721897edcdb7dbcef8a41929f8723a5c *DESCRIPTION
d565bb7f4ec66a88641100af299a0e1d *NAMESPACE
05bdec3ed057f9049a9082c712aa489b *NEWS.md
81c9b019b2c16e5c7124a36614f6b71e *R/RcppExports.R
01cde507c5d5e55e797ad1139adeed3e *R/aldex2propr.R
b887c19bf022fe5fe5cdc8565d3c0531 *R/deprecated.R
ad9bac9121a00d2bc230ecd205f05cef *R/deprecated2.R
64fd4db226aaf2e755ce0313aad7018c *R/global.R
8d979d49e6d2de0c716c9a6c12795236 *R/methods.R
0b4893e99cb5bc7cfd80236b7a2d9337 *R/prop2prob.R
4474f46962ee8df30f3fa4b02e04a29f *R/propd.R
f164508ea487664433e258a0fa7834e8 *R/propdViz.R
fa6205626e683e0ec43b41e0acafa57d *R/propr.R
da5d625b63179c066372091aa823c932 *R/proprViz.R
641e20cada832fc8982131ccc7bda490 *R/theta.R
87938842c4ac82eaaf773e687768a419 *README.md
5ce8b577741214ef5e1b05c9a8acc9ba *build/vignette.rds
85afe8e966882d64a79de4ad8f198689 *data/caneToad.counts.rda
73203b36c5c9e855bd52d9beefaf5195 *data/caneToad.groups.rda
f937a82f42500a3aec725965e09b3ac8 *data/datalist
56ae3d28264f2ee57da266bcaafea50e *data/mail.rda
adc04cddc13d546ed30be8cd05f0c29c *data/marg.abs.rda
33686aa8bfaa0f147206bc95b93feb12 *data/pd.d.rda
4fe6f1c8b45eac1bdb1b093cdf4fa6f7 *data/pd.e.rda
7c2f3c5e5bd43dc0aa8337c68d8f1342 *data/top.counts.rda
ed6a318a02091045e6fd3b1064cd7929 *data/top.lr.rda
7300a38fd7b1982307c40dbe372b051b *inst/CITATION
0d3367acb9f2735c5ccf15cd4bf2994b *inst/doc/a_introduction.R
de5ea8db708de283072c01540f4c20dc *inst/doc/a_introduction.Rmd
b8521d647c00f14667d48c1db2695283 *inst/doc/a_introduction.html
4ed6a9581eba3ae5c93b78ba0e73ed3f *inst/doc/b_visualization.R
fa77645fd963270253ff4ca76493dc21 *inst/doc/b_visualization.Rmd
7f3d8f531a32df33fe523ffae44f3898 *inst/doc/b_visualization.html
d1ad2bea45ee5bd03f5c30ff5408af8c *inst/doc/c_indexing.R
c1df1951c507a95db25c2d90aa75aea0 *inst/doc/c_indexing.Rmd
e9a356bf0a67664a9e37ef1bf99476ab *inst/doc/c_indexing.html
fbbe4b58eb9d04467b6fa097c4923550 *inst/doc/d_advanced.R
91bd664bd397584c83393e0678fdb677 *inst/doc/d_advanced.Rmd
2245f5336e2597c47462e5942619240a *inst/doc/d_advanced.html
483013ee2dc09c151cb69c13a0df97fd *inst/doc/e_differential.R
a0a341b6babeb16abb8b7f092d1fdaa0 *inst/doc/e_differential.Rmd
e1db979b7f39612b965b30f3ae93fd14 *inst/doc/e_differential.html
33a9bed57d1e32b52a309e6280fd2ddd *inst/doc/f_questions.R
85d948cd2caf933f952c47ca945044d1 *inst/doc/f_questions.Rmd
dc9c10d046f0b012a765806e84108c69 *inst/doc/f_questions.html
427a5e0e1922bf1f26ffcf145b0f2514 *man/abstract.Rd
fd9e9ce2d1945ebda1a16405a88dc8e3 *man/aldex.cor.Rd
2f058dcf3c697dc7d60c76b6b76c4efc *man/aldex2propr.Rd
00e6f82dab49c508e8c49354e1b8acec *man/alphaTheta.Rd
450a72151035e209b023042a4f435b74 *man/alphaTheta_old.Rd
b848e34636f9cb4314643435f4602c63 *man/calculateFDR.Rd
508a6437c9b4dcbc4e437c670dfb0e17 *man/calculateFDR_old.Rd
2f14c5478aa03af2054a06aa62d2b4e8 *man/calculateTheta.Rd
ff3453b79e0c305f989a43c5c79369a6 *man/calculateThetaW_old.Rd
0bedc8716f8c80710bc5d24a737565d8 *man/calculateTheta_old.Rd
6e1495f74dd729a90629470d585418ef *man/caneToad.counts.Rd
1a8b34a2d12cec3e2931afc66a27fa0c *man/caneToad.groups.Rd
1ea9fdd54a7f0b166cfd9246b9bbca2f *man/dendroCheck.Rd
0412fca9593f2bc5f5435aee534e8e94 *man/differentialCheck.Rd
dc76f805d32f000629f002edc06e8b6f *man/ggdend.Rd
65ffe3d35747d897aac6ad54a9ef71b6 *man/lr2cor.Rd
