afae52988f3201a4e8cb79422ff11609 *DESCRIPTION
2fdd8e70e8f2e16bf47919250887b735 *NAMESPACE
78e73d051ac1e7d12a76173ea4b88e29 *NEWS.md
0956caae83ad407a30cbd175f7d7f3e3 *R/RcppExports.R
d3d1a96c7434a89cb361c256533ec386 *R/accessors.r
963ed1dd9d14543f489bdedf25e4c73a *R/alpha.div.r
bce3b15a966f0b2694431eb2e3d38c00 *R/beta.div.r
9ed1719ed09a64f0b579b595550be8be *R/imports.r
bcf52b9956c6472ad89e8bb01965c087 *R/print.r
8fe32a06e18c925bf6ce23781f6be5ee *R/rarefy.r
bc6397ee37cfe7a300a228dcd423ebc6 *R/rbiom.r
07e181711b2904d3f7663f61a9383f2d *R/read.biom.r
1bb0b02ebd5e58e7cd4942ccf133196e *R/read.fasta.r
4e73c5fa77e55080b9edf6debd317254 *R/read.tree.r
7d176975888c5fe8407f9d4c47d52e16 *R/select.r
348562459462b4ec6c915b35082121be *R/subset.r
1d6d392ed706d703aae0050db16c59b2 *R/subtree.r
94065dcb24f61ae5279d56f0a4d71eba *R/taxa.rollup.r
29ba2daba5560bcd48b10ba182dfd008 *R/tips.r
7fe703759ed207ae89aef8dff5228640 *R/unifrac.r
9f50be60e411540b0f539e96c8aaee36 *R/write.biom.r
dc49c01e56442a8b968f253e43997ef0 *R/write.fasta.r
32a53a49cb5d2db853ce9fe7321a1347 *R/write.tree.r
438134cf12333fa760a79df3accb4cce *R/write.xlsx.r
6c539d6b511f39c51b01ae1cfcaa0dea *README.md
8543d71b90627222e07f5f9dd3272184 *inst/extdata/hmp50.bz2
06625984a778ef0f60349dfe92103f6c *inst/extdata/newick.tre
1edf7122a3db7c6300ea7579abac71cb *man/alpha.div.Rd
1f6fa87a3079d64798b728b048f02b6c *man/beta.div.Rd
9ae9662b88237de203a19edd281a12ad *man/counts.Rd
ff876f5e5ffca89125447ea0d6426b19 *man/info.Rd
23c42cad52511d6c0241200f11b7b8f2 *man/metadata.Rd
03cb51fd1e0ceb9978adb9fced3cf90e *man/nsamples.Rd
d0d5564cac819315849d66e98cdf8698 *man/ntaxa.Rd
da41ac80f4465e3d44510f28d7eb1ecf *man/phylogeny.Rd
0d9298355e26a3765dc8842a8d39d43b *man/pipe.Rd
de5e3b45a03d2c0ee786555e096f8a74 *man/print.Rd
88e5df1a4752b13373f2c9deed9d7108 *man/rarefy.Rd
939a7011a3de11db4dcb70ea5be864e4 *man/rbiom.Rd
2340bd78411b3b5d79ab3c10283f8c5a *man/read.biom.Rd
5ff8bb1044e7d6784faf45f233df1f59 *man/read.fasta.Rd
e36f02dbcbb6f5c3d262fafa5911e160 *man/read.tree.Rd
2363843fdee166a892d92c378b7f548b *man/sample.names.Rd
d589570509f864bea4cfa6a64ea6c0e3 *man/select.Rd
3b00cfcb88eb5c60843a53c676b99ab9 *man/sequences.Rd
377465d63039f3a47eb5206b50c79b4d *man/subset.Rd
0bbcbb2e984b3600494169794290d489 *man/subtree.Rd
dc877771c9eb3335cc109bb0ecc05d08 *man/taxa.names.Rd
5d0d2108ec8ec77befea1ba436041b4a *man/taxa.ranks.Rd
e3ebc87fb463e307355e34c91d11a84c *man/taxa.rollup.Rd
9e6f35f179dbe86530d4408303dbd907 *man/taxonomy.Rd
471ea685cf9d9384ec86194de40449c2 *man/tips.Rd
f3de60d1f549f75beeb6730da2658853 *man/unifrac.Rd
03392669b361f03868fd0d7bec7372e4 *man/write.biom.Rd
a7c460b1d0dbbef452c907455efd67f8 *man/write.fasta.Rd
d04d8e9c834045ca66ec7d3b27163aab *man/write.tree.Rd
6e77d77f657d7cfc2941e05a8be582de *man/write.xlsx.Rd
e3d3cb360fbfdb3c6974e14eb5f09870 *src/Makevars.win
dd85686c320eb8be17c5f14120d6b8ae *src/RcppExports.cpp
fe1423e163060a6d21a788ac90445a43 *src/par_beta_div.cpp
eda04109ce22191a433c9dda5e8bac27 *src/par_unifrac.cpp
f5558534ba1c15ede4e15928fcd1ddd9 *src/rcpp_alpha_div.cpp
0d72fe80e2a50db443e55ea628262fe4 *src/rcpp_rarefy.cpp
12d2ee0b309d3a5f2922b6c4620b9c75 *src/rcpp_treeIO.cpp
ded83a4fe4e4ef8984cebf87a998dfe8 *tests/testthat.R
5c2fa96f7e0a4df50586b14ef3f56e24 *tests/testthat/inputs/biom.rds
06625984a778ef0f60349dfe92103f6c *tests/testthat/inputs/newick.tre
a09cbb429dc6b8c0c5c168fc54480abe *tests/testthat/outputs/alpha.div.rds
e7912a973d03303cfb2d47871088d44d *tests/testthat/outputs/beta.div.rds
383116a8433b4f9a72995ad97727e232 *tests/testthat/outputs/rarefy.rds
5cc08c41e3cc707dffa13b56366d81c4 *tests/testthat/outputs/select_ex1.rds
61d0d1f3b0552d90281dfa2c71f2a2ec *tests/testthat/outputs/select_ex2.rds
ce0bc8d2d8d48ff1ad76531dcd76e688 *tests/testthat/outputs/select_ex3.rds
082d7b06c1cbbbafa9b34cc0df2b6fc9 *tests/testthat/outputs/subset_ex1.rds
dbcfde4fc3bc3ab664ca5b8c7ea4be96 *tests/testthat/outputs/subset_ex2.rds
f8bcb7afcd740c19d66b522885a77bc6 *tests/testthat/outputs/subset_ex3.rds
df2cf4bb44e1bc5cd31cb6def43d520b *tests/testthat/outputs/taxa.rollup.rds
5d45acfea2877b87e1008f9a07999e1c *tests/testthat/test_accessors.r
c3db101394fc1056656614d02330497b *tests/testthat/test_calculations.r
4b6d6e39874f738539a64a8e057a0d0d *tests/testthat/test_distance.r
1b0bea9183b114a7f82e9cadbcd24d79 *tests/testthat/test_file_io.r
f634421a290b2af5f1c852b1bffb3f17 *tests/testthat/test_subsetting.r
f2a3222cc72bee6970441ab61b70b666 *tests/testthat/test_tree.r
