6c5e2b38c3c9b062bb3d1c094e87a961 *DESCRIPTION
664e9cb5f89cea30bcfe10ddf0a0d2bc *NAMESPACE
049ae16a841edd113fc4b95318106d9b *NEWS.md
d92759e35142a40605fc358e193c35f5 *R/add_predictors.R
65d8622c3b73511656ea4b3b07707ed7 *R/align_ids.R
41708e927be0535817ef19d38b5c70e9 *R/big_cbind.R
6c9a33881c6a3de5c4c450705a84379b *R/check_for_file_extension.R
a2c811426c5e0cbe6460fdfa810bcdc7 *R/coef-cv-plmm.R
278909d4234781a62a6ba4c672b5a39f *R/coef-plmm.R
df9268ddf192e0883c5fe9a2745b2f28 *R/construct_variance.R
04105229affda9b7d02cb35e46a20c7c *R/count_constant_features.R
5630be735cb85c946f44f87221010975 *R/count_cores.R
42b5d1ee04772541770a70d587e6deb1 *R/create_design.R
c2a1f0880554bbb8aff9e6ae98f556c3 *R/create_design_filebacked.R
bb1cf3ce7025f4b1f13eeddd5ddd9d19 *R/create_design_in_memory.R
2a16494919eba4c69dd26a20bdbffdad *R/create_log.R
f98cf769405d096b0b6a1d85547ab44e *R/cv-plmm.R
d0a977ae43dd84b83862e4e6ea2c646a *R/cvf.R
9d5ca5344c49b98260358a241126ac0c *R/data.R
7f235d43196bedd476bf7409f0857558 *R/eigen_K.R
ba4dba83adba3e14e7710659701f2f9e *R/estimate_eta.R
ba84056b3d7d759e52ef0dba0384cdaa *R/fbm2bm.R
fdf1548b472a97912e16840f9280968d *R/file_sans_ext.R
15c665f4bd96c0abcb33fee23edb74ff *R/find_example_data.R
521863a030d1d59c2bc4c23b096e09c6 *R/get_data.R
94d06f28b399982224ddf9ea2ff93df1 *R/get_hostname.R
53fb295cba72d74b706eb85f64e02e96 *R/impute_snp_data.R
5741838ca39fa2fd09d003c8ce2bd696 *R/index_samples.R
be9c452bb85f018c0f1beed8c1814eeb *R/index_std_X.R
8de2cb6ec673b8ad55325b0dcc7cdebf *R/lam_names.R
689b314066a4939fd2154289e54d4971 *R/log_lik.R
0a4596c1bb68199b30b848c4d1cf3405 *R/loss-plmm.R
714d837f6c96c63d99bfaface999d279 *R/name_and_count_bigsnp.R
fe5fe1e84683b79d9e3a42bcd5b8479a *R/penalties.R
376be176509d9512a35e14c7260cc7ad *R/plmm.R
c40cbe11645cc298e106bef59459697b *R/plmm_checks.R
685e83d72c82ec662d96003fa657239d *R/plmm_fit.R
301c27fb3479a9d3877ebb93c500355d *R/plmm_format.R
466463f6677a3722cc798b00e7010634 *R/plmm_prep.R
e4350db1a8c335b7073348b88d7aabc0 *R/plmmr-package.R
bc58e195626c0a7116c5bd236840e0cc *R/plot-cv-plmm.R
4e4e0a954a5dc00b1d4336e6f6d69fd1 *R/plot-plmm.R
e1a192ad5712021be379e60cc0d4ac5f *R/predict-plmm.R
7a8040e0c7e5dbb9fd03bcf098c7edfc *R/predict_within_cv.R
93dcea24a880c6eff3917604e0707faa *R/pretty_time.R
dbcf753a1ab633ef2ae0dea21d86c165 *R/print-summary-cv-plmm.R
b8622a3ef1b7ad2b53089eecb3af919e *R/print-summary-plmm.R
538f36526ac39163380d81bb9e210a98 *R/process_delim.R
9ec8a4134e10a4fe2368ffcf1ec66011 *R/process_plink.R
926f9cbae12fc6a9d3e3726c74aa8c0c *R/read_data_files.R
f8e8d1f5b8a23105fadf06b1c74e76ef *R/read_plink_files.R
c2cde1129e047e7f979bbda874019cc0 *R/relatedness_mat.R
ded6f15fbeb6fd6c731c719965a51266 *R/rotate_filebacked.R
44db413ccf526d643c1e378e9d86a4a8 *R/setup_lambda.R
fe2a9ba4b023e456453063f74e2d605a *R/standardize_filebacked.R
d3dffcc5423563a24beacf85f8648b66 *R/standardize_matrix.R
aacd5f0953718091d8de33e6aa371608 *R/subset_bigsnp.R
321939c31b197fb7b3085ee064e1ba54 *R/summary-cv-plmm.R
91fe2685b429a6aba458dafe60542c41 *R/summary-plmm.R
09e5f21f01fdabe6eefc95309cb2c031 *R/untransform.R
bbfdb19491e5a31e1765fdcd765d5377 *R/untransform_filebacked.R
d20160d7fca67f8a8e576a6c7dc3acc4 *R/untransform_in_memory.R
f48024e469da956b2a7e817611ca5d3b *README.md
b52aabe9a2757fc86742763db9dafc9b *build/partial.rdb
95988bc223d65933fef1c4cbef261282 *build/vignette.rds
1448acbfeb9d5f39cea6918bb879ae1e *data/admix.rda
891423b6cdd3c79accc2a350b9d3d6d3 *inst/CITATION
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10142d739988d4ec63424fe82a1cde92 *inst/doc/getting-started.html
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75b2a1a1660c06274256d613c5d2868f *inst/tinytest/_sign_flip_issue.R
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03c69e5433c77626a5f1c3d5b5e338b2 *inst/tinytest/test_cv.R
c6c63f2582647a888dd1e4668c4dafdf *inst/tinytest/test_plmm.R
3dbb7bbedbf278a3299a1b1cd0c13230 *man/MCP.Rd
