0fa8f34bf724396b14921e5c2badf68a *DESCRIPTION
9866fe7e21a4619ef871295fc92c1d94 *NAMESPACE
fbe3530a0a3391f1fe91a22084e9e345 *R/RcppExports.R
fce5d7d08d8c3ca26a95cbfe8d74c2d6 *R/bounds4cand.R
71cf58920182c7c2d906b90fb3caa5a2 *R/candes.R
8ace6fc826c4445162a4f5a43bbc5a79 *R/checkbc.R
47948ddac862a20c296d07092d52fa73 *R/completeness.R
3a6597754371eeeb297d6c5611a392ee *R/con2df.R
0e823e5814ff033fb8b5844f3b4cbdbb *R/conttac.R
f46ddce35a0f59e723611e618f6e87f4 *R/f4cand.R
e936a3e1a826d53f0ce468635b0e3736 *R/freqlist.R
c22fbb0ed9c06273f103e3d974e4590e *R/genecont.R
5ee7f764084356953b5fc3c577f42ab2 *R/genecontALT.R
577f984367036f2ace76dbc37a3133de *R/getNe.R
3a44a59f6c311f6297ff0ebb2fcd702e *R/getcskip.R
606a863f464bb3129ec39b7c95518f97 *R/getskip.R
d9da03c746bceb137310db5adaba5d5e *R/gettraits.R
ab5b702574c62d3b29048594a9c4ad7f *R/getu.R
a2f24122671496d9b7f4dcc9eddc397f *R/haplofreq.R
8ddcb26ec40f1bed606e45a579bec8d8 *R/kinwac.R
9fe6a62842aa0a5690bdf360c7fc853a *R/lc4cand.R
337833fa16126bd9cc4a121a14d8a009 *R/makeA.R
6817580d65d48dbcf6f2ce8da0a92a24 *R/matings.R
09f0684aef18d837d139e06079efba08 *R/noffspring.R
fa5e5c6a4edf95ace6ea3e021329217d *R/onAttach.R
0b4c62f8d0205b084451f64694c41634 *R/opticomp.R
7cd8833bdf23f4731d20f9af6012bfc3 *R/opticont.R
072330784c15c1b4253350bb63ff9176 *R/pedBreedComp.R
e2276c02fb255f3d6b74351cc97fc07a *R/pedIBD.R
9f14f591eddad035864dd08158571706 *R/pedIBDatN.R
285d08b87a548df904ebcd09e6d4e0ad *R/pedIBDorM.R
8e7cf52be586ea17bf6f9ba52be277f1 *R/pedInbreeding.R
fa7a566f1bc97e2034d9b4b212f0f357 *R/pedplot.R
cef03d204b37cf438af624baa276d10b *R/plot.HaploFreq.R
57af8920235468b4cc91efa6359daa84 *R/prePed.R
86727eb52c6d7fc858733c069c0c1f43 *R/qcrc4cand.R
b0215d6cf961d8cab45e42f758c91e1b *R/read.indiv.R
64888d37ffceb62b9dd86e048b167704 *R/sampleIndiv.R
343fc1d7aae54f2031c097752fc98723 *R/segBreedComp.R
a50a074573cbef3a60ecae0ade520fc6 *R/segIBD.R
e9592d62b8d4aa8f8876ede4e0bc8bd7 *R/segIBDandN.R
5541e12d5018fe89b3a18d87e51f7c27 *R/segIBDatN.R
a52ab93b131a51117301d0e2a8b25d94 *R/segInbreeding.R
7cccbc923868b536209f389b6244904d *R/segN.R
c4a2a1d4f14ac74d774411bb6062cb69 *R/sim2dis.R
0ff7879d5b347cadf44e7358f3d6b630 *R/subPed.R
5ae28ef66444a069538076b31c31250c *R/summary.Pedig.R
8aadd86e2b7f586783ea3c46402c2c94 *R/summary.candes.R
1db9f130150c31a82725a4672e831487 *build/partial.rdb
3bf57612d59800bfa7cc3ca1fe5c923b *build/vignette.rds
7be635a1e4a2b9873ddd22958005989a *data/Cattle.rda
83d68af9df083103339c5f3a7b5bc321 *data/ExamplePed.rda
6caa76800fcda0f267da1bbde17bc0cd *data/PedigWithErrors.rda
0a1567830c72eadbebf639bdeb21cb6e *data/Phen.rda
c68bbcbc35558090d5f0fde55d240be0 *data/map.rda
c321374665011a3a002c025ea98264e9 *inst/doc/ocs-vignette.R
e2eb738e5581f002bb94287fbe8cabf2 *inst/doc/ocs-vignette.Rmd
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351ccbf2d48f05c287718d72f35613ec *inst/doc/ped-vignette.R
cb41dd71e6cbee9b84a0b50f6f4089ca *inst/doc/ped-vignette.Rmd
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9786e852ed8febe29c70403130f5b7f7 *inst/doc/seg-vignette.R
7f6fd8f625bbe6835aac968985e92d2b *inst/doc/seg-vignette.Rmd
592f0d8f461ea7e5fff1130e99d43230 *inst/doc/seg-vignette.html
0ea6e449f7675894e6252d4744ac9ec6 *inst/extdata/Chr1.phased
622c8d50e200a74f538f1cc3a25f610c *inst/extdata/Chr2.phased
175765ee352626f039232b20af49a285 *man/Cattle.Rd
c16062ca4c6d3206c4c3567aca546baa *man/Chr1.phased.Rd
ac7d45f2605d40401d4d60bb39e4c27e *man/Chr2.phased.Rd
