8aa1ea802c64b1ecc4ccaf2f18e86c49 *DESCRIPTION
1938b31ee730dd76c3523488797f7498 *NAMESPACE
bba940e1b9ec30476acb4b58f9271d1f *R/RcppExports.R
f6c29a62da59c897fc49337e676b5684 *R/completeness.R
276e43aec6aed6e123e81a4024bae4e4 *R/conttac.R
e936a3e1a826d53f0ce468635b0e3736 *R/freqlist.R
0c9f5f7290059e0281848432dbc5db05 *R/genecont.R
5ee7f764084356953b5fc3c577f42ab2 *R/genecontALT.R
78ab0861cce358ad5de5c11af711004c *R/getNe.R
3a44a59f6c311f6297ff0ebb2fcd702e *R/getcskip.R
606a863f464bb3129ec39b7c95518f97 *R/getskip.R
3c2104247b393c77062d5ff6b633bd37 *R/haplofreq.R
adcf6116f1b140c7f7b840ea5fee2df1 *R/help.opticont.R
5b0dda3f315a0f920930dd32f6caef0d *R/help.opticont4mb.R
e48c7582d741eec28047ecc90b0db906 *R/kinlist.R
6ebf6ef9a434e43ca57ee8b981739f05 *R/kinwac.R
337833fa16126bd9cc4a121a14d8a009 *R/makeA.R
09f0684aef18d837d139e06079efba08 *R/noffspring.R
fa5e5c6a4edf95ace6ea3e021329217d *R/onAttach.R
d2c8bc8838a98a99210658c34ac358c3 *R/opticomp.R
2f2b3f7775ca0bc10fbd6ecfd5a05823 *R/opticont.R
96bec8607e6793165c623c9441ca04e0 *R/opticont4mb.R
9cbd07a914c9319d1c9f5208a68775cb *R/opticontx.R
072330784c15c1b4253350bb63ff9176 *R/pedBreedComp.R
e2276c02fb255f3d6b74351cc97fc07a *R/pedIBD.R
a76ec9091980a38b8a83ca50ad63efc7 *R/pedIBDatN.R
0acf0fecf7ad185a667a609a2805eb92 *R/pedIBDorM.R
9abe4b78368eca0dcca449896e69f4df *R/pedInbreeding.R
790fc283de6b76f0ef7285bc020fb641 *R/pedplot.R
c70707a36e808fa5a12877ce2565a0e9 *R/plot.HaploFreq.R
485615918ab2e180b0e3bee875547a1b *R/prePed.R
b0215d6cf961d8cab45e42f758c91e1b *R/read.indiv.R
ed85bef891507cda5bd6fb29fce91b7b *R/segBreedComp.R
3d4a00487e90b7f1d0a062abcaf8d891 *R/segIBD.R
a6b3ce04639e5ba9973ba94f086152c2 *R/segIBDandN.R
e80a6e00f96103dfe9b61ccc8b1c441c *R/segIBDatN.R
ba567f7e8d8ea2d9f30f14026dac4216 *R/segInbreeding.R
5e8561ceddd77f4868e31e52c45d53ef *R/segN.R
c4a2a1d4f14ac74d774411bb6062cb69 *R/sim2dis.R
0ff7879d5b347cadf44e7358f3d6b630 *R/subPed.R
5fb5dddbd4b3516b76df8e815d282b9a *R/summary.Pedig.R
7335949e539e7682b589e78e4b3c9385 *R/summary.kinwac.R
e76de1848aaea5a5dbd3c0fd3a0bb712 *R/summary.opticont.R
dbd310adc793717ca55f1adab0878f6a *build/partial.rdb
436d92d034415bcfbde903dd39958efa *build/vignette.rds
b9049578a48deb1f09ce8a0244e55a89 *data/Cattle.rda
59308e470c127a9a03a33f25dd235f48 *data/ExamplePed.rda
384a7a8d9543acbd5cc1d14547ab974b *data/Kin.rda
707e415dac17052558b45b1754e1b693 *data/PedigWithErrors.rda
715b2ce300d32bc2bec2bc00c50f44dc *data/Phen.rda
f71ef937e3cf30c85592ba81811ca203 *data/map.rda
3f2534e7855c07df41826b602c11d425 *inst/doc/ocs-vignette.R
69645d2ea78fdc41658de6d4f008bf2b *inst/doc/ocs-vignette.Rmd
cf7d4d612ae0e69ab95c029fa9eb8850 *inst/doc/ocs-vignette.html
7ceb732d6c1f4f0fbe68d5cc0f0bc457 *inst/doc/ped-vignette.R
7a4b15b53e367bcfdd2797490d48a84a *inst/doc/ped-vignette.Rmd
bbbae45a4e41371836d602ff0a8a740e *inst/doc/ped-vignette.html
43af74e5d11c60cb1155e4795e6542d2 *inst/doc/seg-vignette.R
a7bc62900326e312eb9c6303edff4165 *inst/doc/seg-vignette.Rmd
8362e6fb511ccc669082f7d4604e648f *inst/doc/seg-vignette.html
0ea6e449f7675894e6252d4744ac9ec6 *inst/extdata/Chr1.phased
622c8d50e200a74f538f1cc3a25f610c *inst/extdata/Chr2.phased
e28d8962b9fbe9c60d1a8d997253682a *man/Cattle.Rd
c16062ca4c6d3206c4c3567aca546baa *man/Chr1.phased.Rd
ac7d45f2605d40401d4d60bb39e4c27e *man/Chr2.phased.Rd
23f7c0196fa43992cd08fc3f3f394261 *man/ExamplePed.Rd
0e81cda49c52d1e8cfe7de672fd752aa *man/Kin.Rd
ab2e4ca4161e5749ac8add05bd31508a *man/PedigWithErrors.Rd