4e0473e036fe8910ad88ed4af3292542 *man/SCAD.Rd
5457582082c1fc348a4c975473ba1c29 *man/add_predictors.Rd
2faa512b2448934de17bb71253f9ecb2 *man/admix.Rd
bd4ee3c632b1b5a74b1f6cf111f7e577 *man/align_ids.Rd
8049f66005ff698ebb55ce3f95213da8 *man/big_cbind.Rd
a039b6a71820130e3b7f5bc0d68fa812 *man/check_for_file_extension.Rd
ca56edb4125930434e73904930b60acc *man/coef.cv_plmm.Rd
f19f4d187e98d2b78e5f3b0aad4dd1d3 *man/coef.plmm.Rd
25dd468b5dfb8784225e8efb774ce58a *man/construct_variance.Rd
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385b3d0f487b80dc16f9717993c6ad40 *man/count_cores.Rd
a5920400672f342945a8556c2552f6ea *man/create_design.Rd
f551ffb8fee5e520feeb778d342b69fd *man/create_design_filebacked.Rd
61f619f68b390ee2a72cdd93bd65fda5 *man/create_design_in_memory.Rd
5fb77e601e4f6769ad3436e47c7485e1 *man/create_log.Rd
36d4234abc6ec46590954bc3dd44a199 *man/cv_plmm.Rd
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807e65db8053650b1fb3786adfe23652 *man/eigen_K.Rd
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aa74784b7adc87d15ee9c67da206f9ab *man/fbm2bm.Rd
cdc4aad8b6e2ec629ee59faf65f68628 *man/figures/plmmr_hex_sticker.png
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93585990fe154dc9b2c62bd72c14eca4 *man/impute_snp_data.Rd
149c5e310345541cbb34a123df5d1d96 *man/index_samples.Rd
3b8140cc7dc23e72e390ae0933361915 *man/index_std_X.Rd
c805313af139da2dacd2dc35dc4e9303 *man/lam_names.Rd
5ecebca591af81f00935eaacdd2fbfa2 *man/lasso.Rd
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25802ac49aaee3570da16279ff1f147a *man/name_and_count_bigsnp.Rd
61cc63f48c7d2521b7583b10d17df43b *man/plmm.Rd
c1ed43f8afa2f4faab65eeba4d841d38 *man/plmm_checks.Rd
5f1311bd1c6582c09ce4895b2ca377ef *man/plmm_fit.Rd
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b7c393b94379ae466d9096607951324e *man/plmm_loss.Rd
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2888621528e2d04b34d18440277c38aa *man/plmmr-package.Rd
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b1f78f40039bcb4f587dd2fdde0224f2 *man/plot.plmm.Rd
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fad11b3c908d6b6fdcf9e3b0cad066ba *man/predict_within_cv.Rd
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43c9fe18bde5fa5704a3dd33522d1881 *man/print.summary.cv_plmm.Rd
3a3a633681cbfc1df5808389128db2b7 *man/print.summary.plmm.Rd
8cc8983dab4c47535a2b68981876e16b *man/process_delim.Rd
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09388839ad7eb2e350376c8292f3a515 *man/read_data_files.Rd
537779ee245daf0fbc6a377f706c2173 *man/read_plink_files.Rd
6d62d143ba662f5d491faecfa7b7e976 *man/relatedness_mat.Rd
3e1bff9656015f06997d3607ff1bb294 *man/rotate_filebacked.Rd
737e985cf4b5a7b8ecacce3558144f18 *man/setup_lambda.Rd
fd83adb55779fa776f6b38408aa69aa2 *man/standardize_filebacked.Rd
dad0804f6132daf7da0cb1de59dc0c2b *man/standardize_in_memory.Rd
83601686de9dd476ffafd60c4c18dafc *man/subset_filebacked.Rd
cf98e79efab9f3e7c89166e8ac1539a8 *man/summary.cv_plmm.Rd
64fb3a0bebc6cf3f5960a8cb99c9b991 *man/summary.plmm.Rd
03e90f1c4d4cbbe71dd6189ecd570597 *man/untransform.Rd
abccfdb4d5c8107840b2caf759f1ab3b *man/untransform_filebacked.Rd
cbfa9095c6924286c1fab36d1cfa7287 *man/untransform_in_memory.Rd
b9acc33996425189aec49530f2c06456 *man/unzip_example_data.Rd
e36daf0e2bbc265932539e68a0221aca *src/Makevars
7d63cfb73145573685f48855ec3a1356 *src/big_crossprod.cpp
3f3fb14167f4be94353964cc947a6de6 *src/big_sd.cpp
d25d56e31c7ab866b8d11d98b059399e *src/big_standardize.cpp
11638bd377b58fa7af6b598db23113dc *src/defines.h
e2f03de078dcaba1051c5c54871ed6ea *src/plmm_init.c
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56cf0a1799935d05c522d4f50933c09c *src/standardize.cpp
6343d85cba11e26b0c756fe6eae12df8 *src/utilities.cpp
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35e520f0e02b16fe45add593b37a2ed5 *tests/tinytest.R
0e2f09d694708752c0bc54af6949acc7 *vignettes/getting-started.Rmd
