Package: rabhit
Type: Package
Title: Inference Tool for Antibody Haplotype
Version: 0.1.0.0
Authors@R: c(person("Ayelet", "Peres", role=c("aut","cre"), 
                    email="peresay@biu.ac.il"),
            person("Moriah", "Gidoni", role=c("aut"), 
                    email="moriah.cohen@biu.ac.il"),
             person("Gur", "Yaari", role=c("aut","cph"), 
                    email="gur.yaari@biu.ac.il"))
Description: Infers V-D-J haplotypes and gene deletions from AIRR-seq data, 
    based on IGHJ, IGHD or IGHV as anchor, by adapting a Bayesian framework.
    It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
    Citation:
    Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
License: CC BY-SA 4.0
URL: https://yaarilab.bitbucket.io/RAbHIT/
BugReports: https://bitbucket.org/yaarilab/haplotyper/issues
LazyData: true
BuildVignettes: true
VignetteBuilder: knitr
Encoding: UTF-8
Depends: R (>= 3.2.5), ggplot2 (>= 2.0.0)
Imports: dplyr (>= 0.5.0), reshape2, plotly (>= 4.7.1), gtools (>=
        3.5.0), cowplot (>= 0.9.1), stats, dendextend (>= 1.9.0),
        data.table, ggdendro (>= 0.1.20), gridExtra, alakazam (>=
        0.2.10), tigger (>= 0.2.11), methods, htmlwidgets, gtable,
        grDevices, rlang, RColorBrewer, tidyr
Suggests: knitr, rmarkdown
RoxygenNote: 6.1.1
NeedsCompilation: no
Collate: 'Data.R' 'rabhit.R' 'internal_functions.R' 'functions.R'
        'graphic_functions.R'
Packaged: 2019-04-09 15:01:26 UTC; ayelet
Author: Ayelet Peres [aut, cre],
  Moriah Gidoni [aut],
  Gur Yaari [aut, cph]
Maintainer: Ayelet Peres <peresay@biu.ac.il>
Repository: CRAN
Date/Publication: 2019-04-09 16:13:02 UTC
