2009-05-20  Douglas Bates <bates@stat.wisc.edu>

	* [r92] DESCRIPTION, man/pedigreemm-class.Rd: New release with corrected
	  links for external S4 classes

2009-05-14  Douglas Bates <bates@stat.wisc.edu>

	* [r90] DESCRIPTION: New release
	* [r89] man/pedigreemm-class.Rd: Rather ugly fix for codoc complaint

2009-04-20  Ana Vazquez <anainesvs@gmail.com>

	* [r88] R/pedigree.R: ZStar

2009-04-16  Douglas Bates <bates@stat.wisc.edu>

	* [r87] DESCRIPTION, R/pedigree.R: Adding lmer_Zstar, new version

2009-04-09  Ana Vazquez <anainesvs@gmail.com>

	* [r86] man/pedCowsR.Rd: modification in pedCowsR.Rd

2009-03-10  Ana Vazquez <anainesvs@gmail.com>

	* [r85] man/pedCowsR.Rd: adding documentation for pedCowsR

2009-03-04  Douglas Bates <bates@stat.wisc.edu>

	* [r84] R/pedigree.R, man/pedigreemm-class.Rd: Corrections to the ranef
	  method

2009-02-26  Ana Vazquez <anainesvs@gmail.com>

	* [r83] data/pedCowsR.rda: modified name in pedCowsR to avoid conflicts

2009-02-26  Douglas Bates <bates@stat.wisc.edu>

	* [r82] man/pedSires.Rd: Remove links to the dC object
	* [r81] NAMESPACE: Export the Dmat function
	* [r80] R/pedigree.R: Remove diff markings

2009-02-25  Ana Vazquez <anainesvs@gmail.com>

	* [r79] data/pedCows.rda, data/pedCowsR.rda: adding a reduced pedCows
	  called pedCowsR
	* [r78] data/pedCows.rda: new file pedCows.rda

2009-02-25  Douglas Bates <bates@stat.wisc.edu>

	* [r77] man/pedigreemm-class.Rd, man/pedigreemm.Rd:
	* [r76] R/pedigree.R: Define ranef method for the pedigreemm class

2009-02-23  Ana Vazquez <anainesvs@gmail.com>

	* [r75] man/inbreeding.Rd: modifications in inbreeding.Rd
	* [r74] man/Dmat.Rd: adding the manual for Dmat function
	* [r73] man/Dmat.Rd: adding the manual for Dmat function
	* [r72] R/pedigree.R, data/dC.rda, data/mp.rda, data/pedCow.rda,
	  man/dC.Rd, man/mp.Rd, man/pedCow.Rd: d

2009-02-16  Ana Vazquez <anainesvs@gmail.com>

	* [r71] data/mastitis.rda, data/milk.rda, data/pedCows.rda: update of
	  file names mastitis, milk, pedCows
	* [r70] man/mastitis.Rd, man/milk.Rd, man/pedCows.Rd: update of names
	  mastitis, milk, pedCows

2009-02-10  Douglas Bates <bates@stat.wisc.edu>

	* [r69] R/pedigree.R: Switch pedigreemm to return class pedigreemm
	* [r68] R/pedigree.R: Updates for Dmat and inbreeding

2009-01-27  Ana Vazquez <anainesvs@gmail.com>

	* [r67] man/dC.Rd: dC documentation
	* [r66] man/mp.Rd: mp documentation
	* [r65] data/mp.rda: mp with id and sire as factors

2009-01-26  Douglas Bates <bates@stat.wisc.edu>

	* [r64] DESCRIPTION, NAMESPACE, R/AllClass.R, R/pedigree.R,
	  man/inbreeding.Rd, man/mp.Rd, man/pedCow.Rd, man/pedigree-class.Rd,
	  man/relfactor.Rd: Changes prior to initial release of package
	* [r63] man/pedCow.Rd, man/pedCow5.Rd: Move to correct name

2009-01-09  Douglas Bates <bates@stat.wisc.edu>

	* [r62] NAMESPACE: Export the pedigreemm function
	* [r61] R/lmerZStar.R, R/pedigree.R: Initial form of pedigreemm
	  (currently undocumented)
	* [r60] NAMESPACE: Import the Matrix package to get generics and methods

2009-01-08  Ana Vazquez <anainesvs@gmail.com>

	* [r59] data/pedCow.rda: pedCow.rda matching the mp.rda
	* [r58] data/mp.rda: mp.rda example with different identifications

2009-01-06  Douglas Bates <bates@stat.wisc.edu>

	* [r57] man/pedCow5.Rd: Add docs
	* [r56] man/sirePedigree.Rd: Add docs
	* [r55] DESCRIPTION: New release
	* [r54] R/lmerZStar.R, R/pedigree.R: Cleanup
	* [r53] data/dC.rda, data/dairyCattle.rda, data/pedSires.rda,
	  data/sirePedigree.rda, man/dC.Rd, man/dairyCattle.Rd, man/pedSires.Rd:
	  Removing large data frame and pedigree

2008-09-15  Ana Vazquez <anainesvs@gmail.com>

	* [r52] data/pedCow.rda: pedigree for milk production example
	* [r51] data/mp.rda: small example milk production
	* [r50] data/pedSires.rda: pedigree for smaller example
	* [r49] data/dC.rda: smaller example for mastitis

