ee2e70883456bc0c66612d3f928ac700 *DESCRIPTION
d3dfdbc3556171bf1c598fc89c54ff2f *NAMESPACE
ae8b715413775c529437e3a11486f15f *NEWS.md
1163a8053025cf70efe09366af09b5a9 *R/Data.R
5b8b39738deb14be49833d0a27f558be *R/RcppExports.R
6766bafd430fbd9a9db2b608aab018af *R/allele_cluster.R
5ebf518ae9caf9ef4ceda7c3bf8d7486 *R/allele_genotype.R
df6cc46bc7fae1a55b713f3d5065b35a *R/piglet-package.R
60a07c91965f7826f029201906ebdd98 *R/piglet.R
7d6269d7616070d74d3ea5facb1caa47 *R/utils-pipe.R
27d5162eaa0736a9c5da1f1454f17a63 *R/utils.R
0d462c8d7fd414ae5b074aeed9e62c24 *README.md
f61db891eb928123aba4412ca322f508 *build/partial.rdb
0875eb8a097f849f02524921df38b05e *build/vignette.rds
398d41d5515cf70e0301ae59f5e8029e *data/HVGERM.rda
7ff84fd2a81c9492fded5ee6aa0bc5b4 *data/allele_cluster_table.rda
bb2151c2660fcbcd3f0fe73cd1a9381b *data/allele_threshold_table.rda
7775e8e5f51eaf2003f18f982b43de88 *data/hv_functionality.rda
d8023faefad3b819d0105900e9c75fc0 *inst/CITATION
cc026570b17c003604035d0d5c2d3040 *inst/doc/PIgLET-vignette.R
8e0aae0d2de7e8a9e1b8a534568b13d6 *inst/doc/PIgLET-vignette.Rmd
95a9ed89da2cf19bdd40f20ce4361708 *inst/doc/PIgLET-vignette.html
ed2601fd4849c037693ee484d5edccb6 *man/GermlineCluster-class.Rd
52ffd56f51c5b1ab77624394166098e9 *man/HVGERM.Rd
7e94b12fc2d8b938fd3fc763271be114 *man/alleleClusterNames.Rd
2cbb3e7a69a7cd1419be5d0fb96a787a *man/allele_cluster_table.Rd
f42eccca7c72703f094780ab24e3688b *man/allele_diff.Rd
cf29a253aa990d7e10c48fa0dbb80f02 *man/allele_diff_indices.Rd
aa0d5ed517f4ba925ca97b0fb0ab4c2e *man/allele_diff_indices_parallel.Rd
13d2a8834bd5c309c11e8c5dda13f3d0 *man/allele_diff_indices_parallel2.Rd
8527cd80a6d4097a82993d0e59b9cf69 *man/allele_diff_strings.Rd
1dced035b3e9d360a1209614d9b0332e *man/allele_threshold_table.Rd
a76d5bbd06280bb76abcc5fa2b11a4cc *man/artificialFRW1Germline.Rd
6102e54f6a77d7ad9a05453607104602 *man/assignAlleleClusters.Rd
329e48d639fad5b4fa07eccbf92047f3 *man/extractASCTable.Rd
561bd36c2bb287a275d89dc341698c87 *man/generateReferenceSet.Rd
dae9d04b0df5bd59118cc91cde637294 *man/germlineASC.Rd
63894809f6f7289d619401791d633f81 *man/hv_functionality.Rd
d331ab5255777e6da64b2d3cc87727cf *man/ighvClust.Rd
1015b90f83b93f8ed6979ec253869cc4 *man/ighvDistance.Rd
bf189b8a0fff56e09a851d2bbd6ca11f *man/inferAlleleClusters.Rd
7654ad742c88a5c459223b6491bcdd5d *man/inferGenotypeAllele.Rd
41b68fe3b3a4ca2f5dcb4a180bba6572 *man/inferGenotypeAllele_asc.Rd
c873b6c7d7696a090adf84d623a8e599 *man/insert_gaps2_vec.Rd
4d5f4ce9b2430ebe5b0d9fb44032271d *man/piglet-package.Rd
aff6d222865c63422bf4a17b2689009b *man/piglet.Rd
8f4aad003a999fae004ba9361f9a99d6 *man/pipe.Rd
179fa697e299e69bca093325665f17f0 *man/plotAlleleCluster.Rd
d85123c2319390a603a9ae4b2d10d34d *man/recentAlleleClusters.Rd
c39dc6169a8a07727b94be304508daea *man/zenodoArchive.Rd
12f9582cc1ce9a96e0e9db102a55d861 *src/RccpAlleleDiff.cpp
b1b4fafa4132b216f73eacfeb9a86d71 *src/RccpFunctions.cpp
20e44503e52da8903d7d4a1c5b21048f *src/RcppExports.cpp
8e0aae0d2de7e8a9e1b8a534568b13d6 *vignettes/PIgLET-vignette.Rmd
a88b45d131aee475c0c25c7142168f3e *vignettes/asc_alleles_table.tsv
facbde6f6909525d013568d525e457bb *vignettes/bibliography.bib
10212ab4b020826a913e3dae1364a361 *vignettes/ieee-with-url.csl
9c83901f82173957df4512e7af405c02 *vignettes/piglet_logo.png
bf3315af5423c85a5489647c6a3e889d *vignettes/piglet_logo.svg
