805bfa32e7820013f2f57bd32 *man/ag.test.Rd
f01308f416fc94c031858354dc39dfd4 *man/agct.test.Rd
1e92da25fa3bc392e478932261a5bb21 *man/array2vector.Rd
55b19d6838a3f2c0774ea2ec41a2ca1b *man/chargaff.gibbs.test.Rd
f1bce3aa0c4da7ede8ec60e50c21bd06 *man/chargaff0.test.Rd
eafdf562e343b3e881e09c5cd4276000 *man/chargaff1.test.Rd
82035db68fc68cf62e421e7d9f0fc5e8 *man/chargaff2.test.Rd
42c021d2959bc0275b28d0f55fb954e5 *man/chisq.unif.test.Rd
2103ef97838fba47ce59bfd997c8daeb *man/complement.Rd
606a285e4d2bdcc382f540aa996b1bae *man/cylinder.counts.Rd
abc701124ee59fa48e9046c343f626a8 *man/diffsign.test.Rd
b605231e052b7b5aa38ade3e1076b8e3 *man/diid.disturbance.Rd
768b7dca497d433a2dbb781347deb044 *man/diid.test.Rd
eb07930d74ad75cd57e532e315be99f9 *man/disambiguate.Rd
8437e1bdce02914f633e372c8bf92873 *man/estimateMarkovChain.Rd
7a84aa0061564d89c6e7d26b7534234a *man/ks.unif.test.Rd
4354c019d579224b9da6baf009603dbf *man/lb.test.Rd
2456c7851a53741b4a038a562deb1510 *man/markov.disturbance.Rd
d642464e44ca8b5af4384477330e4368 *man/markov.test.Rd
0e6cd3cfbd954da7bd3405a952abd4cb *man/nanoarchaeum.Rd
546de28df5fe1ae0d7a56a833d62552d *man/oligoProfile.Rd
b4a40d18c05d3c632f6e297d36437457 *man/pair.counts.Rd
88366e8ade6f3097da082f8776667631 *man/pieris.Rd
021fddda76ca5042ae43134f20d4380a *man/quadruple.counts.Rd
87301bf33ed9cc68eae44dd330e6dca4 *man/rank.test.Rd
67fa3e70a223a816843178417582679a *man/rcspr2mat.Rd
581e3b9e4fe94197dc9e7583254f62a0 *man/reverseComplement.Rd
8c246c0511ac6c30bc269323fea21835 *man/rstochmat.Rd
80725c32f33b8fa5365f444e87f54300 *man/rstochvec.Rd
b500da3fd07e75386af55ebab82d1122 *man/simulateMarkovChain.Rd
f77d8988cf91c5249fb472a3f9fd38b8 *man/spgs-package.Rd
c75373bd5e4f9e06a4e736f49464fa71 *man/triple.counts.Rd
bbb1a0370b765246c6905162987fd01f *man/turningpoint.test.Rd
078008f643abace203aca4e9c9173dde *src/Makevars.in
efc26eccd6eb0cae082f3c9e2027082c *src/Makevars.win
4f322d898867f5054dd17a1259d0d84a *src/spgs-win.def
2860990f93b2c6254a4105dd5998ad40 *src/spgs.c
5b525eab7392109d21062cc3a75c5748 *src/spgs.h
95003eba2e8bfa6c613eb5ad6e8a52e6 *src/uint64.h
eca03e500ba0b94347a6d465353118c2 *tests/countingTest.R
dfb85d062f97e1ca673079bc0d8a12c6 *tests/countingTest.Rout.savefile
9a900203e38c8167d52e586dedb41b05 *tests/profileTest.R
730d0ca105b205c135705ca4657a6de4 *tests/profileTest.Rout.savefile
