9a21fb4d53651b25690da9e846941926 *DESCRIPTION
06e399f1580dc8418de93ae473ab544b *NAMESPACE
7a2ccffedc323ad9f02d0058fad013f7 *R/Alphabet.R
13d32c17283616ebfc6ed0ae0ff30201 *R/AminoAcidMatrices.R
ae917a9a75e67d4f0ab32910ff816642 *R/AminoAcidSubst.R
c187a9bde2ef3ab4eadc8c4a304af0fa *R/BinarySubst.R
1727e91ff022eab9ce85e39c41f33c56 *R/BrownianInsertor.R
333a726d0e2f4f0eacbd9066dac1a6f4 *R/CodonAlphabet.R
0cbb1a854ff7c900a934345202b55651 *R/CodonModels.R
8657b4e727b44b1a6beb7c81fb687ca1 *R/ContinuousDeletor.R
2c247b42b7024a70da622cdfdd709049 *R/ContinuousInsertor.R
d6994f94aea6d6b6ab04641e545b1e48 *R/DiscreteDeletor.R
bb26d26ef684625cabef84122a414c67 *R/DiscreteInsertor.R
3b8579e7b473f008236199ad3ac27b92 *R/Event.R
9d215524e2f8e0a6e0488f6c27ff413f *R/FieldDeletor.R
2b789b3f13bc514a7c3bdcc82a026d31 *R/GeneralInDel.R
5da678f5e760e6ef4ac56e4f21b39a00 *R/GeneralSubstitution.R
021242e504c156c6e77dc4e5c855dab5 *R/NucleotideModels.R
283af7779fd9866005bdb4858798e8e6 *R/PSRoot.R
465e0ace9268b6aa72792eb99bcd372a *R/PhyloSim.R
41fed7e08543ca1a56f2ac6b98f4e3c7 *R/PopularAlphabets.R
6821e9a7ee91c7c07fea41310d758e69 *R/PopularSequences.R
7c8700a0b1380dd60aff463a44e0d3d0 *R/Process.R
34d092f1008c1bdc67fccc57dd7988c3 *R/QMatrix.R
913e2ef9a43ad3d4215754b45d12617c *R/Sequence.R
5b0b67c8a6b3b43bb264f22def9d7632 *R/Site.R
76a2af4bc4dbae1922c4d4303571b334 *data/JTT.RData
24d7bfa7cebe4eb9a231ac989f9c7e01 *data/JTT.dcmut.RData
07fbfa42042a045cdae3d6c650d9ac83 *data/LG.RData
94f5149b03df065a000769a2a9b3af7c *data/MtZoa.RData
59b641c7b3589a51907841e2bb31f334 *data/PAM.RData
0b65b4857d2a7226ce09fe2c207e6e6b *data/PAM.dcmut.RData
09a531d330f2467886ac56274f849be3 *data/WAG.RData
1c7b014c935c4de0d6f3312c0c8b905a *data/cpREV.RData
cbad00204c8aad4d43175c0f5e30b92b *data/mtArt.RData
0acdbedd1d092d976f1fec3402d011b3 *data/mtMam.RData
c5c679949de7f2932bfbda4d4d4ee92d *data/mtREV24.RData
016e6438ecac9a791ff2e3d557c7cd0d *inst/doc/Makefile
40bb8cdd9c302f4ce1511e198ada8c06 *inst/doc/PhyloSim.Rnw
19152047ccc38519309c9995953967bd *inst/doc/PhyloSim.pdf
9d0a07c747a0daeaac7247cb62fe6354 *man/000==.Alphabet.Rd
89a7c08fb68da5becf1c1679e4cb53d4 *man/000==.Process.Rd
5e8a21b5fb047dfc8332dc03a90b11b0 *man/Alphabet.Rd
217c7a8536040ac451bbd41de432e4aa *man/AminoAcidAlphabet.Rd
9d4492484019570e9321f73e9ca35e2e *man/AminoAcidSequence.Rd
40b18af3f9c27c01d2f44b168c59d382 *man/AminoAcidSubst.Rd
863efc869154cd364863e6bda97350bf *man/AnyAlphabet.Rd
80f20f9010e0d2836538afcce3337bd9 *man/BinaryAlphabet.Rd
100866a5d29e544368c9e47564f21a7e *man/BinarySequence.Rd
