9a120937b389109dc26a5963791aeb6e *DESCRIPTION
6376fe6e77b9c49dbb5d6d26434834ed *NAMESPACE
d2ff218f55f61084bf070ee2b5341928 *NEWS
dd981a8bc19bea5e91c256f75ea8b5c9 *R/AAstat.R
b6298280b9a08d024fea7f8b8ab28aa5 *R/ClassSeq.R
a4e5a95c06fcbee618591790f1c090d3 *R/GC.R
633531e5d119f908e2ed61c2063515d9 *R/PI.R
053a0187d0fb50f067967b45e2cbbcac *R/R_socket.R
d0fddeea0d82c2ce6be501fb845e68db *R/acnucclose.R
b899f1793668edaf00f2fc34bf3f8156 *R/acnucopen.R
6c231aebdc9d78beed8b128ca9497b3a *R/al2bp.R
f1c181a43cd515afc40912c23d57b48f *R/allistranks.R
e8ca816b2688ccdff894fe7484a5219b *R/amb.R
dcb9fdf6787b486e715eb32fcad782f9 *R/as.alignment.R
23dd9489492a03efabb30f8b942db543 *R/as.matrix.alignment.R
ef4ecfea9f3ba3e7fa6d4d22d3fc5c87 *R/autosocket.R
79270da6013f8c0da557d49df4c6fb93 *R/baselineabif.R
5703b2a2d40aff5cdb4fe98e03b1806c *R/bma.R
e8d88ddfefb2671a94f95c53e8c22c57 *R/cai.R
5f15ab5f63f71b752039ca1ced27a28b *R/choosebank.R
812ffd4010c7035837d2fd0d4db290f5 *R/circle.R
d8fab11dbb02bd793828704fb6903c51 *R/clfcd.R
b25f52a33ccb2f6f66fcb30e1e74680e *R/clientid.R
00bc719de0ccf65560a86ec794b760fe *R/closebank.R
f6f6dc5c585d71ee9e664db3d9e9453a *R/col2alpha.R
4e447d6e1a9e89af067cd78b19f5ad2a *R/comp.R
26ff4107c8fc92f96020fc8551688aa9 *R/consensus.R
70903c3ea1da6bcb6d2b0b77960f86a7 *R/count.R
3d5c97c10129de81da8b0b7c8006bdf3 *R/countfreelists.R
e354a7785d3f515d4311ddf75b54fc71 *R/countsubseqs.R
170a8077be5e66cd08ca1fba10209d24 *R/db.growth.R
cebf98192d79835008576417ae0022f1 *R/dia.bactgensize.R
614fe8e9845c0364257f54f29c5533c4 *R/dist.alignment.R
3dc6f329eea0d8db614bfb6ded99c056 *R/dotPlot.R
0cb50c3cea7907d9245cfef278bb9da0 *R/dotchart.uco.R
e7c8d78234ac7a398766943c2b179d91 *R/draw.oriloc.R
c5d3818fb836288a75c41ce6dd7c19e0 *R/draw.rearranged.oriloc.R
4f7b1e44bac0700d4d313876c1f19639 *R/draw.recstat.R
3a8ea0fc00e75ece7d1937ab8c7eba6d *R/extract.breakpoints.R
b89dfd6ad6584d989cedc6960af214ec *R/extractseqs.R
7cbf5e8324af34371d3917496bc23dfa *R/fastacc.R
e74c8ba0da1fb405e080065261728f9c *R/gb2fasta.R
15b4b2400b4e169fec31abb5e88869b9 *R/gbk2g2.R
5c25127bfa87a9c0ae5cc0303e2d5760 *R/gbk2g2.euk.R
97394927a67bc9051c6c2d897e2b4c8c *R/getAnnot.R
06ee37a0f5cdfc6ac972635c90a4ca2d *R/getFrag.R
6f45dd26e77c33f1a68b30394df40537 *R/getKeyword.R
414a50f37334fdf5c20e32de06a44c62 *R/getLength.R
bd6ff768d092ad6573c2b719c7d2399d *R/getLocation.R
c4b6fc3ccb3bcdec62bdebced9263660 *R/getName.R
0a36d73d9d155c5b7a3704ab73bee883 *R/getSequence.R
5f3525ffdeb401675378531efa06094b *R/getTrans.R
b582f5a822b09825f9f4dabc2e220cc4 *R/getType.R
77de234689104f105b66bdaf4ebbd886 *R/getlistrank.R
31a6e8b2f9594596d677b57f3906b677 *R/getliststate.R
e2af7c88e0e7c42cbb6e6208aa6364d8 *R/gfrag.R
1b9650fd96f5cbce29b1b79015ad99c5 *R/ghelp.R
ade42b1d2a6034de880e6676cf1f5da5 *R/isenum.R
8834450f10c4d06cc047966749dda721 *R/kaks.R
106b5a8d04534e8441081bdadc23959f *R/knowndbs.R
3ea277d7f032f1d31004cda14e46fbab *R/lseqinr.R
6e4f1e677e5d870e8c5b3bf57fa25b91 *R/modifylist.R
a3da681f32a58026a42e57d6a5baa03c *R/move.R
ed4500d5696fcea0e4230f0655e7a716 *R/oriloc.R
94847d1d09e2ea265da9f736f732487a *R/parser.socket.R