0282224ee209e04c0f690720ab7ac218 *man/Phen.Rd
8c1a7023bf911395f59dd5f807e52a7f *man/completeness.Rd
bb9b51b31aeccdc15731c9a1c2d91b70 *man/conttac.Rd
810f7966fee139d5332c9e7a46d7af8a *man/freqlist.Rd
cf81d9c7e18e0305a52103a343da58cb *man/genecont.Rd
eaff004689ee6f73f44d34b5a5181f13 *man/haplofreq.Rd
dd1f5a87789bdb67fda6470f5d229a77 *man/help.opticont.Rd
14842b0711f64080b473f86131adf849 *man/help.opticont4mb.Rd
135a6197ef812675275738eada5b126e *man/kinlist.Rd
fd7e4692b225467ff9dde5076f34c660 *man/kinwac.Rd
2f453b943c1b0d8bdeaabec38dc2d40c *man/makeA.Rd
8393928231c613a901717b1cb88080d4 *man/map.Rd
2185b92b77ae5afd317071319b72b5db *man/noffspring.Rd
b42cc5f00f5740f0caec4ffa0de919d8 *man/optiSel-package.Rd
709f030d6623d98b1e77eb8615efce5e *man/opticomp.Rd
6401fd9978c97707d9647cc7eb952478 *man/opticont.Rd
d1c13c853b886c16b5d434ea1aed5913 *man/opticont4mb.Rd
11ae313392a979d8d2458759a06bb972 *man/pedBreedComp.Rd
610a0b8f54483b1bc888821b7228e7c7 *man/pedIBD.Rd
02fd7a8c2cb8d0854911a6065a06d7a4 *man/pedIBDatN.Rd
f8f21b62a2e391cc06a30fb58bfc0d59 *man/pedIBDorM.Rd
a8a2f737df9e5f3d7368a0f1d14d04cb *man/pedInbreeding.Rd
ffcaa394388ebe87fe4542fa4d60da52 *man/pedplot.Rd
2b1d73ab543b3d29ab47af6c263ed9ef *man/plot.HaploFreq.Rd
c8a6074fd8c97beff7c71617345ad365 *man/prePed.Rd
db4492c7b5192bb1e6e2606391774d64 *man/read.indiv.Rd
8136bc0fbfba9ef3cfd03953b410b86e *man/segBreedComp.Rd
797891264b93ed253fde574a80da41fe *man/segIBD.Rd
09cbb1ba741046c280ec8c803b7088a0 *man/segIBDandN.Rd
58ff53894f0def321b8e9504d3127c83 *man/segIBDatN.Rd
5ff2be815c9a1844c1d9e0cccb6f7a37 *man/segInbreeding.Rd
137ca55059895f3cef6391f0694d7d5a *man/segN.Rd
a22d02a7c772af4c59cf9081a8d37386 *man/sim2dis.Rd
78a929196b25857841ee839ae3cd49bc *man/subPed.Rd
7552b9f3f4d4a2eae2f52ae8dd1a7314 *man/summary.Pedig.Rd
8fe923b7410055e3b24d487ef14ed58d *man/summary.kinwac.Rd
7858e0e5cb07f7e5dbcc90adc89f703c *man/summary.opticont.Rd
a1e86627020c43852446a8e2c2141b3f *src/Makevars
027279118ece0dbdfc3646fbd05078ed *src/Makevars.win
3293eb0785caddf26a8e38cf6dc43624 *src/RcppExports.cpp
200704eba556c4a87e588459e1b67506 *src/init.c
20e25bef5bd1d89aca1c141b0e91d1a3 *src/rcpp_completeness.cpp
5293435b76d9d119eae2e36f53941a62 *src/rcpp_genecont.cpp
4cd704c867b457a679c43ba8bbdf31d6 *src/rcpp_haplofreq.cpp
f299d0a5b8d23b18c1f873da23e009df *src/rcpp_makeA.cpp
1e895e36e0f72e44286941c23a036b80 *src/rcpp_makeA_lowMem.cpp
fc35055952882daa9c35875dcd953cfc *src/rcpp_nativecont.cpp
61184c6e8e8ac936bb2eb8d4ec858224 *src/rcpp_segBreedComp.cpp
2d5c522204f7c6373a8316a851e16e74 *src/rcpp_segIBD.cpp
7b3f283bb03f18b489f7b390906e3954 *src/rcpp_segIBDandN.cpp
a05d920e4de749d27a67334fd21245e1 *src/rcpp_segIBDandNVersion2.cpp
85b2bcaeb9beefcec5a729e5512b93cd *src/rcpp_segInbreeding.cpp
ed31fa6bda3c5c233c7d2b1ae034d05d *src/rcpp_segN.cpp
03fc934aee18757a8bff602bb4bec201 *vignettes/HaplotypeEval/freq.Angler.Chr1.in.others.txt
21e84f70bac057ee28eb8b5cbf219705 *vignettes/HaplotypeEval/freq.Angler.Chr2.in.others.txt
5a6c57c46b2c53f4ac692b4f8934b273 *vignettes/HaplotypeEval/match.Angler.Chr1.in.others.txt
832fa1aa53d7172558e4aad81fb948b2 *vignettes/HaplotypeEval/match.Angler.Chr2.in.others.txt
eb09b632f7fbb59efb6da270bf12d4b1 *vignettes/ocs-vignette.Rmd
7a4b15b53e367bcfdd2797490d48a84a *vignettes/ped-vignette.Rmd
b15e67df11855355faff29b7ad31d299 *vignettes/references.bib
a7bc62900326e312eb9c6303edff4165 *vignettes/seg-vignette.Rmd
