9aecfe27d84d0b136a0e868784b8620e *DESCRIPTION
6376fe6e77b9c49dbb5d6d26434834ed *NAMESPACE
dd981a8bc19bea5e91c256f75ea8b5c9 *R/AAstat.R
7175d6708d717dca65176df83a41f9bd *R/ClassSeq.R
1e91dc3520dc9fd00e6e78da768c4b2e *R/GC.R
633531e5d119f908e2ed61c2063515d9 *R/PI.R
053a0187d0fb50f067967b45e2cbbcac *R/R_socket.R
d0fddeea0d82c2ce6be501fb845e68db *R/acnucclose.R
b899f1793668edaf00f2fc34bf3f8156 *R/acnucopen.R
6c231aebdc9d78beed8b128ca9497b3a *R/al2bp.R
f1c181a43cd515afc40912c23d57b48f *R/allistranks.R
e8ca816b2688ccdff894fe7484a5219b *R/amb.R
dcb9fdf6787b486e715eb32fcad782f9 *R/as.alignment.R
23dd9489492a03efabb30f8b942db543 *R/as.matrix.alignment.R
ef4ecfea9f3ba3e7fa6d4d22d3fc5c87 *R/autosocket.R
79270da6013f8c0da557d49df4c6fb93 *R/baselineabif.R
5703b2a2d40aff5cdb4fe98e03b1806c *R/bma.R
e8d88ddfefb2671a94f95c53e8c22c57 *R/cai.R
5f15ab5f63f71b752039ca1ced27a28b *R/choosebank.R
812ffd4010c7035837d2fd0d4db290f5 *R/circle.R
d8fab11dbb02bd793828704fb6903c51 *R/clfcd.R
b25f52a33ccb2f6f66fcb30e1e74680e *R/clientid.R
00bc719de0ccf65560a86ec794b760fe *R/closebank.R
f6f6dc5c585d71ee9e664db3d9e9453a *R/col2alpha.R
a54741d7bafe66fe670b789236cc22fa *R/comp.R
26ff4107c8fc92f96020fc8551688aa9 *R/consensus.R
70903c3ea1da6bcb6d2b0b77960f86a7 *R/count.R
3d5c97c10129de81da8b0b7c8006bdf3 *R/countfreelists.R
e354a7785d3f515d4311ddf75b54fc71 *R/countsubseqs.R
170a8077be5e66cd08ca1fba10209d24 *R/db.growth.R
1394355049f1bb135f481a50508994d5 *R/dia.bactgensize.R
d47075fe840da6f000af83ece511af2c *R/dist.alignment.R
3dc6f329eea0d8db614bfb6ded99c056 *R/dotPlot.R
35bf83b40232e876bb2e619749056162 *R/dotchart.uco.R
e7c8d78234ac7a398766943c2b179d91 *R/draw.oriloc.R
c5d3818fb836288a75c41ce6dd7c19e0 *R/draw.rearranged.oriloc.R
4f7b1e44bac0700d4d313876c1f19639 *R/draw.recstat.R
c83bc7ce2217e6f215b18376e72b650f *R/extract.breakpoints.R
b89dfd6ad6584d989cedc6960af214ec *R/extractseqs.R
7cbf5e8324af34371d3917496bc23dfa *R/fastacc.R
e74c8ba0da1fb405e080065261728f9c *R/gb2fasta.R
2d5372f6f01f90ea00be0599d686cfbc *R/gbk2g2.R
5c25127bfa87a9c0ae5cc0303e2d5760 *R/gbk2g2.euk.R
56a71d800186da36f5817641353d1bb3 *R/get.ncbi.R
97394927a67bc9051c6c2d897e2b4c8c *R/getAnnot.R
06ee37a0f5cdfc6ac972635c90a4ca2d *R/getFrag.R
6f45dd26e77c33f1a68b30394df40537 *R/getKeyword.R
414a50f37334fdf5c20e32de06a44c62 *R/getLength.R
bd6ff768d092ad6573c2b719c7d2399d *R/getLocation.R
c4b6fc3ccb3bcdec62bdebced9263660 *R/getName.R
0a36d73d9d155c5b7a3704ab73bee883 *R/getSequence.R
5f3525ffdeb401675378531efa06094b *R/getTrans.R
b582f5a822b09825f9f4dabc2e220cc4 *R/getType.R
77de234689104f105b66bdaf4ebbd886 *R/getlistrank.R
31a6e8b2f9594596d677b57f3906b677 *R/getliststate.R
e2af7c88e0e7c42cbb6e6208aa6364d8 *R/gfrag.R
1b9650fd96f5cbce29b1b79015ad99c5 *R/ghelp.R
ade42b1d2a6034de880e6676cf1f5da5 *R/isenum.R
22d9950d657c07d38f245a908f615150 *R/kaks.R
106b5a8d04534e8441081bdadc23959f *R/knowndbs.R
3ea277d7f032f1d31004cda14e46fbab *R/lseqinr.R
6e4f1e677e5d870e8c5b3bf57fa25b91 *R/modifylist.R
a3da681f32a58026a42e57d6a5baa03c *R/move.R
