c53a331fc840c2b923cadc7426b25e7e *DESCRIPTION
0ba1b7e291db107e0e67a3e98a43f050 *NAMESPACE
32465a77aff8df75e58ffa237111375b *R/RcppExports.R
92714acbaf8302a759f88d060a02738f *R/rags2ridges.R
6ef4709377fa6ed94c20fbbaf49b31d2 *R/rags2ridgesDepr.R
6e25f577efeae03b3f7262b41a6582ae *R/rags2ridgesFused.R
2b6a4ad70b4d55b0e2989e2d4ffb77fa *R/rags2ridgesMisc.R
6550a27021e870f7170e5330705a466b *R/rags2ridgesVariants.r
897132806849c352f3650d05474f6923 *README.md
418f69b45eb060fb5b2a0f9b1950b832 *data/ADdata.rda
b3f3712373aa861a5ff46fe5d7d18c3a *inst/CITATION
320bc30f0b0ec36a9f3e0417690d99cd *inst/NEWS.Rd
cdf52f862a37230f3d0e8dca2deba14b *inst/RAGS.png
adc2e491ab80753508192f0dfaecd6f5 *man/ADdata.Rd
c8102dd3c954d45c6ede512ab12cae98 *man/CNplot.Rd
a1abf1f067aead87ae0288eb222200de *man/Communities.Rd
8ecb8718367d11ee7e66f615fba3d260 *man/DiffGraph.Rd
ef9bfba346e8bfbb083582d536dfd921 *man/GGMblockNullPenalty.Rd
167f9713a5ba622a83530c5a23c224f8 *man/GGMblockTest.Rd
9f2879623a7a9156aca467ef87b04816 *man/GGMmutualInfo.Rd
e458138ab50926371993178538486303 *man/GGMnetworkStats.Rd
d13cd1104830ee1e77c258a61f43507b *man/GGMnetworkStats.fused.Rd
7bb128ef85b88eec8ccd25b5eae27650 *man/GGMpathStats.Rd
02f16fbbc810d4791258d5869555f4b0 *man/GGMpathStats.fused.Rd
02d2f08e0e46a4f315f217b38e666e94 *man/KLdiv.Rd
3afe09c2ff0a3fb74b05debba75e22ce *man/KLdiv.fused.Rd
ad08315fed91be312a4eeb781b972626 *man/NLL.Rd
a593a524d279f850398e1aedbab90ea6 *man/Ugraph.Rd
bb8917c989495b174282aca968bdc869 *man/Union.Rd
20186b23de0f5eb6c92580e12e2b2c5c *man/adjacentMat.Rd
db6d32b37bdcab51e230405ba58e559b *man/armaRidgeP.Rd
cb6dee2119c03b1f8351e8cc56ad9892 *man/conditionNumberPlot.Rd
7cef8dacbe2142bd56338b230b309919 *man/covML.Rd
e64335c233331d3ae133ed4a56a2ad6b *man/covMLknown.Rd
09a67697fd79b053f5157c3279792c7d *man/createS.Rd
c1d12140ad9bf8cd6ef4da83cb9534d3 *man/default.penalty.Rd
8ac7701b4fc5410e827d4f2d03b4cd40 *man/default.target.Rd
47efc7d32afc77b12b89359ef90a110b *man/default.target.fused.Rd
87a4872553e7b4ee51d62f31549cb344 *man/edgeHeat.Rd
5e7afe4fd70ee75ca8acfe144ad9f667 *man/evaluateS.Rd
c755d6be91389bb2af25cf472e96baab *man/evaluateSfit.Rd
d67b0b7920139415ddf37d0fe1fdf2e7 *man/fullMontyS.Rd
a7b22ca884a4585224a965c1e24578c3 *man/fused.test.Rd
4cad0e2dacbe301aa22289be41a66196 *man/getKEGGPathway.Rd
6e908af93ef5f6cd3c3237a06655466d *man/is.Xlist.Rd
