e5eb82633afab87373bada3437402f6a *DESCRIPTION
5a6b3cadd19da9dfd01c615bb07ab72f *LICENSE
d197cfa760be4dad6626d88a89a06720 *NAMESPACE
b4a849a3835811f35475e2889992133e *NEWS.md
7d044b7a0da5bacd764f2ae3b41f8f4b *R/collapse_snps_by_gene.R
7fd2d4fbff47db234f4f18a2e5124903 *R/data.R
402f322ec27bbb3e4ff72ee2b305786d *R/dup_snps_in_overlapping_genes.R
fa8b060b10e9924e39ba24bf76e85912 *R/format_inputs.R
4a60a88c68b6c30e0bad12cab095d961 *R/generate_allele_matrix.R
7f9596505762af280c96237b7c776a2d *R/preprocess_tree_and_vcf.R
2798b6b07634cbf0ed54e58750cc10eb *R/prewas.R
720bc95ce36b41bd37fee1e03569772c *R/reference_alleles.R
010fc7af2aee70081d6a9105a4753d3b *R/split_multiallelic_snps.R
5f287e6169ce7f6245990125511c5cd5 *R/validate.R
01373863f67c8c80556ae5fafd85a348 *README.md
e4fc324f664e7399a78d04d3b7e74d0f *build/vignette.rds
adcfd0f301d315e72426fba777a23f39 *data/gff.rda
16526b2808a76981fae49a1388171fbe *data/outgroup.rda
6bcf4a0f8c300883f1051e53c43d6ec6 *data/results.rda
f756693dbb9e633851963c8a9e1890ef *data/snpeff_vcf.rda
b4dc0fa899ed4cad9ac48e29eef8b572 *data/tree.rda
231ab84bffdd9d3c5ed3f40e3e0b5466 *data/vcf.rda
e38ac17b5b79c5f1b784cd01e2b41452 *inst/CITATION
69c9a6cf772c0725565079a09ea1e421 *inst/doc/getting_started_with_prewas.R
13dc837732abdd8d56e71ca39aaa4d0f *inst/doc/getting_started_with_prewas.Rmd
b992d34324ab9508069298d495b5a04d *inst/doc/getting_started_with_prewas.html
f641dcc434394cb94a363a125f8690d4 *man/gff.Rd
389ddfe6d34d03ba52c526d899a6b08f *man/outgroup.Rd
25851d3b2892f14324acd6d281608eb5 *man/prewas.Rd
fe8afced21e1656d8032494a28411575 *man/results.Rd
8ed76022da0a235b2f5c8f3ef22cf404 *man/snpeff_vcf.Rd
99fddd0ccba36d2ae29b0b9c9eb7f9b9 *man/tree.Rd
5e5be5ab7462d055e6af15fe700001fb *man/vcf.Rd
2ffa9550eb9d25e4d38304394b7576b6 *tests/testthat.R
2b0609dc55994557b05c5e81e42f299d *tests/testthat/test-collapse_snps_by_gene.R
f709ef981c7a03b6c688ac7a7a985456 *tests/testthat/test-dup_snps_in_overlapping_genes.R
14b6c942b2d9b5661c6c8e8f1f8774c4 *tests/testthat/test-format_inputs.R
101dd874b2a0e65a9ccde732a599734b *tests/testthat/test-generate_allele_matrix.R
59f9210442d60f4ba351ef6ad9afbfdd *tests/testthat/test-preprocess_tree_and_vcf.R
7ff7b537a9376fc8f5981bc7e626ec6d *tests/testthat/test-prewas.R
ff979ec931be89e2c501d13687b64081 *tests/testthat/test-reference_alleles.R
331f5215f388039af696b84befa2a067 *tests/testthat/test-split_multiallelic_snps.R
5de945ed259b274a5c13946aee2f9be7 *tests/testthat/test-validate.R
f00a9aa70c2e46e5408ed8b6d8adb8d0 *vignettes/Figure_1.png
20f632036cda214dfdb205bafd65eb8b *vignettes/Figure_S1.png
ef8085f23f7e7e29e82a1b9c8922bbfa *vignettes/Figure_S3.png
13dc837732abdd8d56e71ca39aaa4d0f *vignettes/getting_started_with_prewas.Rmd
