### Running: /home/kyoshida/miniconda3/lib/R/bin/exec/R --slave --no-restore --file=02_generate_sas_macro_calls.R 
> 
> cat("
+ ###
+ ### Prepare environment
+ ################################################################################\n")

###
### Prepare environment
################################################################################
> 
> ## Record start time
> start_time <- Sys.time()
> cat("### Started ", as.character(start_time), "\n")
### Started  2020-04-01 23:48:01 
> 
> 
> ## Load packages
> library(tidyverse)
Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang
Registered S3 method overwritten by 'rvest':
  method            from
  read_xml.response xml2
── Attaching packages ─────────────────────────────────────────────────────────── tidyverse 1.2.1 ──
✔ ggplot2 3.1.1       ✔ purrr   0.3.3  
✔ tibble  2.1.1       ✔ dplyr   0.8.0.1
✔ tidyr   0.8.3       ✔ stringr 1.4.0  
✔ readr   1.3.1       ✔ forcats 0.4.0  
── Conflicts ────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag()    masks stats::lag()
> 
> 
> cat("
+ ###
+ ### Generate all relevant patterns of %mediation() calls
+ ################################################################################\n")

###
### Generate all relevant patterns of %mediation() calls
################################################################################
> 
> source("./02_generate_sas_macro_calls_helpers.R")
> 
> macro_args <- generate_sas_macro_args()
> 
> macro_args %>%
+     print(n = Inf)
# A tibble: 80 x 19
   mreg  yreg  interaction casecontrol ncvar avar  mvar  yvar  eventvar cens  cvar  output c_cond
   <chr> <chr> <chr>       <chr>       <dbl> <chr> <chr> <chr> <chr>    <chr> <chr> <chr>  <chr> 
 1 line… line… false       false           0 trt   bili  alk_… ""       cens  ""    full   ""    
 2 line… line… false       false           3 trt   bili  alk_… ""       cens  age … full   50 1 2
 3 line… line… true        false           0 trt   bili  alk_… ""       cens  ""    full   ""    
 4 line… line… true        false           3 trt   bili  alk_… ""       cens  age … full   50 1 2
 5 line… logi… false       false           0 trt   bili  spid… ""       cens  ""    full   ""    
 6 line… logi… false       false           3 trt   bili  spid… ""       cens  age … full   50 1 2
 7 line… logi… false       true            0 trt   bili  spid… ""       cens  ""    full   ""    
 8 line… logi… false       true            3 trt   bili  spid… ""       cens  age … full   50 1 2
 9 line… logi… true        false           0 trt   bili  spid… ""       cens  ""    full   ""    
10 line… logi… true        false           3 trt   bili  spid… ""       cens  age … full   50 1 2
11 line… logi… true        true            0 trt   bili  spid… ""       cens  ""    full   ""    
12 line… logi… true        true            3 trt   bili  spid… ""       cens  age … full   50 1 2
13 line… logl… false       false           0 trt   bili  spid… ""       cens  ""    full   ""    
14 line… logl… false       false           3 trt   bili  spid… ""       cens  age … full   50 1 2
15 line… logl… false       true            0 trt   bili  spid… ""       cens  ""    full   ""    
16 line… logl… false       true            3 trt   bili  spid… ""       cens  age … full   50 1 2
17 line… logl… true        false           0 trt   bili  spid… ""       cens  ""    full   ""    
18 line… logl… true        false           3 trt   bili  spid… ""       cens  age … full   50 1 2