6bea478c43448c83b0d867514f6853d7 *man/BinarySubst.Rd
8df81bf0dba01709f7d0eae1e783bd53 *man/BrownianInsertor.Rd
d8f9d983e1c7450e47da3a3eb659f778 *man/BrownianPath.BrownianInsertor.Rd
405549eb5232f1b443977f53392324e4 *man/CodonAlphabet.Rd
e019bb194c5cd260ee460364bd131125 *man/CodonSequence.Rd
69a2ae67dff433681e782bf8eb012c79 *man/CodonUNREST.Rd
bace0f2b04c474f5cd65ed9d10dfb986 *man/ContinuousDeletor.Rd
e7b6aa815f1385205a2785fd8d269836 *man/ContinuousInsertor.Rd
50ec869c0da1190b40b147caad1529dd *man/Debug.PhyloSim.Rd
a7e83da4f75b3b7d0e4c612b66c69ab0 *man/DiscreteDeletor.Rd
91917d8b3ac724723e38a8f99b614799 *man/DiscreteInsertor.Rd
fd764f099aad7300bbdb0d5221580cb4 *man/Event.Rd
e05396d8b82f5e74d3e02861e4087e50 *man/F81.Rd
4e877cd5ba35893ff955378ba7e00a18 *man/F84.Rd
3d0403d011a1884b7b353f2f92875d46 *man/FastFieldDeletor.Rd
b997322244cbb24620b5e0cc8ceae7b9 *man/GTR.Rd
de803c8bf954c70902b92c5ac69689d9 *man/GY94.Rd
2ff5db331fd054ceb662b53ea2772ca3 *man/GeneralDeletor.Rd
b03fe2475f2cc1d6aec7e4cc60d6d7e0 *man/GeneralInDel.Rd
06e92f981a8bd399b4dda6a0bd1b7c1e *man/GeneralInsertor.Rd
4f1e1b0acf89e0797f409ce25fd72985 *man/GeneralSubstitution.Rd
042682acb64436f62ca43bbd3349a4d2 *man/HKY.Rd
a58cefc0c70ff05e8ad98679e731b516 *man/JC69.Rd
a7c06b89d49b83696b66a942cddcf036 *man/JTT.Rd
9659ab49a9a249ef41912d61bd7d0c2f *man/JTT.dcmut.Rd
11170165360f9f914e0babc00d6c0fcd *man/K80.Rd
1ca453d22032558a9bf5306b101ca9b1 *man/K81.Rd
f5dbee47b99e9c7eb1f08d3d6312d7cc *man/LG.Rd
854fe0afae9ece56d0fd6f35b6454f7d *man/Log.PhyloSim.Rd
4c7804a913be51918d8be50492b6ea20 *man/MtZoa.Rd
f3c925fc01e9086ddd88e4bee90e4667 *man/NucleotideAlphabet.Rd
2d25ec807c7518afd2d105ab5e86195b *man/NucleotideSequence.Rd
c62b17220e8a9a1127a0d0ee8c1892f9 *man/PAM.Rd
9f1109a14738c74dd4c76a061ea61671 *man/PAM.dcmut.Rd
6be795292a8ae7f28f27029f9aab88f7 *man/PSRoot.Rd
775303377f597676095c11b6086a1f66 *man/PSRootSummary.Rd
1870075d1c9899627031a910f8743623 *man/Perform.Event.Rd
8eb079ac8af2c09d51a67f49512e5228 *man/PhyloSim.Rd
0309a8685be0f6508036543939133b1b *man/Process.Rd
f87417ecb5ae7187a6bfd97bb378e6a3 *man/QMatrix.Rd
c16e10312582e0400e577a152b04cb73 *man/Scale.QMatrix.Rd
e29a2b5d7e04ec967380f37f7e67750a *man/Sequence.Rd
2a62e9aca4b277094dac58ede5f6de5f *man/Simulate.PhyloSim.Rd
14d3d90f3dfe2b96aee3cf7d79991c98 *man/Site.Rd
eaeb2a9228e328fb7074d6b94aad1055 *man/T92.Rd
674282bf84a43230546cc5aa4c4080a0 *man/TN93.Rd
b5904d64bf1937588299412a77e0b638 *man/Translate.CodonSequence.Rd
da8a634abf0ad56751157e8bae696119 *man/UNREST.Rd
