Copyright: The code in src/pcre is Copyright (c) 1997-2010 University
        of Cambridge.  All other code is Copyright (c) 2002-2010
        University of California, Cornell University.
Package: rphast
Maintainer: Melissa Hubisz <mjhubisz@cornell.edu>
License: BSD_3_clause + file LICENSE
Title: R interface to PHAST software for comparative genomics
Author: Melissa Hubisz, Katherine Pollard, and Adam Siepel
Description: RPHAST is an R interface to the PHAST package
    (Phylogenetic Analysis with Space/Time Models).  It can be used for
    many types of analysis in comparative and evolutionary genomics,
    such as estimating models of evolution from sequence data, scoring
    alignments for conservation or acceleration, and predicting
    elements based on conservation or custom phylogenetic hidden Markov
    models.  It can also perform many basic operations on multiple
    sequence alignments and phylogenetic trees.
Version: 1.5
URL: http://compgen.bscb.cornell.edu/rphast
Date: 2011-02-08
Depends: stats
Suggests: ape, seqLogo
Collate: 'bgc.R' 'checkArgs.R' 'feat.R' 'hmm.R' 'listOfLists.R' 'msa.R'
        'optim.R' 'phastCons.R' 'phyloFit.R' 'phyloP.R' 'plot.R'
        'rphast.R' 'treeModel.R' 'trees.R' 'zzz.R'
Packaged: 2013-12-13 15:51:10 UTC; melissa
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-12-13 18:07:52
