79fc77115edc15b96e28ee8728a9f87a *DESCRIPTION
3a925589a8f6807c545af095ca1a7086 *LICENSE
24fd1382ccacb3133a16325711ab05b4 *NAMESPACE
e969caaadd8e601c28d7ba878aa9c547 *NEWS
edbd5ab5f496b93f92205dec12072b2e *R/desc01AAC.R
9130a04f62562f35100aa2b8023e86a1 *R/desc02DC.R
75727065e300c7b26a9b8b1a37ebe3aa *R/desc03TC.R
dc3113413c0e976a8a83dae2ee609634 *R/desc04MoreauBroto.R
356ac42c35c05cb48f67f20a95391a75 *R/desc05Moran.R
528772dcbe58ce7051907e7c4edce81e *R/desc06Geary.R
b56351e9d842349cfc77f7f58e2d8237 *R/desc07CTDC.R
588fcdb766faf5c867f2774dd0ac8884 *R/desc07CTDCClass.R
d6b846eee534632fa425bc173251a9a3 *R/desc08CTDT.R
d6ccb7a4da4a61a9e801ae2903e80bf9 *R/desc08CTDTClass.R
a78763497bf7903ec6c3231cbadfe332 *R/desc09CTDD.R
3cdf3940b3886dc33abc8109b7b0d8c3 *R/desc09CTDDClass.R
2711156d12fa11674a3368bbdbead835 *R/desc10CTriad.R
64cc48806b1a809035b6836b854d2060 *R/desc10CTriadClass.R
316b52624f3bb8a48c2f1ce0865df7fc *R/desc11SOCN.R
53fcddd4b3539f46d4f8c3b883e0647a *R/desc12QSO.R
c7d400daa71a48b3edfd6ad8ea548c3d *R/desc13PAAC.R
fb7731c43702b6947da2ccf97f424fb3 *R/desc14APAAC.R
1a5c5f32cf7e342835db560296893fe9 *R/desc15PSSM.R
52c6f2251f9c934a74e3db5d17cffeb7 *R/desc15PSSMAcc.R
6432bc229d690ddefac1d1437371723d *R/desc15PSSMFeature.R
8a1f599174913bb19d58ea18b6765018 *R/misc01readFASTA.R
23a977543dda08eb3ad5ad6beb39568b *R/misc02readPDB.R
477b55e4f6f2865d4639657332aecb9e *R/misc03protcheck.R
0238cfbfad05690c00c85d2e55c2d06a *R/misc04protseg.R
0ed65894e32fdfc4ad8ddd01fb8194f2 *R/misc05getUniProt.R
1288989ad74cbe807b82717c29a44c89 *R/misc06acc.R
a93d0d5a605e1632470ed27b8f49875a *R/par01parSeqSim.R
0a0a08513bbcdb91abc14957abcf1770 *R/par02parGOSim.R
8c02b3b908559c09fbe70f388bedc97f *R/pcm01extractScales.R
88c2ad8c010191c3502b63e7c12f71ca *R/pcm01extractScalesGap.R
c0581b3132dcb5b7dee9faee25afd093 *R/pcm02extractDescScales.R
ba6943b7af70f87af938a0d49965d821 *R/pcm03extractProtFP.R
a9caead858eb7ecd1ec97cceac4629e0 *R/pcm03extractProtFPGap.R
55aa73104a2db0def66889550734e2ef *R/pcm04extractFAScales.R
2f2365bd5221bb976c47111890551d4a *R/pcm05extractMDSScales.R
87ec5c874b32ccd26d5bd5e7a503ff5b *R/pcm06extractBLOSUM.R
43361b3d52125c0b46a47d41f86f482f *R/protr-datalist.R
629826435e40a2698cf9b18f8f4690ac *R/protr-package.R
e9f8b0ccef4cb1791d14af402da6fcb7 *README
8cdc05afa582524ea2baa45a454f21be *build/vignette.rds
74fd2419e84eb552d3d7bf73b5f12180 *data/AA2DACOR.rda
5b7c6f94b51a6cc85f679be46f8ca65a *data/AA3DMoRSE.rda
950a7207428adbf07025b3ea572ca17e *data/AAACF.rda
