Package: opm
Version: 1.0.6
Date: 2013-11-18
Title: Tools for analysing OmniLog(R) Phenotype Microarray data
Author: Markus Goeker, with contributions by Benjamin Hofner, Lea A.I.
    Vaas, Johannes Sikorski, Nora Buddruhs and Anne Fiebig
Maintainer: Markus Goeker <markus.goeker@dsmz.de>
Depends: R (>= 2.15.0)
Imports: methods, lattice, parallel, boot, hwriter, plotrix,
        Ckmeans.1d.dp, pkgutils (>= 0.5-0), yaml (>= 2.1.7), splines,
        mgcv, grofit (>= 1.1), rjson (>= 0.2.12), nlme
Suggests: optparse, gplots, opmdata (>= 0.4-0), testthat, multcomp,
        KEGGREST, pathview, randomForest
Description: Tools for analysing OmniLog(R) and MicroStation(TM)
    phenotype microarray (PM) data as produced by the devices
    distributed by BIOLOG Inc., including plotting, aggregating
    (estimating curve parameters), comparing and discretising PM
    data, creating phylogenetic formats and reports for taxonomic
    journals, drawing the PM analysis results in biochemical
    pathway graphs optionally including genome annotations, running
    multiple comparisons of means, integrating metadata, using the
    YAML format for the storage of data and metadata, and batch
    conversion of large numbers of files.
License: GPL (>= 2)
URL: http://opm.dsmz.de/
MailingList:
        http://lists.r-forge.r-project.org/mailman/listinfo/opm-support
Collate: 'substrate-info.R' 'well-map.R' 'plate-map.R' 'imports.R'
        'package.R' 'constants.R' 'classes.R' 'auxiliary.R' 'kmeans.R'
        'naming.R' 'metadata.R' 'getter.R' 'conversion.R'
        'combination.R' 'aggregation.R' 'discretization.R' 'plotting.R'
        'io.R' 'phylogeny.R' 'data.R' 'testing.R' 'multcomp.R'
        'splinefit.R'
LazyData: yes
LazyDataCompression: bzip2
Repository: CRAN
Repository/R-Forge/Project: opm
Repository/R-Forge/Revision: 396
Repository/R-Forge/DateTimeStamp: 2013-11-18 12:33:56
Date/Publication: 2013-12-12 09:56:40
Packaged: 2013-12-12 08:28:49 UTC; ripley
NeedsCompilation: no
