Package: ppiPre
Type: Package
Title: Predict Protein-Protein Interactions Based on Functional and
        Topological Similarities
Version: 1.8
Date: 2015-06-24
Author: Yue Deng, Rongjie Shao, Gang Wang and Yuanjun Sun
Maintainer: Yue Deng <anfdeng@163.com>
Description: Computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates seven features (TCSS, IntelliGO, Wang, KEGG, Jaccard, RA and AA) to predict PPIs using an SVM classifier. Some internal functions are derived from R package GOSemSim authored by Guangchuang Yu.
License: GPL-2
LazyLoad: yes
Depends: R (>= 3.1.0)
Imports: AnnotationDbi, igraph, e1071, GOSemSim, GO.db, stats, utils
Enhances: KEGG.db, org.Hs.eg.db, org.Sc.sgd.db, org.Ag.eg.db,
        org.Pt.eg.db, org.Rn.eg.db, org.Ss.eg.db, org.At.tair.db,
        org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db,
        org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db,
        org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Xl.eg.db
NeedsCompilation: no
Packaged: 2015-07-01 09:03:34 UTC; Administrator
Repository: CRAN
Date/Publication: 2015-07-01 11:43:06
