c567ec93d0fbe878c794dd26abfefe6f *DESCRIPTION
90c4b9df76b8875fc6f5d78b2a1378bb *LICENSE
cbeb92a9e359c40b6f95be6cf880230e *NAMESPACE
f210774e6e2fbfe73612f368366d7e91 *NEWS.md
aad8322531de3629a8a4a6b8d4a88faf *R/anova_protti.R
44a998d3c0a26d666eb767bf9a77af3a *R/assign_missingness.R
f1136f1e2fd738ff914be0b68c09b5da *R/barcode_plot.R
122ddb77582bbb13526413048016031a *R/calculate_imputation.R
20a60c66736f7d6cd6a2caea8823260d *R/calculate_protein_abundance.R
d316211b8b99092d4b12d7ae5e2d14c7 *R/create_queue.R
94f4c6ca0dd64a956b8bafa817060841 *R/create_synthetic_data.R
e9677775aec9b4d129beab139f34bb2f *R/data.R
3b1f8352df549d03d33eb0371ae60c01 *R/diff_abundance.R
cd1fb2a879daf10bcd6e30e4fb675197 *R/drc_4p.R
05b3cbafa5272bea9ab7795ace2cf97d *R/extract_metal_binders.R
4033ea11d448207dd2161856b405efb9 *R/fetch_chebi.R
14317eade0b6447a1918dedb2d672a60 *R/fetch_go.R
d78bb6e8846f1dc22f391e79a69b6810 *R/fetch_kegg.R
9e1013e27a67f0a7db18594e3444f662 *R/fetch_mobidb.R
554d0c70ca86e5c25dc2b5119e190968 *R/fetch_uniprot.R
20c1bcdd6d31e493a581a63fcdc8c285 *R/fetch_uniprot_proteome.R
1686642d7dba948b0a2908db7d0944bb *R/filter_cv.R
7441b6b3514f6968775c486fb7873baa *R/find_all_subs.R
42fd56da857c998a18882fb00023c0f5 *R/find_chebis.R
dd7a0fe20d26871ab8f7900913910844 *R/find_peptide.R
0f4a69bf8883d2bc4a416411c1a61178 *R/fit_drc_4p.R
b4579dfe30c93eb2b4e67238acc843e0 *R/go_enrichment.R
b59bf724d70354911f77c09d9219da9f *R/impute.R
0ec9c635dd82159e499ee34c07e89d09 *R/kegg_enrichment.R
a4ef5017438f424ea1e6304215a0e78f *R/median_normalisation.R
1d705cf2ded2e300ddd5a9aa78a5cfb0 *R/network_analysis.R
c9970fe0c29881ee8f3451d3baec68c9 *R/parallel_fit_drc_4p.R
109634c66a9030feeddfef789748285b *R/peptide_type.R
f54dd6a03228275c4b5c7121b19c9a0a *R/plot_drc_4p.R
b10b34dac78b66fe373199ffb087a029 *R/plot_peptide_profiles.R
57ea37b2aa25dacdb22e9700c48a119d *R/plot_pval_distribution.R
f5c7f0ea334727f16857408131cfa47e *R/qc_charge_states.R
4cbee4b61f6c61b9e2a57ef20cf938ac *R/qc_contaminants.R
7551fb43d855846f942d7d08d53b1845 *R/qc_cvs.R
a9acbb2e6abfc443179e40c9da533de7 *R/qc_data_completeness.R
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67812c7afb1e19d52583bd2385aa6ab1 *R/qc_median_intensities.R
7b551b47e7959eb590594d44bfaaced2 *R/qc_missed_cleavages.R
a9e7b001ab7b6f384bebaad5868a5cab *R/qc_pca.R
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c7fa23956f7dc6f09de512e73fdbed7c *R/qc_peptide_type.R
da52cb50811d69a13a9778735bfa46cc *R/qc_proteome_coverage.R
b167a87ce5c532626fe9e05aecc603a1 *R/qc_sample_correlation.R
faf04ff1be6618d8b1532f647c9bed58 *R/qc_sequence_coverage.R
3a1be49c73214f5a1af9d6701a7a74af *R/randomise_queue.R
b7a912a340285596999fb69b5191b4a6 *R/read_protti.R
ce84e146ef7520aadd579c32de8bd36c *R/replace_identified_by_x.R
03af14a7e135ece39cc12e4f9bdaf2fe *R/scale_protti.R
87476aad318ae4151ae6138126f57c71 *R/sequence_coverage.R