2008-08-29  Douglas Bates <bates@stat.wisc.edu>

	* [r48] R/AllClass.R, R/pedigree.R: Updating of pedigree functions

2008-07-15  Ana Vazquez <anainesvs@gmail.com>

	* [r47] inst/LSi1862_2dig.rda: Chol(ped) for sires of dairyCattle

2008-07-11  Ana Vazquez <anainesvs@gmail.com>

	* [r46] data/dairyCattle.rda, data/sirePedigree.rda: dairyCattle and
	  Pedigree with different labels

2008-07-11  Douglas Bates <bates@stat.wisc.edu>

	* [r44] DESCRIPTION, inst, inst/doc, inst/doc/Methods.txt: New version.
	  Add inst/doc
	* [r43] R/lmerZStar.R: Move to the doFit = FALSE argument in lmer and
	  glmer

2008-06-23  Douglas Bates <bates@stat.wisc.edu>

	* [r42] R/pedigree.R: Add the corrected version of Linv
	* [r41] man/dairyCattle.Rd: Correct the record count
	* [r40] NAMESPACE: Import the chol generic from Matrix
	* [r39] R/pedigree.R: Add a (hidden) Linv function

2008-06-18  Ana Vazquez <anainesvs@gmail.com>

	* [r38] R/lmerZStar.R: fixing bug: FL$fl[[i]]$Zt instead of
	  FL$trms[[i]]$Zt

2008-05-25  Douglas Bates <bates@stat.wisc.edu>

	* [r36] R/lmerZStar.R: Use FL$fl, not just FL after modifications to
	  factor list generator

2008-05-19  Ana Vazquez <anainesvs@gmail.com>

	* [r35] data/dairyCattle.rda: Remove repeated and incorrect observations.

2008-05-12  Douglas Bates <bates@stat.wisc.edu>

	* [r34] R/lmerZStar.R: update lmer_ZStar to new form of lmerFactorList
	  value

2008-04-22  Douglas Bates <bates@stat.wisc.edu>

        * [r32] DESCRIPTION: new release
        * [r31] NAMESPACE, R/pedigree.R, man/pedigree-class.Rd, src/pedigree.c:
          Remove chol method, which was not working anyway and would be horribly
          expensive
        * [r30] data/dairyCattle.rda, man/dairyCattle.Rd: Remove redundant
          levels of the sire factor

2008-04-08  Douglas Bates <bates@stat.wisc.edu>

        * [r29] man/dairyCattle.Rd: Update documentation

2008-04-07  Douglas Bates <bates@stat.wisc.edu>

        * [r27] NAMESPACE, R/AllClass.R, R/pedigree.R: Add class pedinbred to
          calculate and store the inbreeding
        * [r26] src/pedigree.c: cleaned up code in pedigree_inbreeding
        * [r25] DESCRIPTION, data/pedigreeSires.rda, data/sirePedigree.rda,
          man/sirePed.Rd, man/sirePedigree.Rd: Move pedigrees to name
          sirePedigree; New release
        * [r24] man/sirePed.Rd: Commit changes prior to removing

2008-04-07  Ana Vazquez <anainesvs@gmail.com>

        * [r22] data/pedigreeSires.rda: adding the pedigree of the sires.

2008-04-07  Douglas Bates <bates@stat.wisc.edu>

        * [r21] man/Holstein.Rd: Data set is no longer called Holstein
        * [r20] data/dairyCattle.Rd, man/dairyCattle.Rd: Move documentation file
          to man directory
        * [r19] data/dairyCattle.Rd: Remove horrible list of factor levels

2008-04-04  Ana Vazquez <anainesvs@gmail.com>

        * [r18] data/dairyCattle.Rd: add dairyCattle.Rd file

2008-04-03  Ana Vazquez <anainesvs@gmail.com>

        * [r17] data/dairyCattle.rda: add dairyCattle.rda and remove
          Holstein.rda
        * [r16] data/Holstein.rda, data/sirePed.rda: add dairyCattle.rda and
          remove Holstein.rda

2008-04-02  Douglas Bates <bates@stat.wisc.edu>

        * [r15] DESCRIPTION: Correct form of Maintainer: field; New release.

2008-03-26  Douglas Bates <bates@stat.wisc.edu>

        * [r13] man/Holstein.Rd, man/pedigree-class.Rd, man/sirePed.Rd:
          Documentation update
        * [r12] DESCRIPTION: New version
        * [r11] man/Holstein.Rd: Documentation for Holstein data set
        * [r10] data/Holstein.rda, data/pedigreeModif.txt, data/sirePed.rda: Add
          the sire pedigree data set
        * [r9] data/Holstein.rda, data/example.rda, data/example.txt: Move data
          set named "example" to "Holstein"
	
2008-03-25  Ana Vazquez <anainesvs@gmail.com>

        * [r7] data, data/example.rda, data/example.txt, data/pedigreeModif.txt:
          adding example data and pedigree

2008-03-17  Douglas Bates <bates@stat.wisc.edu>

        * [r6] DESCRIPTION, R/lmerZStar.R: Modifications after testing the
          package
        * [r5] R/lmerZStar.R: Initial version of lmer_Zstar; updated
          dependencies
        * [r3] README: Remove unnecessary README

2008-03-11  Douglas Bates <bates@stat.wisc.edu>

        * [r2] pkg/DESCRIPTION, pkg/NAMESPACE, pkg/R/AllClass.R,
          pkg/R/pedigree.R, pkg/man/pedigree-class.Rd, pkg/man/pedigree.Rd,
          pkg/src, pkg/src/init.c, pkg/src/pedigree.c, pkg/src/pedigree.h:
          Initial version transferred from the lme4 package