22c246f935ca3a072d7797c6a9279a92 *man/Undocumented.PhyloSim.Rd
3ec7cdc09aeb1b7f06de3d3940d37a5a *man/WAG.Rd
b42f9a712dddc0feb1b873309a46f317 *man/areSynonymous.CodonAlphabet.Rd
5aec87a12fdcfa360780edcf174c96b4 *man/as.character.Alphabet.Rd
21d282be7fb3dbcc4b43ec3992f377f1 *man/as.character.Event.Rd
fa1630fd97719383da50daad99903deb *man/as.character.GeneralSubstitution.Rd
87467814a510253c128e3aac73202d4d *man/as.character.PhyloSim.Rd
86d23abd95b270b1fbd4e8ba62cc8db3 *man/as.character.Process.Rd
cf5fe523a8bc3aa58a9c0dd36688d342 *man/as.character.QMatrix.Rd
d822b0d80ebe16aaa0a55d7f65ac5804 *man/as.character.Sequence.Rd
b9c94da253c0bddc527014767f25258a *man/as.character.Site.Rd
bc036142884ffc371b9df4c1788d7c24 *man/attachHookToNode.PhyloSim.Rd
5b2c9b3fb0c60b8a47bbeea8f55de342 *man/attachProcess.Sequence.Rd
5322bb341e7e75fd2b3bcf6a7583b862 *man/attachProcess.Site.Rd
751a7b1f010a780d03e5dfc5ee18634e *man/attachSeqToNode.PhyloSim.Rd
b7d595f5f142f2c9ab75b0c6c19b5350 *man/buildFromPAML.AminoAcidSubst.Rd
eb4a31ff2f265b652adc938a437fd914 *man/checkConsistency.Alphabet.Rd
25a3e1d413ce02cfeca851f8253448f5 *man/checkConsistency.AminoAcidSubst.Rd
52f35d7c168395b1b09384173c8ee2c7 *man/checkConsistency.BinarySubst.Rd
34c72a025e744bb8406f8bb204bc835e *man/checkConsistency.BrownianInsertor.Rd
69aef5b15b12c33d1ca88d2f632e8504 *man/checkConsistency.CodonAlphabet.Rd
b245cd762c6e13846de594860fbc6186 *man/checkConsistency.CodonSequence.Rd
e612070d98ffabf6eb1c04f2a34aa853 *man/checkConsistency.CodonUNREST.Rd
dfb9cd5e1544c623d207d97e24b5dfa6 *man/checkConsistency.ContinuousDeletor.Rd
a6ea649f7ea18a229c85981b5c6939df *man/checkConsistency.ContinuousInsertor.Rd
c6648c5ec5cbac0b89d0ea540f062891 *man/checkConsistency.DiscreteDeletor.Rd
4a2aa9fe1a347190eb944d25130802ed *man/checkConsistency.DiscreteInsertor.Rd
38dd6f7160a9e4a3662b20e63eb18c53 *man/checkConsistency.Event.Rd
9dec6ba8400b279cba5a86940c64bc70 *man/checkConsistency.F81.Rd
92d67b78df1afeb78adab2f3114dea1c *man/checkConsistency.F84.Rd
705ef54759d9f3426ff8cf0292862d2c *man/checkConsistency.FastFieldDeletor.Rd
fe9ec0b889445a25ff06e6ef2ad308f4 *man/checkConsistency.GTR.Rd
ffbd1d0dcd9d8ba4ce4986c80d94da04 *man/checkConsistency.GY94.Rd
4443708b7a6e548838a6d38c43e045eb *man/checkConsistency.GeneralDeletor.Rd
831a360c0995867e0d509e676c6b55e6 *man/checkConsistency.GeneralInDel.Rd
990864eda17a114a7e8d5f49640ba3e1 *man/checkConsistency.GeneralInsertor.Rd
650e17a11415df29f3426dc7d03c0066 *man/checkConsistency.GeneralSubstitution.Rd
10ca4c502d3acaf750c2f109a976ce05 *man/checkConsistency.HKY.Rd