ed4500d5696fcea0e4230f0655e7a716 *R/oriloc.R
94847d1d09e2ea265da9f736f732487a *R/parser.socket.R
c0fd92be7137f64874e66a0d3e3f713d *R/peakabif.R
daadbfebc84beef3d1e3fa1b511d1d82 *R/permutation.R
501e668ee6fcdaa032058914567191d4 *R/plot.SeqAcnucWeb.R
2869a2eb6a2c8a3dcf8d70cdb136d6c4 *R/plotPanels.R
8d5d7797b913d7eb039c5e2a125ff5ec *R/plotabif.R
edc4cc62d55ced70244d2db9bb71b815 *R/plotladder.R
ae47cf06593fc89cb8a105dfb69b6e93 *R/pmw.R
6e740c9d557d3f42fd31ce5ba3067a9c *R/prepgetannots.R
0e735cb30f6e370e4e494ad9dcba14d1 *R/prettyseq.R
cb9f8a17e0bdafa1fe7b8a4584eb8ab0 *R/query.r
126d5ade572e95511b2b66b7189807d9 *R/quitacnuc.R
5c829cc5536f04c051d686cf1b553859 *R/read.abif.R
568dca4f1a96d5619854a9e30ee60f58 *R/read.alignment.R
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8a46bbfddc96af2244eb21d7fa7157b6 *R/readBins.R
7fa1d45bb89c1229cd494c007ce94d5f *R/readPanels.R
5d684c3f0beda26fa6e1d9bfd063680d *R/readfirstrec.R
12b4af8afe3c4af7b65070201db7082c *R/readsmj.R
76ecc72faa60145380275581474f98dc *R/rearranged.oriloc.R
98f98cdd0cb535cce91bad01c47192d0 *R/recstat.R
e27d133de947ce3880ed4e300c676a84 *R/residuecount.R
ca1c94e97783b4a68a30df6ab1cad560 *R/reverse.align.R
6b928f22960b6446a41f5b305555979c *R/rho.R
8f025ccd0924af255f041a917f7a3787 *R/rot13.R
50393c64f02c89723db803c22366329f *R/s2n.R
be01cbe2fc2ee4b08079bc7b8b396e01 *R/savelist.R
848e8f8bd67e29e39e1e46a026d003b4 *R/setlistname.R
29e473837b15cb94cb62419eab7a93e5 *R/splitseq.R
b081eb607b9782f99653e50cfb1e9d3f *R/stresc.R
b06cb8115a0f2f568cbc8946908a52ee *R/stutterabif.R
46ac2ee30965434e3687b259691a69cd *R/swap.R
77ea763a58167e3de49c1ad98babcc3c *R/synonymous.R
478b66c88728d9d18b394b4868b00f58 *R/tablecode.R
0134ec6749f84bc8aa7596850f784316 *R/test.co.recstat.R
ab86b9a3f2568f102986b6fb93a545bc *R/test.li.recstat.R
a3350838cdb114e256e2441990c0dfa1 *R/translate.R
db37533bde4cb23943363ec1649c395b *R/trimSpace.R
8e180cdee361f0de8b4854c0428eb166 *R/uco.R
3c550b2b0e6b7f012c5884ec97a5f2b3 *R/util.R
5c6a726318b034002ec8478005d0ec54 *R/where.is.this.acc.R
4e4e196dab3926727e78e6af44616ebd *R/words.R
a56eb0ff10c2eb36431885fa78e0fdb8 *R/words.pos.R
204830bfeeef59878373d10b947e6fc2 *R/write.fasta.R
6daeda4870b681a9def5e87b0c2a692c *R/zscore.R
829e66257cbf8d6e8b0bfccf4821a868 *data/AnoukResult.RData
832cac15b90637b035719a3b18141612 *data/ECH.RData
4b5b6e829b6ed07ec8a1fe55baf20f47 *data/EXP.RData
dd575f197f38709df0d3ef1e1a343a04 *data/JLO.RData
1b78e002df52468bd0e24c1890d235f6 *data/SEQINR.UTIL.RData
5f896b010753aa00cd1e19b25cc96de0 *data/aacost.RData
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6b93d30b41afb921733b7bb25fe03c50 *data/fasta.RData
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ba10edde24d59ebf2edb2c9e738196db *data/gcT.rda
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bb7b941bed12bcfb9b440d7ecf40d5fd *data/m16j.RData
26e0271e5bbf2591e02893aab3c1bb1a *data/mase.RData
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345eb2170ca78e4aeeff379df1b3f199 *data/toyaa.RData
