b0d1356668150d8eef84e41f29b283e2 *COPYING
fd48f5eac687bead1029041739e6df60 *ChangeLog
b541401e5fa58a0f2d82b5d205e4df97 *DESCRIPTION
052ee6391049ef88fc914d3a6cd24d30 *NAMESPACE
11c0673f22d4ee9e4bb79279e41fe9d5 *NEWS
3f94b3494301a3ab6e6aa9a34aec305a *R/aggregation.R
d89c315571cf35aa7b6a88a9e166361d *R/auxiliary.R
045feeb7728380e1ff2d901dbb9c6ef2 *R/classes.R
57872491f73053332467c1e579828413 *R/combination.R
e655acc95d1d949563115da2e6f34f32 *R/constants.R
211d6cc87f8fd99a51f926a95188be96 *R/conversion.R
db5340a84b04100fdce6eef961037806 *R/data.R
b1db3f6f42d5e9292811984b71e92e5b *R/discretization.R
0079f184de8e3c3b38c202d02b69945f *R/getter.R
3bb8ee6b19da6703e2c6d20388d45388 *R/imports.R
5b8477e7862d1f329c7246a6fa31d9b9 *R/io.R
c90f67d6dc980f6d4c112393e4866ae2 *R/kmeans.R
d055dbcf149731e76298778fa90766f0 *R/metadata.R
dfc20f2e0eb275473139d537347cfedc *R/multcomp.R
05212e8bcaa3587c0916230402501f96 *R/naming.R
bce911656ee9cf0d12b8c08b826a4e14 *R/package.R
0faf42cfd17457a98110aaa292ad48f2 *R/phylogeny.R
55c0c26a3e1599edcc167c74dee855a7 *R/plate-map.R
3c14303100b95a6c3d1cb12d03f0dc15 *R/plotting.R
4bcdf0c67359de18c4d58c620bc80da6 *R/splinefit.R
c60fae18b2de135fd3c47448865ecb1e *R/substrate-info.R
4e5e40b581cc18e3b6d6d0f0bdce0b93 *R/testing.R
ce9d3fd40a83ce6f4525c09fb8e582c2 *R/well-map.R
6f4c958060832653e290e89d2acd0bd2 *data/vaas_1.rda
6bb5fd80c8c4945b575ee8b199bfc519 *data/vaas_4.rda
37fb49f3e0ed81fc0f6c2481379208aa *inst/CITATION
73b3fa3b5fd56ec512a94a5747644837 *inst/auxiliary/styles_1.css
fde67f1c720de6556a4a9985ea1f945b *inst/doc/opm.R
24ba18d6f6acab70845c238d10bd349e *inst/doc/opm.Rnw
7a663505d52e19f261fadd5061939b50 *inst/doc/opm.pdf
68be1d391f3482b58da98a86076d0edb *inst/examples/custom_PCA.R
d770a800c2564a12016c70b20dd14857 *inst/examples/multiple_plate_types.R
5adb4384a044dfbcf16ec182f5f32113 *inst/scripts/run_opm.R
42aadb989f6f4a8024dc70c29cd3d8f0 *inst/testdata/Example_1.csv.xz
eed2d157d051e6cc1db3a7cfa20bcba3 *inst/testdata/Example_2.csv.xz
1ccc9dad635ac505ba7e5f295fa6ab8d *inst/testdata/Example_3.csv.xz
0c121e7d6f8aca5e63838633cb88c4d5 *inst/testdata/Example_Ecoplate.csv.xz
8f83e31f8d2d7ef4f6849c6d34ece353 *inst/testdata/Example_ID_run.csv.xz
3f8c8eb8d7c8fc2d8b97ccb0f2564741 *inst/testdata/Example_Old_Style_1.csv.xz
ccaaf9e3fb8eb717d526760c6d5098d8 *inst/testdata/Example_Old_Style_2.csv.xz
cb2b85e33c248541e00af1d6f90d31f0 *inst/testdata/Example_Old_Style_3.csv.xz
e26e611e66d3fd0f102f32a899fef60e *inst/testdata/Example_Old_Style_Multiple.csv.xz
b587d0cf6189520ca5d8e634c2df0a72 *inst/tests/test_aggregation.R
66afbd70f9938eccb8680eb5bbfa89b3 *inst/tests/test_auxiliary.R
b241b8d26702c914c4ee816fbbea4736 *inst/tests/test_classes.R
9623d188e00fa1e69220c06e47d68560 *inst/tests/test_combination.R
6b8e50d6479eac440f2ac9864e5e922f *inst/tests/test_constants.R
84a4455a20165420ef2e02657e214ace *inst/tests/test_conversion.R
8cbbff64dc71f0e02314e9cfd80efcee *inst/tests/test_data.R
58fd6cef7b22838e6f871472fae45f67 *inst/tests/test_discretization.R