4203a744b06cc6d4d092fd44978fb1e2 *data/AABLOSUM100.rda
98ef4230c3ede64cc0f553b66b42c477 *data/AABLOSUM45.rda
d5c768c167c8576867c20de62030e3b8 *data/AABLOSUM50.rda
315986a4d4ec8307369d01e87c48a883 *data/AABLOSUM62.rda
e54c9332a0647029d24f60721345031c *data/AABLOSUM80.rda
94fc7c9344f718ce131af54429247390 *data/AABurden.rda
3c5a76840812febe22ec1201f8327fea *data/AACPSA.rda
fd12e4bda6ed3b63b9f7e8b48aeb45ab *data/AAConn.rda
f8a9e8d2156c0594a3627cb3e13687f1 *data/AAConst.rda
6271d5667f368f5e44df2c3dad6cdc61 *data/AADescAll.rda
d4abc40bb18cd6eefa4eea3278d67b72 *data/AAEdgeAdj.rda
81ef809ecf130e9ad4a781b4db1cd0ca *data/AAEigIdx.rda
78aaa7c32d779ae8629c68fb5e00250d *data/AAFGC.rda
b45121a25eb42ecb4f8e5815505dc057 *data/AAGETAWAY.rda
fe1d8b062c9f818b277fe1d42c97dbd5 *data/AAGeom.rda
c13402f9c748afa5eac93b09c1e8b598 *data/AAInfo.rda
31c26f7333f4590a28cd1f2033f8f196 *data/AAMOE2D.rda
7827194dbf08a95ea0e2ac1dad00372b *data/AAMOE3D.rda
74d94a749d98f5b469c42713065db798 *data/AAMetaInfo.rda
a78805067601b819e7da557c20a0b93b *data/AAMolProp.rda
18bc963fda844b819dd26df22154ef26 *data/AAPAM120.rda
f6a62229b8fc278ae2e4372a5a8dcd08 *data/AAPAM250.rda
e9bf133d41e73382cdab31e266a880ab *data/AAPAM30.rda
eee718d631033184beffa3f620b2f3e1 *data/AAPAM40.rda
50221d8d338b3353dec10a6a4c6fd14b *data/AAPAM70.rda
ce7e34c6f0e41061fcbd152d71e4657c *data/AARDF.rda
55a3b6a3bf6921d2aa04f449927e761e *data/AARandic.rda
5206e73c17abdf7ca505c5ef044a9804 *data/AATopo.rda
629742679f494f564d681b3bd25b4f7a *data/AATopoChg.rda
cd06e7f0cd64b800197fb41332eddc95 *data/AAWHIM.rda
e4dc18863083c330da419217c919c2e7 *data/AAWalk.rda
fe761e0c115a58ab00a61ad6c4f8801e *data/AAindex.rda
d03a93b0f1688c1a7361153055bf85ea *inst/CITATION
19ba6043af711510330d0e15bba396e3 *inst/doc/protr.R
bcd8525900c1230e1a7a89fd768c1b3f *inst/doc/protr.Rnw
f4305f631ac100afe6bfe1feb8c5fc72 *inst/doc/protr.pdf
ca35c56c0c379f292f8fab68b3a19f61 *inst/examples/protr-package-ex.R
e9a8c531da4011cd6c79e837c7ca9775 *inst/protseq/4HHB.pdb
4a16b7ca86e201cec2c42382c4445180 *inst/protseq/P00750.fasta
dc85c304db0d96038b7cdab71913b2dc *inst/protseq/P08218.fasta
3bacfe7684c62676c828bb7d22c25ef0 *inst/protseq/P10323.fasta
4e16519c3091af55bba78c73ccb5ada4 *inst/protseq/P20160.fasta
12d1df65f398dedba3390ad8c4d546f0 *inst/protseq/Plasminogen.fasta
4fc1d897c523a5634e1b0a166d9b21ec *inst/protseq/Q9NZP8.fasta
5c90cd7a3f12abadb17c27732273d064 *inst/protseq/align.fasta
f4cc22e4b007a23c12d0be0d77cc99dd *inst/protseq/extracell.fasta