19 line… logl… true        true            0 trt   bili  spid… ""       cens  ""    full   ""    
20 line… logl… true        true            3 trt   bili  spid… ""       cens  age … full   50 1 2
21 line… negb… false       false           0 trt   bili  plat… ""       cens  ""    full   ""    
22 line… negb… false       false           3 trt   bili  plat… ""       cens  age … full   50 1 2
23 line… negb… true        false           0 trt   bili  plat… ""       cens  ""    full   ""    
24 line… negb… true        false           3 trt   bili  plat… ""       cens  age … full   50 1 2
25 line… pois… false       false           0 trt   bili  plat… ""       cens  ""    full   ""    
26 line… pois… false       false           3 trt   bili  plat… ""       cens  age … full   50 1 2
27 line… pois… true        false           0 trt   bili  plat… ""       cens  ""    full   ""    
28 line… pois… true        false           3 trt   bili  plat… ""       cens  age … full   50 1 2
29 line… surv… false       false           0 trt   bili  time  status   cens  ""    full   ""    
30 line… surv… false       false           3 trt   bili  time  status   cens  age … full   50 1 2
31 line… surv… true        false           0 trt   bili  time  status   cens  ""    full   ""    
32 line… surv… true        false           3 trt   bili  time  status   cens  age … full   50 1 2
33 line… surv… false       false           0 trt   bili  time  status   cens  ""    full   ""    
34 line… surv… false       false           3 trt   bili  time  status   cens  age … full   50 1 2
35 line… surv… true        false           0 trt   bili  time  status   cens  ""    full   ""    
36 line… surv… true        false           3 trt   bili  time  status   cens  age … full   50 1 2
37 line… surv… false       false           0 trt   bili  time  status   cens  ""    full   ""    
38 line… surv… false       false           3 trt   bili  time  status   cens  age … full   50 1 2
39 line… surv… true        false           0 trt   bili  time  status   cens  ""    full   ""    
40 line… surv… true        false           3 trt   bili  time  status   cens  age … full   50 1 2
41 logi… line… false       false           0 trt   bili… alk_… ""       cens  ""    full   ""    
42 logi… line… false       false           3 trt   bili… alk_… ""       cens  age … full   50 1 2
43 logi… line… true        false           0 trt   bili… alk_… ""       cens  ""    full   ""    
44 logi… line… true        false           3 trt   bili… alk_… ""       cens  age … full   50 1 2
45 logi… logi… false       false           0 trt   bili… spid… ""       cens  ""    full   ""    
46 logi… logi… false       false           3 trt   bili… spid… ""       cens  age … full   50 1 2
47 logi… logi… false       true            0 trt   bili… spid… ""       cens  ""    full   ""    
48 logi… logi… false       true            3 trt   bili… spid… ""       cens  age … full   50 1 2
49 logi… logi… true        false           0 trt   bili… spid… ""       cens  ""    full   ""    
50 logi… logi… true        false           3 trt   bili… spid… ""       cens  age … full   50 1 2
51 logi… logi… true        true            0 trt   bili… spid… ""       cens  ""    full   ""    
52 logi… logi… true        true            3 trt   bili… spid… ""       cens  age … full   50 1 2
53 logi… logl… false       false           0 trt   bili… spid… ""       cens  ""    full   ""    
54 logi… logl… false       false           3 trt   bili… spid… ""       cens  age … full   50 1 2