7e5f5b57dba615ef6cfe097e85da6646 *man/checkConsistency.JC69.Rd
cbfb2590f72e351004dfc5c6f50d0c34 *man/checkConsistency.K80.Rd
f6914324fd9f625ccf88d1357c91408a *man/checkConsistency.K81.Rd
833e2859e08121c9235ab024a9e43bf9 *man/checkConsistency.PSRoot.Rd
7e85dda4d55c97d8c97a8c78ee05f2de *man/checkConsistency.PSRootSummary.Rd
a39170bbadac4265c71ba91898b4c997 *man/checkConsistency.PhyloSim.Rd
ffc8b898409692284eba9274d2d5797e *man/checkConsistency.Process.Rd
16ee44b242ebc6554123cd2f3383a517 *man/checkConsistency.QMatrix.Rd
311d7900a5af4bb2211f755fe335321c *man/checkConsistency.Sequence.Rd
eae1efa347942010537f0e70410f9ad4 *man/checkConsistency.Site.Rd
4dc62817f14de675c83398fd2031153c *man/checkConsistency.T92.Rd
80f30da2b39dcc8d8f11edb10295bcb6 *man/checkConsistency.TN93.Rd
133ef519be7291ca93ba0d7f68eac4bc *man/checkConsistency.UNREST.Rd
17aeb6cd766ea7bf49927b9b61e70ba4 *man/clearStates.Sequence.Rd
09c45225cc638452c3edfee4c3a42036 *man/clone.GeneralSubstitution.Rd
5a62a25d918c8e887d462db14890e39e *man/clone.PSRoot.Rd
e02f745ad4956bba0f77067e9e46e8a2 *man/clone.Process.Rd
31e5b81f6c20e954d798c87eeb65e721 *man/clone.Sequence.Rd
5680d682ac7f9de342b9d7a40edef07e *man/copySubSequence.Sequence.Rd
740da473c74ff332fa6c8da903cad01a *man/cpREV.Rd
92ce45a3fb45217a0b2ab624eddaf9c9 *man/deleteSubSequence.Sequence.Rd
d74374010b008b423b998f8b8f18d83e *man/detachHookFromNode.PhyloSim.Rd
194ec11fab3024fdf085ce58cb9169d1 *man/detachProcess.Sequence.Rd
5f0d9b0cfcced88dbfcb9b7f4891846d *man/detachProcess.Site.Rd
3d9288358c99952d1731e20fcf2e1f34 *man/detachSeqFromNode.PhyloSim.Rd
dcec327e495f2cedd85a0e6d57c5ea25 *man/enableVirtual.PSRoot.Rd
a754de379379ae2b27fcddfe2322e200 *man/exportStatTree.PhyloSim.Rd
3c5119573f6e78c3927ef3d816e5ce89 *man/flagTotalRate.Site.Rd
409b7820c1e41f2cdbad12e3811e69d0 *man/generateInsert.GeneralInsertor.Rd
eb1496eb543a379eadec5d1167363a44 *man/getAcceptBy.GeneralInDel.Rd
00dfe3f85a31fcc2eebd7dbc0ec26f97 *man/getAcceptWin.GeneralInsertor.Rd
0feec5cc22986b525ba535702fdddcf1 *man/getAlignment.PhyloSim.Rd
a5ae4186a8da0d41dd8eacb9f0c0cc7c *man/getAlignmentLength.PhyloSim.Rd
3056bb2352b45a30e733e0c1f2709ee1 *man/getAlphabet.GeneralSubstitution.Rd
10625b1ebf1a31a5447e8b38dd1c2bd6 *man/getAlphabet.Process.Rd
aa96311a0f9f7d25827abf8e364ea09b *man/getAlphabet.QMatrix.Rd
7841799939faa7d06974a3005320960e *man/getAlphabet.Site.Rd
761a4a29ca6f7a3c633c692c6fc12a81 *man/getAlphabets.Sequence.Rd
1dda6ca5ca6ec76569f4480ad6b1860f *man/getAncestral.Sequence.Rd
88d34b5c7f84f87b6cb171efde9595b8 *man/getAncestral.Site.Rd