0db4f0b2df4abf5e590e6de4a22b9632 *inst/tests/test_getter.R
27a88b3b32d1c25aeefe7de8c0036e8e *inst/tests/test_imports.R
7406d0f720c8310184cecf53036b555c *inst/tests/test_io.R
073483b8ef1028883ac37666bd947fba *inst/tests/test_kmeans.R
d636a11997e8aff420710ff10c95f48a *inst/tests/test_metadata.R
2663be02baeaa18276db6df5a01639c5 *inst/tests/test_multcomp.R
9590902dba5af0b9090de290fe41d040 *inst/tests/test_naming.R
b7f905057f408de6fc1fdfe3e64be37d *inst/tests/test_package.R
cf2380433df50c52fe029be028c2d33c *inst/tests/test_phylogeny.R
3684146953ac6a9ae2fe35827ac862f1 *inst/tests/test_plate-map.R
ee29212c0a250627e428813da52c98bd *inst/tests/test_plotting.R
2ee0fdd5f100a7dd56025617b97b4219 *inst/tests/test_splinefit.R
147095e29e38d5daf5f9aeadca1d8755 *inst/tests/test_substrate-info.R
8f2346dafa8100ff1c6104ffcfbb9a32 *inst/tests/test_testing.R
3af257385590d1404736118d88ebd933 *inst/tests/test_well-map.R
d76562580f3e80140397b5e0bcd91b94 *man/AUC.Rd
f4494ef5c5c81b038854ae674d26fe43 *man/FOE.Rd
3049a2a52805fae760d55b3745d068d5 *man/MOA.Rd
f7355a4251cbbb8e6afcdef45b01bb41 *man/OPM.Rd
2cdf46d2bba3b0b3a647ac6b46e4278b *man/OPMA.Rd
9dede918e294789ff5d57f43f51ddab0 *man/OPMD.Rd
2fc2c0829abdb519b6b944f270a56277 *man/OPMS.Rd
5b80ca78d9e90aab5fdb7413971a12ba *man/OPMX.Rd
9dcb48d78bdcf8638f3741f0d236ad74 *man/Predict.matrix.psp.smooth.Rd
9f1b542f93c38ae3f59ade24c6c9ba1e *man/WMD.Rd
0eb70c9f0c75d46147f7586d431a2a4b *man/YAML_VIA_LIST.Rd
aefe8a9adea66db7ba09ad1698f967af *man/add_in_parens.Rd
5c1d51c750113330f6d4c9ce5e117e45 *man/add_parameters.Rd
33e23c41d1cd8cae59e516bf4c6b1b39 *man/aggr_settings.Rd
10a6abc60be0353776a679e917eaa3fe *man/aggregated.Rd
e593ec69ac0697b1d2e90fb3295435cd *man/anyDuplicated.Rd
9730919168883c5ce84a6c72576ec69c *man/as.data.frame.Rd
b196a1c63569d6ffc8e3d545c1302db3 *man/assert_splittable_matrix.Rd
fe3b7f39a0e6e1fcd6a69c77ddeffc8c *man/attach_attr.Rd
cffeb46c6f462ee414488ba0aa107740 *man/batch_collect.Rd
92fb9f7883e335cb0e015cc440034afb *man/batch_opm.Rd
47a583c782042f11495917fcddbb2202 *man/batch_opm_to_yaml.Rd
f66ce78d99059b3d59e1b81acd7fae4a *man/batch_process.Rd
8b48c0dd149bcaeccfd9acf60bb27aad *man/best_cutoff.Rd
75a3d38633456bfca395d69df0fb9a36 *man/best_layout.Rd
b36f2095beb30ce7b6a3c8baf24b18e7 *man/best_range.Rd
1321cf0a7ecf96722d9b05e38655c500 *man/borders.Rd
72e15f5322487b478cf795db3544427d *man/bracket.Rd
179d14dd1e86d34c6fa7978a15b03a49 *man/bracket.set.Rd
9f0e61ea47496cd94ccef1581cc932d4 *man/c.Rd
161e134214feb4a2d92afa9db9ab643c *man/calinski.Rd
79865d3625f444c142dcd27897b47f85 *man/ci_plot.Rd
9b98e791201c1a4063731f52158533f7 *man/clean_coords.Rd
21307ecc75f8a54ed71ae786e90ffa39 *man/clean_filenames.Rd
c0dc899643f5766f51ce622ea4520e40 *man/collect_template.Rd
2df5f35157b5e10fbc3dc46896203206 *man/contains.Rd
47f8045ebbfa7acf06935c20ecf7c9e8 *man/create_formula.Rd
6be0702cedf62cb44da941466f68eda8 *man/csv_data.Rd
20f21d6c6cedb7503f8848548c254743 *man/default_color_regions.Rd
0de691a673ad2b017a879d9874f539fd *man/dim.Rd
dc2757cfc2c6e2e0dfe1ab7ae99cc0d8 *man/disc_settings.Rd