55 logi… logl… false       true            0 trt   bili… spid… ""       cens  ""    full   ""    
56 logi… logl… false       true            3 trt   bili… spid… ""       cens  age … full   50 1 2
57 logi… logl… true        false           0 trt   bili… spid… ""       cens  ""    full   ""    
58 logi… logl… true        false           3 trt   bili… spid… ""       cens  age … full   50 1 2
59 logi… logl… true        true            0 trt   bili… spid… ""       cens  ""    full   ""    
60 logi… logl… true        true            3 trt   bili… spid… ""       cens  age … full   50 1 2
61 logi… negb… false       false           0 trt   bili… plat… ""       cens  ""    full   ""    
62 logi… negb… false       false           3 trt   bili… plat… ""       cens  age … full   50 1 2
63 logi… negb… true        false           0 trt   bili… plat… ""       cens  ""    full   ""    
64 logi… negb… true        false           3 trt   bili… plat… ""       cens  age … full   50 1 2
65 logi… pois… false       false           0 trt   bili… plat… ""       cens  ""    full   ""    
66 logi… pois… false       false           3 trt   bili… plat… ""       cens  age … full   50 1 2
67 logi… pois… true        false           0 trt   bili… plat… ""       cens  ""    full   ""    
68 logi… pois… true        false           3 trt   bili… plat… ""       cens  age … full   50 1 2
69 logi… surv… false       false           0 trt   bili… time  status   cens  ""    full   ""    
70 logi… surv… false       false           3 trt   bili… time  status   cens  age … full   50 1 2
71 logi… surv… true        false           0 trt   bili… time  status   cens  ""    full   ""    
72 logi… surv… true        false           3 trt   bili… time  status   cens  age … full   50 1 2
73 logi… surv… false       false           0 trt   bili… time  status   cens  ""    full   ""    
74 logi… surv… false       false           3 trt   bili… time  status   cens  age … full   50 1 2
75 logi… surv… true        false           0 trt   bili… time  status   cens  ""    full   ""    
76 logi… surv… true        false           3 trt   bili… time  status   cens  age … full   50 1 2
77 logi… surv… false       false           0 trt   bili… time  status   cens  ""    full   ""    
78 logi… surv… false       false           3 trt   bili… time  status   cens  age … full   50 1 2
79 logi… surv… true        false           0 trt   bili… time  status   cens  ""    full   ""    
80 logi… surv… true        false           3 trt   bili… time  status   cens  age … full   50 1 2
# … with 6 more variables: a0 <chr>, a1 <chr>, m_cde <chr>, macro_call <chr>, sas_script <chr>,
#   filename <chr>
> 
> macro_args %>%
+     select(filename) %>%
+     print(n = Inf)
# A tibble: 80 x 1
   filename                                                      
   <chr>                                                         
 1 sas-mreg_linear_yreg_linear_int_f_caco_f_ncvar0.sas           
 2 sas-mreg_linear_yreg_linear_int_f_caco_f_ncvar3.sas           
 3 sas-mreg_linear_yreg_linear_int_t_caco_f_ncvar0.sas           
 4 sas-mreg_linear_yreg_linear_int_t_caco_f_ncvar3.sas           
 5 sas-mreg_linear_yreg_logistic_int_f_caco_f_ncvar0.sas         
 6 sas-mreg_linear_yreg_logistic_int_f_caco_f_ncvar3.sas         
 7 sas-mreg_linear_yreg_logistic_int_f_caco_t_ncvar0.sas         
 8 sas-mreg_linear_yreg_logistic_int_f_caco_t_ncvar3.sas         
