a2696ff301b7fa2164f966c3819e84f1 *DESCRIPTION
9b37b56816999aa6b18503334803abdf *LICENSE
d99231661a9147d7eb96e2e0e40c6b1f *NAMESPACE
77143b52bafcaa903c6c41f487407acc *NEWS.md
e945dae267923303e6fa4ca1a5ed12db *R/calc_change_in_ml.R
c5f73dd64614d0b8163e6531731e1e8f *R/calc_log_ml.R
44f5533d37450a06ba1647af888dce44 *R/hierBAPS.R
d4f0a15c017abf9ba700ed77b440cf56 *R/join_units_2.R
2dc30671e367642ee949a2a245fda15a *R/load_fasta.R
d95b2d46cc7d40aa7481033e1bf52edc *R/log_stirling2.R
61ab9f9ff0d97e4a54d3365b5206ea31 *R/model_search_parallel.R
ccd4170afaab194aead384d829e2b594 *R/move_units_1.R
748e4c6680ab79d15009282e2094a945 *R/plot_sub_cluster.R
57ddc9ce2e0297397cb9d72af7d8ce03 *R/preproc_alignment.R
3498cbc622fe41d9123cbb5d79de203d *R/reallocate_units_4.R
a0bc456c6c458892945b8bebd4c34777 *R/save_lml_logs.R
ff13375b4d2f217bf1c8bfa47c0ffce9 *R/split_clusters_3.R
8e744d0ca128e7580baa607da0d24ba5 *README.md
d800de94360ed0afd9c7b411d9d0e308 *build/vignette.rds
c88e01e4a6dc58e62b5c42585392b353 *inst/CITATION
49b614c0c00ee77b2da372ba6e349787 *inst/doc/introduction.R
4bd26e7e9acb1726682191101eae3d71 *inst/doc/introduction.Rmd
057bdc705c6091f9922853107df84bd5 *inst/doc/introduction.html
04731d4ed4ed9c7537020ebea5f324c3 *inst/extdata/seqs.fa
173ffdde45b98157f1c33111f9a6c91d *inst/extdata/seqs.fa.treefile
0037061569879ab09563b0a84275d5d2 *inst/extdata/small_seqs.fa
9abed74ffa3fe4c60043bc4969369ba6 *inst/vignette-supp/unnamed-chunk-13-1.png
9abed74ffa3fe4c60043bc4969369ba6 *inst/vignette-supp/unnamed-chunk-14-1.png
9abed74ffa3fe4c60043bc4969369ba6 *inst/vignette-supp/unnamed-chunk-15-1.png
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fa16ca5cc3868b0b481ef9bf159a81bd *inst/vignette-supp/unnamed-chunk-17-1.png
4e1747d012705ed7117ed7cb6f0f4b65 *man/calc_change_in_ml.Rd
c38d70b15162b37fa8c04215775addee *man/calc_log_ml.Rd
c3acc874844519a48ac408944ee84fb5 *man/hierBAPS.Rd
34bef8cf45173f845b19d84e9e378e48 *man/join_units_2.Rd
e88efec7191f3f1d314cfe399e382cca *man/load_fasta.Rd
04dcdc16acc3fbc02b07fc1aebde4aa4 *man/log_stirling2.Rd
639e54343190d2d56b8c55771dd5b946 *man/model_search_parallel.Rd
412ef4ae8d957d680e9111ce44e38b14 *man/move_units_1.Rd
6501d4c2dc39110211a21d8dfadd3d3c *man/plot_sub_cluster.Rd
9fa930703ba94c525963845bd5134c95 *man/preproc_alignment.Rd
3a98aa05b512d7b842da27e9b3ae6d02 *man/reallocate_units_4.Rd
ef3dd8df240c8f7dd6c601f185d8c3eb *man/save_lml_logs.Rd
de62c1bb558c12898699af882f686ff7 *man/split_clusters_3.Rd
284599c9d118d91ad35d1c99c3873721 *vignettes/bibliography.bib
4bd26e7e9acb1726682191101eae3d71 *vignettes/introduction.Rmd