8ee3aee7929db8ea3941fc4e7dc54d06 *inst/protseq/mitochondrion.fasta
0c58ef02dc11e90eab4d304185ef7df3 *inst/sysdata/AAidx.csv
4b58694e15ff7e2952b9884c34fd4c57 *inst/sysdata/Grantham.csv
b69fe9c3517b1bb04d79fa1833c35363 *inst/sysdata/OptAA3d.sdf
7957cc59a12a8726b53d21149df781f9 *inst/sysdata/Schneider-Wrede.csv
4e751a7c68814cf7f071905a15378d91 *man/AA2DACOR.Rd
09c6f7bc56dc1ef68e0d5730a692c7ec *man/AA3DMoRSE.Rd
b7c9eefdabae36989ba296f2f51ec47e *man/AAACF.Rd
a8b9a23e0892c4a7a1a551d823fd2dca *man/AABLOSUM100.Rd
215109d655f7f6873697387167adc925 *man/AABLOSUM45.Rd
4bbf082138856735e6a4d3e873b01158 *man/AABLOSUM50.Rd
da3c0906c1af58ce89bae210a01ac4d8 *man/AABLOSUM62.Rd
09f3deaed55326b2eea7e9b7f598ec92 *man/AABLOSUM80.Rd
c65f07274b48d3db6b7ee3fd350fd07a *man/AABurden.Rd
8e03ded1304847f491dc082c897f909d *man/AACPSA.Rd
b9d04c6de322fe2c08fddc98adf76e73 *man/AAConn.Rd
e852420a90a4756dcf8581b272f1a307 *man/AAConst.Rd
6060cbc2fd751dacdc86dc10ccdd49e9 *man/AADescAll.Rd
d89162ff407cfb4e385ec383eb376f76 *man/AAEdgeAdj.Rd
a236871ef334850dd807ec4a874bb9e5 *man/AAEigIdx.Rd
bc7cc2c5d5ad4767b18f8069b0bb07c9 *man/AAFGC.Rd
5ec6da98c1ef0c92c485de1a2210863d *man/AAGETAWAY.Rd
75853a1bc0b0189317242b6ddc764664 *man/AAGeom.Rd
25cb8d7e19fa55f70feca1b356ec367c *man/AAInfo.Rd
d6e2835c2dbcc0dfa91679685f803233 *man/AAMOE2D.Rd
3a6355008c4ed472b7ea4ac69efeeaaf *man/AAMOE3D.Rd
6e1687d2ca22e2eb4f581a90067eea3c *man/AAMetaInfo.Rd
571640be544539f556c5f806e440415b *man/AAMolProp.Rd
e2a43a128e21d39fb766cd40729fe264 *man/AAPAM120.Rd
7d5e720d101c710578a3e2bd78dd6aa2 *man/AAPAM250.Rd
3bb3588bda0aee4be233145c46290c7b *man/AAPAM30.Rd
d21f6a57508b2ea76f3768755702e759 *man/AAPAM40.Rd
4bcf363df21a88f328c265e87e254127 *man/AAPAM70.Rd
6c308dcdfda252423f5d419e53969a6a *man/AARDF.Rd
c639ad7ea2e1797c098b7d742af1c716 *man/AARandic.Rd
0d8d274f7b6f4362ddc017e8aac02877 *man/AATopo.Rd
8a4b52efc8aa74e21f5da6d14544b9c1 *man/AATopoChg.Rd
1151b2a7e6d9e6ccb95a0390f1bfff94 *man/AAWHIM.Rd
58bb08f1649ab4e7c81c269626e881ca *man/AAWalk.Rd
4dfadbcc72a4517d34d0002325a51bad *man/AAindex.Rd
c6c1beb9d3c143f0ad7a8a5c74a9e913 *man/OptAA3d.Rd
0b1f1854214f45f63fd9cd92f4909d4c *man/acc.Rd
387c855d59163adc84cbcac12a936ce5 *man/extractAAC.Rd
10ae231251e13c46fc1f20d509fa2ad4 *man/extractAPAAC.Rd
41f98c8d463c3aa066234d534e24c1b7 *man/extractBLOSUM.Rd
7b38e22b989a5d66daa16065e5a7e8c4 *man/extractCTDC.Rd
c66720707069a60422b464860b2459c7 *man/extractCTDCClass.Rd