 9 sas-mreg_linear_yreg_logistic_int_t_caco_f_ncvar0.sas         
10 sas-mreg_linear_yreg_logistic_int_t_caco_f_ncvar3.sas         
11 sas-mreg_linear_yreg_logistic_int_t_caco_t_ncvar0.sas         
12 sas-mreg_linear_yreg_logistic_int_t_caco_t_ncvar3.sas         
13 sas-mreg_linear_yreg_loglinear_int_f_caco_f_ncvar0.sas        
14 sas-mreg_linear_yreg_loglinear_int_f_caco_f_ncvar3.sas        
15 sas-mreg_linear_yreg_loglinear_int_f_caco_t_ncvar0.sas        
16 sas-mreg_linear_yreg_loglinear_int_f_caco_t_ncvar3.sas        
17 sas-mreg_linear_yreg_loglinear_int_t_caco_f_ncvar0.sas        
18 sas-mreg_linear_yreg_loglinear_int_t_caco_f_ncvar3.sas        
19 sas-mreg_linear_yreg_loglinear_int_t_caco_t_ncvar0.sas        
20 sas-mreg_linear_yreg_loglinear_int_t_caco_t_ncvar3.sas        
21 sas-mreg_linear_yreg_negbin_int_f_caco_f_ncvar0.sas           
22 sas-mreg_linear_yreg_negbin_int_f_caco_f_ncvar3.sas           
23 sas-mreg_linear_yreg_negbin_int_t_caco_f_ncvar0.sas           
24 sas-mreg_linear_yreg_negbin_int_t_caco_f_ncvar3.sas           
25 sas-mreg_linear_yreg_poisson_int_f_caco_f_ncvar0.sas          
26 sas-mreg_linear_yreg_poisson_int_f_caco_f_ncvar3.sas          
27 sas-mreg_linear_yreg_poisson_int_t_caco_f_ncvar0.sas          
28 sas-mreg_linear_yreg_poisson_int_t_caco_f_ncvar3.sas          
29 sas-mreg_linear_yreg_survAFT_exp_int_f_caco_f_ncvar0.sas      
30 sas-mreg_linear_yreg_survAFT_exp_int_f_caco_f_ncvar3.sas      
31 sas-mreg_linear_yreg_survAFT_exp_int_t_caco_f_ncvar0.sas      
32 sas-mreg_linear_yreg_survAFT_exp_int_t_caco_f_ncvar3.sas      
33 sas-mreg_linear_yreg_survAFT_weibull_int_f_caco_f_ncvar0.sas  
34 sas-mreg_linear_yreg_survAFT_weibull_int_f_caco_f_ncvar3.sas  
35 sas-mreg_linear_yreg_survAFT_weibull_int_t_caco_f_ncvar0.sas  
36 sas-mreg_linear_yreg_survAFT_weibull_int_t_caco_f_ncvar3.sas  
37 sas-mreg_linear_yreg_survCox_int_f_caco_f_ncvar0.sas          
38 sas-mreg_linear_yreg_survCox_int_f_caco_f_ncvar3.sas          
39 sas-mreg_linear_yreg_survCox_int_t_caco_f_ncvar0.sas          
40 sas-mreg_linear_yreg_survCox_int_t_caco_f_ncvar3.sas          
41 sas-mreg_logistic_yreg_linear_int_f_caco_f_ncvar0.sas         
42 sas-mreg_logistic_yreg_linear_int_f_caco_f_ncvar3.sas         
43 sas-mreg_logistic_yreg_linear_int_t_caco_f_ncvar0.sas         
44 sas-mreg_logistic_yreg_linear_int_t_caco_f_ncvar3.sas         
45 sas-mreg_logistic_yreg_logistic_int_f_caco_f_ncvar0.sas       
46 sas-mreg_logistic_yreg_logistic_int_f_caco_f_ncvar3.sas       
47 sas-mreg_logistic_yreg_logistic_int_f_caco_t_ncvar0.sas       
48 sas-mreg_logistic_yreg_logistic_int_f_caco_t_ncvar3.sas       
49 sas-mreg_logistic_yreg_logistic_int_t_caco_f_ncvar0.sas       
50 sas-mreg_logistic_yreg_logistic_int_t_caco_f_ncvar3.sas       
51 sas-mreg_logistic_yreg_logistic_int_t_caco_t_ncvar0.sas       
52 sas-mreg_logistic_yreg_logistic_int_t_caco_t_ncvar3.sas       
53 sas-mreg_logistic_yreg_loglinear_int_f_caco_f_ncvar0.sas      
54 sas-mreg_logistic_yreg_loglinear_int_f_caco_f_ncvar3.sas      
55 sas-mreg_logistic_yreg_loglinear_int_f_caco_t_ncvar0.sas      
56 sas-mreg_logistic_yreg_loglinear_int_f_caco_t_ncvar3.sas      
57 sas-mreg_logistic_yreg_loglinear_int_t_caco_f_ncvar0.sas      
58 sas-mreg_logistic_yreg_loglinear_int_t_caco_f_ncvar3.sas      
59 sas-mreg_logistic_yreg_loglinear_int_t_caco_t_ncvar0.sas      
60 sas-mreg_logistic_yreg_loglinear_int_t_caco_t_ncvar3.sas      
61 sas-mreg_logistic_yreg_negbin_int_f_caco_f_ncvar0.sas         