aa48af9c9d5f4dba595ac9bd34c07a7e *man/isSymmetricPD.Rd
dd7659ebf5b596eaec3000748f160076 *man/kegg.target.Rd
794ccc00b1103ee58d0f954dc3e9c4b3 *man/loss.Rd
8e9b1db54ea2ca0aaf4fe19ae88d4afb *man/momentS.Rd
3a8fbeb761aea7e7e944c8ec829e3bd7 *man/optPenalty.LOOCV.Rd
716ff5c60ff8ccdec0943f349a12cadf *man/optPenalty.LOOCVauto.Rd
8fe91e628afccdc91aa419ba8ae78243 *man/optPenalty.aLOOCV.Rd
a7fbaca64c402c4d201fd1132a58f632 *man/optPenalty.fused.Rd
55ad2f3569f67a91fdb627116c82502b *man/optPenalty.kCV.Rd
d718dceaaa21e8ad707d04ab2a99acb7 *man/optPenalty.kCVauto.Rd
1c04c060c16575092ef219965a08e5c3 *man/optPenaltyPchordal.Rd
e78429dfedeac6b165f7154e8572e148 *man/pcor.Rd
6cbf2009e066d2f17337cbcdcdc82706 *man/plot.ptest.Rd
b3c9d2d1cccba1dda3548d25fa59919a *man/pooledS.Rd
3711742cf42bde2b0d584220fc0dfbd4 *man/print.optPenaltyFusedGrid.Rd
44a9fa768e71b0c1c7951efe56dbb14e *man/print.ptest.Rd
58c12224a35c87bc1c5ab8e991dcd2fb *man/pruneMatrix.Rd
283cc7ca36ac13f9da18c71533268784 *man/rags2ridges-package.Rd
b25e6abac21cd201f3117df64c8d2f26 *man/ridgeP.Rd
1c014d01bc9e98e3bbb84a197b822811 *man/ridgeP.fused.Rd
8274d995833f44dccd8bd8fa6c905737 *man/ridgePathS.Rd
e9527a74a6f682c40c1dc50791fdb596 *man/ridgePchordal.Rd
44cffcd005d12e374e11c558a418854c *man/ridgePsign.Rd
13c2876787b4aef826a0cc108d43a51c *man/ridgeS.Rd
61ae0c0947f535824700ecc3b54d667a *man/rmvnormal.Rd
2e1d61ab0d7ec4dc02daf1e9e3b66d21 *man/sparsify.Rd
ca6ee3710b7b5f7c95265e05d86d0ede *man/sparsify.fused.Rd
6160902130a81a70fe4f5dab4e877d86 *man/support4ridgeP.Rd
35c1867478cbdb264751547a3ab51b2e *man/symm.Rd
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars
9bc5aa7d4334d43640f515c9a1fd70bd *src/Makevars.win
def256a7e46ac681ef734cb47b87e043 *src/RcppExports.cpp
77e2ca74db33640616ce67899023a635 *src/rags2ridges.cpp
9b5628ba22813aab0c9d786f412a9f12 *tests/testthat.R
f5926de26e9a03d680bee2e9f791385c *tests/testthat/reference-values.R
3c03eeae250770a8aa1aee2858690aee *tests/testthat/test-armaRidgeP.R
1ae31eb3d8b999e31de16ba962a22315 *tests/testthat/test-armaRidgeP.fused.R
3f2e0fe494e20aaf1a5c6d771ee9f22c *tests/testthat/test-default.penalty.R
0f6a90617dd090bec06908a91bea0988 *tests/testthat/test-fusedUpdateX.R
cac948750b22790aa228e4754848d0e3 *tests/testthat/test-isSymmetricPD.R
88cd0d7535b4f9420c49ccdc47b453ef *tests/testthat/test-pooledS.R
baca779de1b9de159b33a5d4d173b5f1 *tests/testthat/test-xfcvl.R