c0fd92be7137f64874e66a0d3e3f713d *R/peakabif.R
daadbfebc84beef3d1e3fa1b511d1d82 *R/permutation.R
501e668ee6fcdaa032058914567191d4 *R/plot.SeqAcnucWeb.R
2869a2eb6a2c8a3dcf8d70cdb136d6c4 *R/plotPanels.R
8d5d7797b913d7eb039c5e2a125ff5ec *R/plotabif.R
edc4cc62d55ced70244d2db9bb71b815 *R/plotladder.R
ae47cf06593fc89cb8a105dfb69b6e93 *R/pmw.R
6e740c9d557d3f42fd31ce5ba3067a9c *R/prepgetannots.R
0e735cb30f6e370e4e494ad9dcba14d1 *R/prettyseq.R
cb9f8a17e0bdafa1fe7b8a4584eb8ab0 *R/query.r
126d5ade572e95511b2b66b7189807d9 *R/quitacnuc.R
5c829cc5536f04c051d686cf1b553859 *R/read.abif.R
e1c3bbe3d0f04d247e508d0e059ce04a *R/read.alignment.R
87e8e655fba756c20ceda9e3e2d516ae *R/read.fasta.R
8a46bbfddc96af2244eb21d7fa7157b6 *R/readBins.R
7fa1d45bb89c1229cd494c007ce94d5f *R/readPanels.R
5d684c3f0beda26fa6e1d9bfd063680d *R/readfirstrec.R
12b4af8afe3c4af7b65070201db7082c *R/readsmj.R
76ecc72faa60145380275581474f98dc *R/rearranged.oriloc.R
98f98cdd0cb535cce91bad01c47192d0 *R/recstat.R
e27d133de947ce3880ed4e300c676a84 *R/residuecount.R
ca1c94e97783b4a68a30df6ab1cad560 *R/reverse.align.R
6b928f22960b6446a41f5b305555979c *R/rho.R
8f025ccd0924af255f041a917f7a3787 *R/rot13.R
9322afd6c1c4397be5f96d68263869cd *R/s2n.R
be01cbe2fc2ee4b08079bc7b8b396e01 *R/savelist.R
848e8f8bd67e29e39e1e46a026d003b4 *R/setlistname.R
29e473837b15cb94cb62419eab7a93e5 *R/splitseq.R
b081eb607b9782f99653e50cfb1e9d3f *R/stresc.R
b06cb8115a0f2f568cbc8946908a52ee *R/stutterabif.R
46ac2ee30965434e3687b259691a69cd *R/swap.R
77ea763a58167e3de49c1ad98babcc3c *R/synonymous.R
478b66c88728d9d18b394b4868b00f58 *R/tablecode.R
0134ec6749f84bc8aa7596850f784316 *R/test.co.recstat.R
ab86b9a3f2568f102986b6fb93a545bc *R/test.li.recstat.R
a3350838cdb114e256e2441990c0dfa1 *R/translate.R
db37533bde4cb23943363ec1649c395b *R/trimSpace.R
8e180cdee361f0de8b4854c0428eb166 *R/uco.R
3c550b2b0e6b7f012c5884ec97a5f2b3 *R/util.R
5c6a726318b034002ec8478005d0ec54 *R/where.is.this.acc.R
4e4e196dab3926727e78e6af44616ebd *R/words.R
a56eb0ff10c2eb36431885fa78e0fdb8 *R/words.pos.R
204830bfeeef59878373d10b947e6fc2 *R/write.fasta.R
6daeda4870b681a9def5e87b0c2a692c *R/zscore.R
ea124a494ad7922985532ad3b308e4d5 *build/partial.rdb
7eb1b6b2f3c88a21d3157b3dce5784e7 *data/AnoukResult.RData
ae8963d06a0fe337784a58597eb9047f *data/ECH.RData
9af400f0e09bb79784948c8fe9d24cc9 *data/EXP.RData
9423f34956c043ade38000db6b4a076e *data/JLO.RData
a5062809357a2fe2539c70140d930245 *data/SEQINR.UTIL.RData
0ca889f87158450afa4f5e0f6d75793a *data/aacost.RData
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4e579ffcefb1b2129ff613cf7e8f6159 *data/caitab.RData
e0b65f83fc4e226dd9dd2138d688ff80 *data/chargaff.RData
279b7a18ac9fd828ee1d97da7d624c0c *data/clustal.RData
fb8b1f04480e80f0ff6285e4fd2f4b57 *data/datalist
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73a62fb8d13e65867b848578df50454f *data/ec999.RData
dfb7ca24a9281c0141d9d809913a2552 *data/fasta.RData
8bf3a6dc556fe8c334ce28e995b226f2 *data/gcO2.rda
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815f2c344ad8a36d912eb800184940d6 *data/gs500liz.RData
15993e2f48a694ec715d2213fbf1d3c0 *data/identifiler.RData