a2ffc3f4083e7325df16e149ee33c31f *man/getBaseFreqs.F81.Rd
e62488a4b26f1af683a1884cebf0fd69 *man/getBaseFreqs.F84.Rd
c007e1faceda3b95f129cf87fc6a9ea5 *man/getBaseFreqs.GTR.Rd
db44f2a7c679a540b29c78306304e046 *man/getBaseFreqs.HKY.Rd
5c054229b8c197212f64fcf1efb91d85 *man/getBaseFreqs.K80.Rd
223792dddcf25739bb2a72c32deaea06 *man/getBaseFreqs.K81.Rd
b0bee456b92fe3e265fd9c283926c5fd *man/getBaseFreqs.TN93.Rd
768fe64d8e17b7ed8f4d9df417c3ce3d *man/getBigRate.Sequence.Rd
90f49a3e63e521a61b700c205e0545a5 *man/getBranchEvents.PhyloSim.Rd
2efa69ea8e1eb63fb7a70aa5dd28f284 *man/getCodonFreqs.GY94.Rd
19e79a62d349888dc3d79a0af1e3b008 *man/getComments.PSRoot.Rd
3e48d4484b3f90175d603e452348a561 *man/getCumulativeRates.Sequence.Rd
b04e15ff55ee0283384278556d93869e *man/getCumulativeRatesFromRange.Sequence.Rd
1acde15add2b2d0b3993c3f345a25216 *man/getDeletionTolerance.Sequence.Rd
3f41b97c398230e4b7dc10a93f395214 *man/getDist.ContinuousDeletor.Rd
1bcb685e2bf5984abdbe4ed29a0bc8c2 *man/getDist.ContinuousInsertor.Rd
a315946bd05ab6980bd9d90b2363a8ca *man/getEdge.PhyloSim.Rd
4099c94a591429e9c84b4b6d58733927 *man/getEdges.PhyloSim.Rd
4dfca84aac59ae642be3c813321b16bb *man/getEquDist.GeneralSubstitution.Rd
d4b84f6828125666e9d1a978b20b06b5 *man/getEventRate.GeneralSubstitution.Rd
7d3487fe473ab8e8f8697e46e46a0be7 *man/getEventRate.QMatrix.Rd
30849568ddad6ee88d57466b2f2d17f0 *man/getEventRateAtSite.GeneralSubstitution.Rd
754c3da608bd76ff13969232e0de9884 *man/getEvents.Sequence.Rd
e9ee5f8344f60597a9581a8cf0beb75a *man/getEvents.Site.Rd
a4691dcbdb3ab50b25730847f6c0e43c *man/getEventsAtSite.FastFieldDeletor.Rd
9b83ceb5f942c289015271e8b6616b78 *man/getEventsAtSite.GY94.Rd
b12dbb2c2deccbed251dc6c3eea2ee32 *man/getEventsAtSite.GeneralDeletor.Rd
cdfc6723bdb9ab676686e58afdf887bd *man/getEventsAtSite.GeneralInsertor.Rd
6e5d94bbd11c42a2d414ebdf64e3a404 *man/getEventsAtSite.GeneralSubstitution.Rd
7d00213da4a8b1af9d9f4ada7c6628ea *man/getEventsAtSite.Process.Rd
273a9dd4d9d6bc74a13b8949401dcc0c *man/getGenerateBy.GeneralInsertor.Rd
7bfc7abdd6b92175b30b193ca42108d3 *man/getHandler.Event.Rd
59b18f79501dc5eedc2c43242b336190 *man/getId.PhyloSim.Rd
3a82b0f8f801af7378aa05b13734b7e2 *man/getId.Process.Rd
e4d0c8413776b52192b29a61670a6e1f *man/getId.QMatrix.Rd
e5b700a37bafd4ff009b73052e9e5a11 *man/getId.Sequence.Rd
024b9b305a8ed4b24f14b8e13f39fc4e *man/getInsertHook.GeneralInsertor.Rd
86c09a2f5f1e4177005518344003973e *man/getInsertionTolerance.Sequence.Rd
b41ca83e64c5041b7a0f54e957faea16 *man/getKappa.F84.Rd
4d10d6684820f4dfd99d5f1f11d626e6 *man/getKappa.GY94.Rd