2b48d74a9d2eb3342a250561d8d252bb *man/extractCTDD.Rd
5e80892ec090d0c5c5b0b9974d308851 *man/extractCTDDClass.Rd
f56671b979952fa51b8e6c52fa92d936 *man/extractCTDT.Rd
b31bd7844f34880ec9bde36286eb9c39 *man/extractCTDTClass.Rd
f414ccea290cc74d9870ec7a7bac102b *man/extractCTriad.Rd
a37b00268411a4c46d81fb3341ecc818 *man/extractCTriadClass.Rd
7d21ed6e828df2ee0849005de8c811bb *man/extractDC.Rd
6bc9759b739c470e09fd49603cc31eb0 *man/extractDescScales.Rd
e5da89574efc6f7c03a8cce0562cd549 *man/extractFAScales.Rd
d5afdd6989bef95d1927376501c9ad38 *man/extractGeary.Rd
86e5b5cff674ba2cf4067b451278ea7a *man/extractMDSScales.Rd
ad33c839abc975d49c625a09d0df8f78 *man/extractMoran.Rd
d87dd172dcdd983389fa8c0c4aaac056 *man/extractMoreauBroto.Rd
8afd0b45787e578ca624a41fe770d0e2 *man/extractPAAC.Rd
c5be52d63720beb6547931405b126754 *man/extractPSSM.Rd
2730c739e56b08ea31a2cf3568e6a9ad *man/extractPSSMAcc.Rd
05fe1ffd5eb86b596d555b6a2e30d6dd *man/extractPSSMFeature.Rd
cfcaada2110c6fa0da02bd58ed6e90f9 *man/extractProtFP.Rd
226c60c828a565924db6aff1dc9f0d90 *man/extractProtFPGap.Rd
ec64c4547eb7fe4713708e3c6870a5cb *man/extractQSO.Rd
12c2e4108c93751f29ce0f957732bc36 *man/extractSOCN.Rd
da6aa5da99a3b1a711d595210b1a1da8 *man/extractScales.Rd
0ecdc68cfac0ea32e6c4ebf59536e4ca *man/extractScalesGap.Rd
d33f78796c2ab68d90f53e49ccf0b2e8 *man/extractTC.Rd
1c42fb5034cc943a627c625191ed5c3e *man/getUniProt.Rd
2226c9a3c0b0f82ea5a4a5e0ff7d7137 *man/parGOSim.Rd
23aec9424cd664c5c4df18b83a05f4a8 *man/parSeqSim.Rd
1fb4f0b9e9903996bf77457f8e58971a *man/protcheck.Rd
db03cca75cfba5205a31b1449f9eef04 *man/protr-package.Rd
e8b34139d9428d527598ab9c253cd4c3 *man/protseg.Rd
e0bb0095ed5219513cd54380168fd090 *man/readFASTA.Rd
505568a580c9c8dec20776441a840d23 *man/readPDB.Rd
b2a744c29fe78c463b4ef867e993ae3d *man/twoGOSim.Rd
7d2e0018e16f04005178ce243f24c200 *man/twoSeqSim.Rd
a8b92f7ece00a96c4b1c3ed99997a6b7 *vignettes/fig/AAindex.pdf
9cd0f701809c1de6eb369ece652cbb95 *vignettes/fig/APAAC.pdf
24117eed39299675686d5533b15e4cf6 *vignettes/fig/CTD.pdf
eacbe38823569968d7e4413412fc9cab *vignettes/fig/PAAC.png
1aa13d2372e2581dbd9164c13e5898f2 *vignettes/fig/QSO.png
87067dceab1764429e1f5ca7f83fb6f2 *vignettes/fig/ctriad.pdf
909d7c3ef95eca552daadc4116caf3de *vignettes/fig/logo-panel-text.pdf
bfefbe1e89dc7e4966676ef0c30f8e1c *vignettes/fig/protrweb.png
2e53c3a9280f6c3fe9db261ffb8ab18c *vignettes/fig/roc.pdf
bcd8525900c1230e1a7a89fd768c1b3f *vignettes/protr.Rnw
a89ca75d7562fbe92503df3ced38690c *vignettes/protr.bib
