03631eeed4597a441d13ffaf171504f3 *DESCRIPTION
53f528f4b72a88a69bfb2ebeaced4179 *NAMESPACE
9db1871208758afdd9760df6ac591cb7 *NEWS
985ce00a7256462b4175102ff5ebd2d2 *R/RcppExports.R
bd095cf38405a861f2f82f3f6cac1c05 *R/calculations.R
ca3da4e83ab338a9efb185d9f29602df *R/classes_methods.R
d5d06fadb4377af084ecc2477a112395 *R/data_export.R
92eb685cbee514dd87e16fd4ae5b2ab6 *R/data_import.R
cea4bbec915258cfd81d6259b833ae8a *R/overdispersion.R
b2e60a0b1e8eb25f9acc08ea55201fac *R/pipelines.R
460a8d863aeb4834c1b01c0ddc8c577f *R/sort_isoloci.R
7979c71c6ab41157e456eb926d940a1d *build/vignette.rds
6c98bfc9c96ec05f1a4a9ae6ae9530c9 *data/Msi01genes.RData
a1e9b10b89d7f060874f93d35afbc9f0 *data/exampleRAD.RData
af782ad642be58014e4efd2d1e9f3320 *data/exampleRAD_mapping.RData
97cb4463861c9e25d37fcaec703b45f1 *inst/CITATION
45250927764067522d5990ce0e76fb5f *inst/doc/polyRADtutorial.R
755d5773f5a27070a75bb9312115a784 *inst/doc/polyRADtutorial.Rmd
661d3a54ac005b320bf8a008f61c23b8 *inst/doc/polyRADtutorial.html
90a7f3749e5a4b70066c3a481355cd33 *inst/extdata/ClareMap_HapMap.fas.txt
d06b0b7eb91371ed245c7c4810e26770 *inst/extdata/ClareMap_HapMap.hmc.txt
d1b7f7491d5395b04fe23023aa79e769 *inst/extdata/ClareMap_alignments.csv
73b36228b4ce8e6a1b423ab5700cbc62 *inst/extdata/Msi01genes.vcf
e49f11d69dc64ea8a65caa7cee9688a0 *inst/extdata/Msi01genes.vcf.bgz
39c7a280cb4ab16fa911575017387a8d *inst/extdata/Msi01genes.vcf.bgz.tbi
a78a3ce434a1bec44e264d0a75c0ee1a *inst/extdata/exampleTASSEL_SAM.txt
46df2e9b60a7c4043f49b1ab00ceeb94 *inst/extdata/example_TagTaxaDist.txt
b4b8fbdd2a8576d6cdf097580ba69f53 *inst/extdata/simulate_rad_data.R
08159e63fdb73a0d66068109a42257f6 *man/AddAlleleFreqByTaxa.Rd
e89614d835ed5006f5c28bb927f52efd *man/AddAlleleFreqHWE.Rd
1d42c393baa73570046dc7c90386917b *man/AddAlleleFreqMapping.Rd
e603e5664bed62da0aa681b048797b66 *man/AddAlleleLinkages.Rd
915185d66bc79b08579da716c3192cf0 *man/AddGenotypeLikelihood.Rd
aa4160f278dd9bef01ffa54c85a4220a *man/AddGenotypePosteriorProb.Rd
f730f5a25daed70fae1818e52f624d39 *man/AddGenotypePriorProb_ByTaxa.Rd
98cc4a2225715c8c400c00c6c7996165 *man/AddGenotypePriorProb_Even.Rd
b4cd46cb4f96da9b93489ea1457e78ff *man/AddGenotypePriorProb_HWE.Rd
e1b6014b351af4043b5b467e4a3865fc *man/AddGenotypePriorProb_Mapping2Parents.Rd
a403c888b1076b229df2085c7538f7f4 *man/AddPCA.Rd
c9188c7459c006d764d34f908745a069 *man/AddPloidyChiSq.Rd
559c095869c21d8d543c584396d31b37 *man/AddPloidyLikelihood.Rd
49a38b514b53975ee0cf5a5465bb71de *man/AddPriorTimesLikelihood.Rd
e31aaffb23304ce684d1723ebf4629eb *man/CanDoGetWeightedMeanGeno.Rd
a5cea907d699c4bf254438d04c019b5a *man/EstimateContaminationRate.Rd
7b90f8d00797825d65b8bd9c668f079e *man/ExportGAPIT.Rd
fcda3b3ef2ba7dd85366ef6ccb965f05 *man/GetLikelyGen.Rd
01f00ca76c35bad53e15605ef5d84032 *man/GetTaxa.Rd
1e40eb3dafdb323aaab70ce3270e4aef *man/GetWeightedMeanGenotypes.Rd
d52ca5fad1e3b404d17c668af8a59b65 *man/IterateHWE.Rd
6484d3bde400ccf4a385660123c584b5 *man/LocusInfo.Rd
e88b22eff85afeaca8d83b5053ecfee8 *man/MakeTasselVcfFilter.Rd
1da0300fa0c4fc661cf59f1ea7743212 *man/MergeRareHaplotypes.Rd
c92ef5c59322e75923fa857b038f508c *man/OneAllelePerMarker.Rd
45d1fa18a42fa38eb14db11fa885459d *man/PipelineMapping2Parents.Rd
176776164a6ba5fe51eeb00865e42950 *man/RADdata.Rd
76ab2cc0ebc6ca6c983cfba32deb5359 *man/SetBlankTaxa.Rd
628b676668d278301f1247299dd9103a *man/StripDown.Rd
ff8155bd1fc6d4595695a36ed6e87092 *man/SubsetByLocus.Rd
d8c6c032affb1938d06c1b9ee6e8f5de *man/SubsetByTaxon.Rd
faf5823d7562c815367f1f7d1fbbe439 *man/TestOverdispersion.Rd
304242ef6531219f0a92308626dcdc00 *man/VCF2RADdata.Rd
636cec568cace4cf8cc89c083e012d91 *man/exampleRAD.Rd
b11683de2fbd560def3b0fd5b754c8fc *man/readHMC.Rd
2896d0af9201e78d30e5622f23a34d34 *man/readStacks.Rd
ecc55acc94154b1a08db8d026daed170 *man/readTASSELGBSv2.Rd
efded63c023f5f96e23b224f268a9942 *man/readTagDigger.Rd
d60c9167604dbff4fb82ce761f07f3b3 *src/BestGenos.cpp
deaf2ce28a9753edae5640d442f4d86b *src/RcppExports.cpp
0b8c3cac4c181b52ffded1ab19a962b1 *src/ThirdDimProd.cpp
755d5773f5a27070a75bb9312115a784 *vignettes/polyRADtutorial.Rmd
a413b5b6e0270008a2e7791a91268559 *vignettes/subsetdata.py