a6c9150e05c5581ead242bed242b0581 *man/getLength.Sequence.Rd
430b748253b36a6aa3c307e44b6df419 *man/getLengthParam1.FastFieldDeletor.Rd
64196532ff8ee518023a33557f522ec4 *man/getLengthParam2.FastFieldDeletor.Rd
c337bc1d3125c197c1e0e84256d7519f *man/getLogFile.PhyloSim.Rd
27fd99f972ea87b602cd35e9132d8356 *man/getLogLevel.PhyloSim.Rd
47671841d5ab28a584b0eb4da36da920 *man/getMatrix.QMatrix.Rd
8caed9f619d274ae6404cbf51fd584cc *man/getMaxLength.ContinuousDeletor.Rd
6f4836bc3f2b61650ac4571a123728bc *man/getMaxLength.ContinuousInsertor.Rd
f4f0c3beadf4698ee531d60947d87c4c *man/getMethodsList.PSRoot.Rd
9ff99e5c46366a4a847b1a0415ad3b63 *man/getName.Event.Rd
bc36b4ab532966f4d0297bf15a10d116 *man/getName.PhyloSim.Rd
c2260254bfc5b01caad13fb0111d9bd1 *man/getName.Process.Rd
db81c0dda71d1b98480448ee569dff0f *man/getName.QMatrix.Rd
f48c03ceafbedb729e3a0d644231ed17 *man/getName.Sequence.Rd
78769fb80076a9508eef4d336e0212ea *man/getNedges.PhyloSim.Rd
c3430728e41bde8498ce840b251fe2d8 *man/getNodes.PhyloSim.Rd
8932659392fd81d49a9dfe24894a1e69 *man/getNtips.PhyloSim.Rd
b2f57d08f2beed768e4067d328a25b18 *man/getOmegaScalingFactor.GY94.Rd
008d2b06b5f2843e20b73cee2bec2985 *man/getOmegas.CodonSequence.Rd
15f8ec4aaaa9eb8a4fa8f60703244e87 *man/getParameterAtSite.Process.Rd
9aa4c047db7d687d731a80db9de155b6 *man/getParameterAtSites.Sequence.Rd
156bbf337f426c98d20b4d6b22f9f63c *man/getPhylo.PhyloSim.Rd
7f87f4b481af56f250264b1ec6cdd350 *man/getPosition.Event.Rd
ab50f62ceee825c92e46dbf7d6fda765 *man/getProbs.DiscreteDeletor.Rd
64092aa55d1b39e3d560f4ac7ba4bdea *man/getProbs.DiscreteInsertor.Rd
30c322835ddfecee0b78c2295219c60b *man/getProcess.Event.Rd
346ea7e611fb1e0072ce1cd64e869a07 *man/getProcess.QMatrix.Rd
aaf0bca3cece7c3b0a8c0258262e813a *man/getProcesses.Sequence.Rd
c1f3859409eba31c26200975b4601978 *man/getProcesses.Site.Rd
a8e5908b57b950559b8dc922a6fafac1 *man/getProposeBy.GeneralInDel.Rd
81d926b8b1a4bbd92933fc3118a688a6 *man/getQMatrix.GeneralSubstitution.Rd
bac33dd820e0c870aa6ebc217a195420 *man/getRate.Event.Rd
ae0170d586533b037c6d7f53e82c1c4a *man/getRate.GeneralInDel.Rd
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726ae035cea35e6ec48ca370c3ccee60 *man/setTransTable.CodonAlphabet.Rd
3e6555c7243c4d884ded6b91bb1772ad *man/setTreeLength.PhyloSim.Rd
43f18c86ca28aa5e8219a100390b07e1 *man/setType.Alphabet.Rd
f16841fc4c692943275b9dab18785865 *man/setType.BrownianInsertor.Rd
9b8b65262d31211b9063ef4d75e5c6a1 *man/setType.FastFieldDeletor.Rd
f40a88f2697ae90b943101d0829402d9 *man/setUniqueAlphabets.Sequence.Rd