765d4e12519ea0f0341d32467bde7520 *man/mail.Rd
302ed8f1a77bfd5639399a70edc10245 *man/marg.abs.Rd
93876fb9f9959d906a924e29c186059b *man/migraph.Rd
54c4abf52f3af024ffc41cc494231869 *man/multiplot.Rd
83d4bba8034162332b9dd9221eb1d768 *man/packageCheck.Rd
611c3687d5a89174cd5d09aa2e16b1b3 *man/pals.Rd
0763c240d24baa83c55658effddbf873 *man/pd.d.Rd
71e095e65f7fe42ed1edea917ad43e46 *man/pd.e.Rd
3458b68a3a65355be32ae29a2c96b7ba *man/permuteTheta.Rd
c9baab60334ab67c888875a85cf35a45 *man/permuteTheta_false.Rd
2e64b49c1a75601558422ae2b080e777 *man/permuteTheta_naive.Rd
4b14b15b26418f39bd563d10e680531e *man/permuteTheta_old.Rd
3f472d97a15dad190afc64a116c0de57 *man/permuteTheta_prime.Rd
4fca0c79cea6f15dcbe33e402595b01d *man/plotCheck.Rd
488ea1c4356e64f7470a6530f923971e *man/progress.Rd
fba2ae11371baae737b38b4cdc1704a1 *man/promptCheck.Rd
60af8c378f8a0f7999220bc348a8e68d *man/prop2prob.Rd
f22a3a3d9c2dd7058061704f71b54fb1 *man/propd.Rd
e924e970e26943209ea1eda629497044 *man/proportionality.Rd
d6a51e7e86e61af949fa850daf23acfb *man/propr.Rd
69e193aa9e879f1bf164ce7a3a086788 *man/proprALR.Rd
10ef4645cb4e6684df607c7e888f5d6d *man/proprCLR.Rd
94f484f57b6676430c03ef416f7ec9cd *man/proprPairs.Rd
0f4df1768d946b6a56a38c79003fa65a *man/proprPerb.Rd
a497536989dd5bc2f772308a46b39272 *man/proprPhit.Rd
3a9da93d5fc1fa8a5069dc0956c8ba77 *man/proprSym.Rd
e50804736a9fc78fb22d443debd40360 *man/proprTri.Rd
b2a848ccf6f466bf80c34a4fa5f8a324 *man/proprVLR.Rd
43e8c454e137e528bf84a0e9f28f5b41 *man/top.counts.Rd
0b28506628ff9d62bee5a84c53009e83 *man/top.lr.Rd
c0a11039e8eff8328a19974bb39ea3a1 *man/visualize.Rd
4fe6efa16d7bed116d276aa8f4ab700c *src/RcppExports.cpp
c914d3158753fe06893446ab8958129d *src/backend.cpp
d1b16bccebee797475a8dab1a378e9f4 *src/backend.h
6037eb80dc92132bc722f0959507031b *src/deprecated.cpp
a779cf64a383e1f9492b0519439e8158 *src/init.c
33a5b02eae050f4fd5722e193f6ef63e *src/lr2propr.cpp
8dc4ff1bd8be33c97baaa5c7fd2aa418 *src/theta.cpp
e67cb2f9b8a9eefb0937624b3aa8c064 *src/wt.cpp
38a416384180a93d31020bdffb37ccee *tests/testthat.R
f16f9d13e7a2c78d4f1d6624e8abd3c3 *tests/testthat/test-aldex2propr.R
5f19f9636cdc9a9787c948b3d906fd9a *tests/testthat/test-backend.R
81394f709326d86a564b5120dfcb1cea *tests/testthat/test-half2mat.R
33a98eebb9ee257c2f4f782784b13ca9 *tests/testthat/test-linRcpp.R
d0af128ded37b5395fce6a2f134a3e18 *tests/testthat/test-logratio.R
ff00b21c1f3d11c4d38f86bc1638b571 *tests/testthat/test-lr2propr.R
d501a51b8d4df7c61ebae287eedf6a6f *tests/testthat/test-perb.R
2c5b021d73e71e87715e7dbbfb57ea28 *tests/testthat/test-phis.R
7329ca8ef8bde680bafc57cd14605088 *tests/testthat/test-phit.R
eeed7136f4a12f5a4f8afdbaa126f5fc *tests/testthat/test-prop2prob.R
043c7bd9fe1da021cede3ad9f8a7c7cb *tests/testthat/test-propd.R
fee153a618e9faee5adfde6530322eb1 *tests/testthat/test-simplify.R
80fbf7a7432fe0a57dd47db34b34a1ec *tests/testthat/test-theta.R
326806a3a3fc8e71d5f62391b3e4554b *tests/testthat/test-wt.R
de5ea8db708de283072c01540f4c20dc *vignettes/a_introduction.Rmd
fa77645fd963270253ff4ca76493dc21 *vignettes/b_visualization.Rmd
c1df1951c507a95db25c2d90aa75aea0 *vignettes/c_indexing.Rmd
91bd664bd397584c83393e0678fdb677 *vignettes/d_advanced.Rmd
a0a341b6babeb16abb8b7f092d1fdaa0 *vignettes/e_differential.Rmd
85d948cd2caf933f952c47ca945044d1 *vignettes/f_questions.Rmd