46c6d58d14a0e7d58ace66c2089fec97 *R/split_metal_name.R
dad5295a5f66006295bc81da549a0b94 *R/treatment_enrichment.R
913520a70a36be2798c8c5aa68105c9b *R/try_query.R
ea2c8cd00ffd116c5d132fb606c82851 *R/ttest_protti.R
1cbf15cd7b0ef111fa165a3b50e3199b *R/volcano_protti.R
b3a10905cd5aac33805cfc9b09480ab5 *R/woods_plot.R
229744a6073246a4127c558dd79990fd *R/zzz.R
4e096e20aab243d3b12ecb203c95c077 *README.md
eed1b8d2bd1c66e95dff71a752de09f6 *build/vignette.rds
4b363c993dfed46027455c195bfb7242 *data/protti_colours.rda
3b855c61e660b4a28a1e82b95f5ee49f *data/rapamycin_10uM.rda
56fa120ca980cd2497fddb36aaae5bc0 *data/rapamycin_dose_response.rda
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8818ceffa47a6ee4db906c87f631ad88 *man/barcode_plot.Rd
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85f85c3f2662a8b474ffbdc16f5d2128 *man/diff_abundance.Rd
3f1f445f80d3af4f13a347d4a40275e3 *man/drc_4p.Rd
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5e4692e3d3748c9925d943a7fafe3ac0 *man/fetch_chebi.Rd
1a0ee6935d8c53e0c99c57e855529d02 *man/fetch_go.Rd
600b55681d45773207f7b54c948f5cab *man/fetch_kegg.Rd
ca56f7df89256a2c7a42dc84e916d9d7 *man/fetch_mobidb.Rd
bcbd77cd2711e034d2a09e001168c53e *man/fetch_uniprot.Rd
df118ef36f49e13625496ec41eaa3113 *man/fetch_uniprot_proteome.Rd
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b85ee3c5601aef0c50f03ececbe396a5 *man/fit_drc_4p.Rd
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638e12c33c569df718fa0812240936bb *man/qc_pca.Rd
dd28ff0ff0d7d73cd27e61fe298d6ac5 *man/qc_peak_width.Rd
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3e4c08bcdcb13c913a19c5def3c5061f *man/qc_proteome_coverage.Rd
9d03ca7151e4c58aa9cd43b29e15272d *man/qc_sample_correlation.Rd
a15fc4e7785bfc645595de0fc13f156e *man/qc_sequence_coverage.Rd
0c94ec361c08678b46c2386b1eb135ba *man/randomise_queue.Rd
f657a14255457c08d0269a569c9b703d *man/rapamycin_10uM.Rd
72c40e24fdf935462e275282b991f682 *man/rapamycin_dose_response.Rd
9fa329787ce0e02e37fe356a0a39ed4b *man/read_protti.Rd
cb8c23846cd8fdd43374646a5874e467 *man/replace_identified_by_x.Rd
786f12f3bf6ade9462f92de85d45ad5e *man/scale_protti.Rd
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31f0f8be844f7ed2a7ba32db80d3c7c8 *man/try_query.Rd
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da35eed7cf278eb5a3a4a4a4d50880c6 *man/volcano_protti.Rd
7324efba8492bcd44d459948ee09a66c *man/woods_plot.Rd
cc3091e3e30cd5fcf36cc58738cf134a *tests/testthat.R
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063f5d2b889fbaa0b918a2c9ac4433c8 *tests/testthat/test_import.csv
6ad76f829779425ee699374e019bc00d *vignettes/data_analysis_dose_response_workflow.Rmd
3c63c98e719258fa5525481027b02ebb *vignettes/data_analysis_single_dose_treatment_workflow.Rmd
0c5910a7fcd0a8eaa3419e82e85a3e40 *vignettes/input_preparation_workflow.Rmd
4faccda613ff78a3a94f9957c8cf3fb2 *vignettes/quality_control_workflow.Rmd