7e68efa25d93982587af5e63efdd27ea *man/setUniqueProcesses.Sequence.Rd
235ea3ef6bbcaeacd67d3c503dd04d26 *man/setWriteProtected.Alphabet.Rd
1fd5c5364a5548bc85b91d6912779493 *man/setWriteProtected.Event.Rd
edb002ffcd5f32333e6cbc8969a2656a *man/setWriteProtected.Process.Rd
054519fd4d557ef448159a0f11ad3427 *man/setWriteProtected.QMatrix.Rd
7cc08db0106fe63fd50b82fef1b38328 *man/setWriteProtected.Sequence.Rd
3333365bb09e0e9cb901b913ad0e4e65 *man/stringLength.Rd
fe43ef1d5118cb86245ef91820856cda *man/stringLengthVector.Rd
d424aff3670f6e04770604519bb48435 *man/summary.Alphabet.Rd
77531397e314f773c1e7ad5463a63a75 *man/summary.AminoAcidSubst.Rd
e3c16339f7f57f075879c2ee0110c4e2 *man/summary.BinarySubst.Rd
66bc14dbf7dc0ed823c2b60458ffdbc4 *man/summary.BrownianInsertor.Rd
fb5488c374d499dec0edbfb228e33e7d *man/summary.CodonAlphabet.Rd
52e57166286de546fced30bd5e2381c2 *man/summary.ContinuousDeletor.Rd
512963caa42950b8786c8ac7cad2d0ef *man/summary.ContinuousInsertor.Rd
0f69a615c96dd1b4d00b1fc57671acd6 *man/summary.DiscreteDeletor.Rd
294673e2208b1d40a1e2d92635334c55 *man/summary.DiscreteInsertor.Rd
0049bcadada33613b6328a466299d533 *man/summary.Event.Rd
f10f566a67b99b3a0df3262ef9717f18 *man/summary.F81.Rd
38e1b92c9804952cdd2b50572386ff81 *man/summary.F84.Rd
6a892cc9e0dcb14b558d1ec80374be10 *man/summary.FastFieldDeletor.Rd
54aff3e395f1629243e8d13a8bfe2f25 *man/summary.GTR.Rd
cb1bf35d59544fb6e2174bd758e9b6d7 *man/summary.GY94.Rd
158a1cdc8d397d1235e40e07389295ce *man/summary.GeneralDeletor.Rd
207420cf986f4e4e0a0b17dc741357cb *man/summary.GeneralInDel.Rd
680230eeed7267c267add950cf9924fa *man/summary.GeneralInsertor.Rd
07397c9477de8d1abc73b5164cd8df44 *man/summary.GeneralSubstitution.Rd
e8be0f32b23c64f2214e0441e66be2a3 *man/summary.HKY.Rd
8c3bb6ea7222cc3efe3c34e21da9f9a8 *man/summary.JC69.Rd
e7f071eef18676f3fd970904e4d4d63e *man/summary.K80.Rd
0d9313456672c96009c1393d9cc96293 *man/summary.K81.Rd
7c935991e89e19b346b379ad1c73de93 *man/summary.PSRoot.Rd
7fb788d45ef06b793478bec4af788cde *man/summary.PhyloSim.Rd
78e910a39038ef4f55acee5f99a9a230 *man/summary.Process.Rd
7d46ef9e0a2a97c58a27db01deeccb03 *man/summary.QMatrix.Rd
13ccc73bdb056ae8e50a07be7c6508ea *man/summary.Sequence.Rd
295274bc9317318552981ea734855778 *man/summary.Site.Rd
dc18b7a14de71a5c72cbe4c96977d00c *man/summary.T92.Rd
ad565b4675e40be550397b3f58d555e5 *man/summary.TN93.Rd
090bf766cb5f0a021cf36f485f056eb6 *man/summary.UNREST.Rd
072aa745226a060381e95985bfeb5f59 *man/translateCodon.CodonAlphabet.Rd
e8348c0d666875fd9988e5ca009e1b3b *man/virtualAssignmentForbidden.PSRoot.Rd