38a3b6005da4d5bcebe2bf66e40d14ed *man/ExamplePed.Rd
8e9efc3414ffa1059101e83016cadcac *man/PedigWithErrors.Rd
3f17fe5ea848614e550be368b48099c3 *man/Phen.Rd
2f444f7c41660b254e6f13633af90d57 *man/candes.Rd
e851398e4498f1504456ee1da0b1df89 *man/completeness.Rd
bb9b51b31aeccdc15731c9a1c2d91b70 *man/conttac.Rd
299eb24197e820a14fdddf621247786f *man/freqlist.Rd
743614cd5c9f1702b9c6c1cf59e19a61 *man/genecont.Rd
9b985378f58a7d540587d1c96a23ba28 *man/haplofreq.Rd
7f752d49632105d98e139bc1d9e4e998 *man/kinwac.Rd
8e6682b917d52a78fc1e8db12cbfdf78 *man/makeA.Rd
708b70f7515e6be9b87876b2f827f356 *man/map.Rd
1e14c83f11efdf8f28626a5f0792f438 *man/matings.Rd
4b547f3acca331873e9bcdf39d95d797 *man/noffspring.Rd
2232e8c3417d03083c9d0834bb5e2e9f *man/optiSel-package.Rd
c22534a31988310cb564abfc31749512 *man/opticomp.Rd
6681e2bb0e5b8a28f6d29bcb45686179 *man/opticont.Rd
8da8e48977c6b177ad7ce9e18ab91719 *man/pedBreedComp.Rd
bcb68f3605a553fea1319fe0fcb776c2 *man/pedIBD.Rd
29930fb130a81291035ee2514c40a4eb *man/pedIBDatN.Rd
6b719aff6461bc16f6ccee31ece641e1 *man/pedIBDorM.Rd
de2b78f24df7c05b65e40e90c2edde58 *man/pedInbreeding.Rd
35a8c5948cd28754347dd39c63842a3e *man/pedplot.Rd
0cdfba2e5f41e314949c7e618d806bdf *man/plot.HaploFreq.Rd
c7ae129b5391625a860351b6077231fd *man/prePed.Rd
db4492c7b5192bb1e6e2606391774d64 *man/read.indiv.Rd
fd6fb3218028f4aa5b2ef832a31c659c *man/sampleIndiv.Rd
e2ec414d89d4bf4c0f4f343f0b18d773 *man/segBreedComp.Rd
ccd18cc5002a8a6b67a632b350fcaf13 *man/segIBD.Rd
cc82c6fbcdc0bc08ea79aff914d61305 *man/segIBDandN.Rd
03ee780c26630e5386c9fee3fa4765de *man/segIBDatN.Rd
8c8453e491606f12809b7afc1ecf5ec4 *man/segInbreeding.Rd
d035569fc3607bc9c1d3dd56c8c774d6 *man/segN.Rd
e1be277cd2b54539a442284b4b2e1654 *man/sim2dis.Rd
7b9d7fe3d5502a7f0b6aeb4217f3fefe *man/subPed.Rd
7552b9f3f4d4a2eae2f52ae8dd1a7314 *man/summary.Pedig.Rd
b4a012cf7c6ef37ef304f04cea362518 *man/summary.candes.Rd
a1e86627020c43852446a8e2c2141b3f *src/Makevars
027279118ece0dbdfc3646fbd05078ed *src/Makevars.win
d0405b876f6689461d8e76a5020d4712 *src/RcppExports.cpp
3b0f3b6fddbab44a36e9b73dfebf13bd *src/optiSel_init.c
86ae53ee0932d63b6c01f0623e05f189 *src/rcpp_completeness.cpp
6e859b6b5fe18306770077c7af762b7a *src/rcpp_genecont.cpp
7a88d7811c63dd2f314a609d35e5f4ac *src/rcpp_haplofreq.cpp
10a26a4a84b3ff18999edfb656264795 *src/rcpp_makeA.cpp
1e895e36e0f72e44286941c23a036b80 *src/rcpp_makeA_lowMem.cpp
fc35055952882daa9c35875dcd953cfc *src/rcpp_nativecont.cpp
61184c6e8e8ac936bb2eb8d4ec858224 *src/rcpp_segBreedComp.cpp
d37e857555631decb106d47da4ad980e *src/rcpp_segIBD.cpp
8f1165bbb8f2243d421c30cadcf6ec1e *src/rcpp_segIBDandN.cpp
40e59841f7758c21bfed5841fda0610d *src/rcpp_segIBDandNVersion2.cpp
7fc6f2cbf1a94c257567d2636f4838ab *src/rcpp_segInbreeding.cpp
3e44336a967f3f4c5351568bfe94d931 *src/rcpp_segN.cpp
03fc934aee18757a8bff602bb4bec201 *vignettes/HaplotypeEval/freq.Angler.Chr1.in.others.txt
21e84f70bac057ee28eb8b5cbf219705 *vignettes/HaplotypeEval/freq.Angler.Chr2.in.others.txt
5a6c57c46b2c53f4ac692b4f8934b273 *vignettes/HaplotypeEval/match.Angler.Chr1.in.others.txt
832fa1aa53d7172558e4aad81fb948b2 *vignettes/HaplotypeEval/match.Angler.Chr2.in.others.txt
e2eb738e5581f002bb94287fbe8cabf2 *vignettes/ocs-vignette.Rmd
cb41dd71e6cbee9b84a0b50f6f4089ca *vignettes/ped-vignette.Rmd
b15e67df11855355faff29b7ad31d299 *vignettes/references.bib
7f6fd8f625bbe6835aac968985e92d2b *vignettes/seg-vignette.Rmd