6b54c05ce241f77d641b44cebf1d5ba9 *data/kaksTorture.RData
7c4a61f5f188a839865d9a685d53e91b *data/m16j.RData
39a39f632dc193627a8b7cdc20cea37c *data/mase.RData
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3d3374aee19870cc6d37d26d070854dd *data/prochlo.RData
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a5062809357a2fe2539c70140d930245 *data/sysdata.rda
5aabe7fba90bd06a7a8fcc9fe9e0aa31 *data/toyaa.RData
5ae4ba427222943c2ba95ef2f0e7d38e *data/toycodon.RData
9cb7067db766c62ff9f45016487fe033 *data/waterabs.RData
df797f2cdf697b330d68ac8194db7a53 *inst/CITATION
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831e4bb52c0b2ab78a9246dca7e67d58 *inst/abif/2_0000206138_C01_005.fsa
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4e0288d7d9d76672c7ff8ff0d05fe0ad *inst/abif/AmpFLSTR_Panels_v1.txt
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118cf8e86dbab633734283bb8968aebd *inst/abif/Prototype_PowerPlex_EP01_Bins.txt
480c7bcaed36937e62d611aaea8845e7 *inst/abif/Prototype_PowerPlex_EP01_Pa.txt
115afc50e7118a18a18bb7078eb22e53 *inst/abif/samplefsa2ps.fsa
a162dc1c3b4461c33c1644320e84cea5 *inst/sequences/Anouk.fasta
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ca11c1c6cecbb254b394ee24bff10d17 *inst/sequences/ame1.gbk
ce707593c6e9f43ac3f77f2276b2fc73 *inst/sequences/bb.acc
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8eb44c1f8c1e1b2d40bab5106ec657c3 *inst/sequences/bb.mne
cd5b7b52fe1bd7a49107cfe7a4fa1311 *inst/sequences/bb.sp
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d14166d4b9592dedfb53124ea81795a7 *inst/sequences/ct.predict
d0ff0477e562d8aa3c0979a4a33a2226 *inst/sequences/ecolicgpe5.fasta
6dc7e60dac18296f9e1d719f39f03b84 *inst/sequences/gopher.fasta
1d5bd50d5ff345e08cb37a8689303e0c *inst/sequences/gopher.names
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1b714fae98378e5142d7ec658127ef36 *inst/sequences/legacy.fasta
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717a230459ee63b4bf752db0af85ee7d *inst/sequences/someORF.fsa
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b8cf915491772d56bfd779c64156c424 *inst/sequences/test.mase
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98fa02321f2d444eb742e45c61ab0ea5 *man/AnoukResult.Rd
131d0036ec0206695bf5d2fc76e23237 *man/ECH.Rd
b477890899d95267de5249664a241350 *man/EXP.Rd
ff186cc91476b4025d94e308d888c6b8 *man/GC.Rd
aae70d4e27e7d89ecff697cb32b688bd *man/JLO.Rd
1f5d21bea7068773e4be2d5f53222b4f *man/SEQINR.UTIL.Rd
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77e0cd2af40b5f07142a00165561113b *man/SeqFrag.Rd
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9b66028b42d96e7429140aa57655d886 *man/getAnnot.Rd
f997c1167e5903376b1f15789c1fa5de *man/getFrag.Rd
54545ba9f510e782a006733a3e3e8fb3 *man/getKeyword.Rd
c6528d6372e7ac069263526d82617c5e *man/getLength.Rd
36cd87460ede81e62b98a146498421a0 *man/getLocation.Rd
08984b8a287f0d4a8463dafd47d0a336 *man/getName.Rd
079d7a8f6263a46bbed6c8393c96fc47 *man/getSequence.Rd
acf870bf953f1e3ed7e18f09cd619a06 *man/getTrans.Rd
6c69abe312462e20291bf121926d4529 *man/getType.Rd
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