efdde7a26732275f6e3949f65751c46b *DESCRIPTION
009f4fae016db53283456ec7a3bb8420 *NAMESPACE
575fd9f9852e5885fce9af349c61fceb *R/Classes.R
7d6aacd2c9d33a435ba760b5c36a1222 *R/Generic.R
eac845386a29c091263c4a96d8e741e2 *R/Rdatadoc.R
bc0bec277060109f3ff1a654cf3e01c7 *R/correctionParams.R
ef83e3eaf9559126eda10f9d535eae2c *R/degradationParams.R
fbfa2d230ce586de9d35d6111141515b *R/errorFunction-sets.R
9d04648a2731572c072f188206c755d8 *R/estimateExpression.R
437d6c8a5f236424ff346a3238d83224 *R/estimateParams.R
028d2a92ff2fabd4c46aa9111291982f *R/getParams.R
08cb5a2e6e299f258b6a744e5311e58a *R/getRates.R
e9964cff8c53881bf1855ac4eb453d24 *R/otherFunction.R
846ccd002ef869d025ce77d2408ada2b *R/plotRates-func.R
cf546c96e2cc229bbd4abaadce8bfcb8 *R/plotRates.R
73e2d96b95a681607e79ea7f90820d73 *R/predictExpression.R
ad7f181dcb8909b1fd9e6b73c6f8ed2a *R/processingParams.R
851806f33ed447eb9f27c4401d50eea4 *R/pulseModel.R
073872f6c948b0bdaa4bd42680bc65a6 *R/transcriptionParams.R
f3db3ae3d7bb3657e7007af9e1bb904a *README.md
7ed1d154a6ce5f84ee54db5614f291ee *build/vignette.rds
cdf1c35cc6ac293b13a2b1eb14609da7 *data/datalist
be3eb3b19f096a87e7c87417bb173641 *data/preExp.rda
c917a1474666df7ff6962b7323888975 *data/pulseRates.RData
da2d1c9972fb372d0f38d995555e2818 *data/rpkmSim.RData
70fc36b53e2d4d8894fbe1954fffe1f7 *data/rpkmres.rda
174fd53511efe7da6f406615c0020a9d *inst/doc/tutorial.R
1e0e9359bee848382f67b6ddcbfbd781 *inst/doc/tutorial.Rmd
cb058cb775725a7688758c3fb8ff0281 *inst/doc/tutorial.pdf
7d0788939a58e5ce4903c9e87b03585e *inst/extdata/pulse9.Rdata
ccf7bd817dfe4889025bc4603e4a4a60 *inst/extdata/test1.sorted.bam
23d46df147a7f219817fc0dbf127e36b *inst/extdata/test2.sorted.bam
3a7895fd446630dc77b572a3a05a3ef1 *man/correctionParams.Rd
014edd7e24bc0418b864473633e902fa *man/estimateExpression.Rd
7baa6121d8286cfc382c9e6f89b82142 *man/estimateParams.Rd
c8c897d8f739977683ff91071e05550f *man/getParams-pulseTDmodel-method.Rd
e930bab0e5af83a4ed27a691e5b6a721 *man/getParams.Rd
11ed76d3bdf9e999090ce4bd9c30290d *man/getRates-pulseTDmodel-method.Rd
72fed4e8bbd495faceff7431235ced51 *man/getRates.Rd
de590e0c6f4af2ec2a3685a2d0c39567 *man/integrateA.Rd
919b870c8352985e73e01ba187151df5 *man/integrateAC.Rd
c71986fd75ed762870ce62c9138b085a *man/plotRates-pulseTDmodel-method.Rd
dca24598d3e57092a6d407118520ed27 *man/plotRates.Rd
f509431abfee3d2ac73b34a64ca65d7d *man/preExp.Rd
ef518ce6bfa927e863dc334d5d8f4c4f *man/predictExpression-pulseTDmodel-method.Rd
30db4dc6f80de4d2d1f3e2bc8f79e501 *man/predictExpression.Rd
f35cc0e702a56da246129174cdab2e93 *man/pulseModel.Rd
26d7701fdf921aec4ab2f6ef1d7b2225 *man/pulseRates.Rd
fd1e7121d0ec8856ce247b09a1949a69 *man/pulseTDmodel-class.Rd
1de37d8622be4660c46bc6e3cdf8bb08 *man/rpkmSim.Rd
4293e73220a88bf7d0ca25306efe3578 *man/rpkmres.Rd
64b6cdd4304f20bb0c8f1844f1c3ca06 *man/splitA6Params.Rd
f5c91b3abb3dbbc0d49c5c230961cf52 *man/splitB4Params.Rd
578b9fbb30263d14446bb236cf2fefb6 *man/splitC5Params.Rd
1e0e9359bee848382f67b6ddcbfbd781 *vignettes/tutorial.Rmd