62 sas-mreg_logistic_yreg_negbin_int_f_caco_f_ncvar3.sas         
63 sas-mreg_logistic_yreg_negbin_int_t_caco_f_ncvar0.sas         
64 sas-mreg_logistic_yreg_negbin_int_t_caco_f_ncvar3.sas         
65 sas-mreg_logistic_yreg_poisson_int_f_caco_f_ncvar0.sas        
66 sas-mreg_logistic_yreg_poisson_int_f_caco_f_ncvar3.sas        
67 sas-mreg_logistic_yreg_poisson_int_t_caco_f_ncvar0.sas        
68 sas-mreg_logistic_yreg_poisson_int_t_caco_f_ncvar3.sas        
69 sas-mreg_logistic_yreg_survAFT_exp_int_f_caco_f_ncvar0.sas    
70 sas-mreg_logistic_yreg_survAFT_exp_int_f_caco_f_ncvar3.sas    
71 sas-mreg_logistic_yreg_survAFT_exp_int_t_caco_f_ncvar0.sas    
72 sas-mreg_logistic_yreg_survAFT_exp_int_t_caco_f_ncvar3.sas    
73 sas-mreg_logistic_yreg_survAFT_weibull_int_f_caco_f_ncvar0.sas
74 sas-mreg_logistic_yreg_survAFT_weibull_int_f_caco_f_ncvar3.sas
75 sas-mreg_logistic_yreg_survAFT_weibull_int_t_caco_f_ncvar0.sas
76 sas-mreg_logistic_yreg_survAFT_weibull_int_t_caco_f_ncvar3.sas
77 sas-mreg_logistic_yreg_survCox_int_f_caco_f_ncvar0.sas        
78 sas-mreg_logistic_yreg_survCox_int_f_caco_f_ncvar3.sas        
79 sas-mreg_logistic_yreg_survCox_int_t_caco_f_ncvar0.sas        
80 sas-mreg_logistic_yreg_survCox_int_t_caco_f_ncvar3.sas        
> 
> 
> cat("
+ ###
+ ### Write to sas scripts
+ ################################################################################\n")

###
### Write to sas scripts
################################################################################
> 
> junk <- macro_args %>%
+     mutate(junk = map2(sas_script, filename,
+                        function(sas_script, filename) {
+                            write_lines(x = sas_script, path = filename)
+                        }))
> 
> 
> ################################################################################
> cat("
+ ###
+ ### Record package versions etc
+ ################################################################################\n")

###
### Record package versions etc
################################################################################
> print(sessionInfo())
R version 3.6.1 (2019-07-05)
Platform: x86_64-conda_cos6-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server release 6.10 (Santiago)

Matrix products: default
BLAS/LAPACK: /home/kyoshida/miniconda3/lib/R/lib/libRblas.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8       
 [4] LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] forcats_0.4.0   stringr_1.4.0   dplyr_0.8.0.1   purrr_0.3.3     readr_1.3.1     tidyr_0.8.3    
[7] tibble_2.1.1    ggplot2_3.1.1   tidyverse_1.2.1

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.1       pillar_1.3.1     compiler_3.6.1   cellranger_1.1.0 plyr_1.8.4      
 [6] tools_3.6.1      jsonlite_1.6     lubridate_1.7.4  gtable_0.3.0     nlme_3.1-139    
[11] lattice_0.20-40  pkgconfig_2.0.2  rlang_0.4.5      cli_1.1.0        rstudioapi_0.10 
[16] haven_2.1.0      withr_2.1.2      xml2_1.2.0       httr_1.4.0       generics_0.0.2  
[21] hms_0.4.2        grid_3.6.1       tidyselect_0.2.5 glue_1.3.1       R6_2.4.0        
[26] fansi_0.4.0      readxl_1.3.1     modelr_0.1.4     magrittr_1.5     backports_1.1.4 
[31] scales_1.0.0     rvest_0.3.3      assertthat_0.2.1 colorspace_1.4-1 utf8_1.1.4      
[36] stringi_1.4.3    lazyeval_0.2.2   munsell_0.5.0    broom_0.5.2      crayon_1.3.4    
> ## Record execution time and multicore use
> end_time <- Sys.time()
> diff_time <- difftime(end_time, start_time, units = "auto")
> 