b30eed3c897f03a3c24239b7ff79df6b *data/toycodon.RData
dddf4d15a6215d0b9a60cec705386733 *data/waterabs.RData
df797f2cdf697b330d68ac8194db7a53 *inst/CITATION
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9f64398f12a862adadc4ddea9374e5bf *inst/abif/NGM_Pa.txt
48281c9d741c32bfddc8ae63aefc8df0 *inst/abif/Promega_Bins_v1.txt
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118cf8e86dbab633734283bb8968aebd *inst/abif/Prototype_PowerPlex_EP01_Bins.txt
480c7bcaed36937e62d611aaea8845e7 *inst/abif/Prototype_PowerPlex_EP01_Pa.txt
115afc50e7118a18a18bb7078eb22e53 *inst/abif/samplefsa2ps.fsa
a162dc1c3b4461c33c1644320e84cea5 *inst/sequences/Anouk.fasta
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8eb44c1f8c1e1b2d40bab5106ec657c3 *inst/sequences/bb.mne
cd5b7b52fe1bd7a49107cfe7a4fa1311 *inst/sequences/bb.sp
48ba932397d95293cf4b497773e83723 *inst/sequences/bordetella.fasta
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6dc7e60dac18296f9e1d719f39f03b84 *inst/sequences/gopher.fasta
1d5bd50d5ff345e08cb37a8689303e0c *inst/sequences/gopher.names
cf31afbaea651a30e8f2b530483830bb *inst/sequences/hannah.txt
e03266d6ed9efa1dad9755a88e024565 *inst/sequences/humanMito.fasta
c56d8223a10995c70a6f965e46a06b44 *inst/sequences/input.dat
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1b714fae98378e5142d7ec658127ef36 *inst/sequences/legacy.fasta
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5bc8c88f5db8076d8d036c4ca91e1562 *man/AAstat.Rd
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8d735c4f859717374f61bd4b8094060c *man/ECH.Rd
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4e32511953712c0ad3a6cecc9f79d434 *man/SEQINR.UTIL.Rd
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fdda8a20d94b93b4c9dd587763e8ea96 *man/SeqFastaAA.Rd
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44ea7c5018d8cb72a5c9221244d4ed47 *man/amb.Rd
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0066bc893874ff25f429c9fc607555ec *man/bma.Rd
1720c015d702002313d2404bf34dd746 *man/c2s.Rd
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dc73697f22c67c0762ceae6cc04f4f1f *man/gbk2g2.Rd
3013a472ea7f9eb0e83e58eccd8915b2 *man/gbk2g2.euk.Rd
ca71f60ee685df319cd6d10ac4050436 *man/gcO2.Rd
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43e1ba4a463958d3fc30dd834cf84f51 *man/get.db.growth.Rd
97a1bc320a34ee6919ae9d5a537d8ed2 *man/get.ncbi.Rd
9b66028b42d96e7429140aa57655d886 *man/getAnnot.Rd
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54545ba9f510e782a006733a3e3e8fb3 *man/getKeyword.Rd
c6528d6372e7ac069263526d82617c5e *man/getLength.Rd
36cd87460ede81e62b98a146498421a0 *man/getLocation.Rd
08984b8a287f0d4a8463dafd47d0a336 *man/getName.Rd
079d7a8f6263a46bbed6c8393c96fc47 *man/getSequence.Rd
8e0538cbbb212da6f846fce672664651 *man/getTrans.Rd
6c69abe312462e20291bf121926d4529 *man/getType.Rd
dc9361185c4cc068c74f243ae3085fb5 *man/getlistrank.Rd
a36f61d22d9b9f7157c32a08a598f5e0 *man/getliststate.Rd
2be6d73cdd7da150f01c304ca9799d5f *man/gfrag.Rd
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