9937bb0cbd41826b99fae56ee21124d6 *man/discrete.Rd
237bac921a416f9eb158d739ab0f6355 *man/discretized.Rd
56bce8c33dbcc1a2e52a0eb2e8717a2c *man/do_aggr.Rd
293990f1a7694db1398b7b2f9cf5ec49 *man/do_disc.Rd
325b4f23b73d664d93d965e80205ae5c *man/draw_ci.Rd
95cd806a09908bc1016fdc9ad2038a41 *man/duplicated.Rd
e6c33730b7744fc15f46121ff37a6379 *man/explode_dir.Rd
deabb490f8421fa11e002f1201670bf3 *man/extended_file_pattern.Rd
1fdfd82e09a34f8bae6dbd0774586734 *man/extract.Rd
081f3470d4e618d5df5d527e90750266 *man/extract_columns.Rd
651a578931da7d9e5ddec1602db1371e *man/extract_curve_params.Rd
9c41365b22acc446bd5eba340574e885 *man/fast_estimate.Rd
dc2ec6ca0ba3a8816534b31ca4efbcd6 *man/file_pattern.Rd
57eb00c849bbfb3145c6b9d7cbac617d *man/filename.Rd
9af47ce98cf26b8d7b6353b6027c7cf7 *man/find_positions.Rd
0825c2343418f964a35c6f821e140b16 *man/find_substrate.Rd
d7ea5ed7057ab8d60892fcf44510bb67 *man/fit_spline.Rd
459a755b46d2f584d8b1ef58e582b41f *man/flatten.Rd
afc6dc327d9de7d6af5aeda9827b9f3e *man/flattened_to_factor.Rd
9b3f7e479e735bb8808f2878e381549f *man/format.Rd
bc12a123a02bef8169bc624b9a5de5f5 *man/gen_iii.Rd
966a67b68590d918efa3fb72a0561ed3 *man/get_data.Rd
bb4707df7df0f6607664346dc04a1d45 *man/glob_to_regex.Rd
61c605d548a0389095271a2599c8c14f *man/guess_cex.Rd
005432eb3b50d1de977693156a3855ed *man/has_aggr.Rd
8afffc0bc6156e718d6ffddb278d92be *man/has_disc.Rd
36be5195cce65b2f18b7504b22abc132 *man/heat_map.Rd
e9b72dbe929546639ded38c48fc11947 *man/hours.Rd
509013e100e99570cd2bba55b5d26051 *man/html_args.Rd
f7afd7e0fb84d0816897d2caa2fcba49 *man/html_head.Rd
4b0c1b2a8c4213fb708772161df93bdf *man/improved_max.Rd
b47452794767a2c8f8cddac5b0ee6a6c *man/include_metadata.Rd
5ffa7bbc129dfa42d7fed6f3b0e31f2e *man/infix.k.Rd
55e3c69b8507756f5928a1f8d3af766f *man/infix.largek.Rd
e3036fd4d0085afaf5ac1b0c20e88527 *man/infix.largeq.Rd
0f7daa9433b6b0a50752eb054d4b3fae *man/infix.q.Rd
acac93ac3cee339494ab5d636a83cd51 *man/initialize.Rd
2aa533c94db06d62349328996f4acfa5 *man/insert.Rd
5e39451a407ff86edd848983ff5ea7d3 *man/is_constant.Rd
8feb011a59a46a4cac59dc36179903bc *man/is_uniform.Rd
4cb06dc2df492a1c2dda5005bc95fc64 *man/kubrick.Rd
0905b032b58216f2eccb1a8ff500e1a9 *man/length.Rd
2e9001843c4378e6adee05668931af0e *man/level_plot.Rd
7568e0c6172dd2269857d228cd1b167e *man/lines.opm_model.Rd
ad6dfb030ea4b8b9badfeeefe26f44ce *man/list2html.Rd
7b0fe3147f1af5bc84f9f6bbf91da7a6 *man/listing.Rd
d93671d6f07355bc0f5b5110eb062cab *man/main_title.Rd
60fad308a9587285c9768469cdd29c50 *man/map_grofit_names.Rd
8ec16a0dc4bb0fb9d22fd914fc8b8289 *man/map_metadata.Rd
f4b6d853adad0aff35ba622cb19f15f9 *man/map_names.Rd
3bc87b4e1d635ade74cfe45feb2856e0 *man/map_values.Rd
90bb5c94aaf988f4e7baf0502417c434 *man/map_well_names.Rd
ea31914030e280ab007c267b8dce8a81 *man/max.Rd
86d216e13e41797fb632bf1d2c2fe01b *man/md_data_frame.Rd
0c7785ea6de20b674cdfbacd59d05b35 *man/measurements.Rd
109a2f3262241803a3221c9eb4a5625f *man/merge.Rd
1a58ad4a65ac1d5b239258a9894e8d64 *man/metadata.Rd
a7edaed1e019ce892fed45d6f6768b4f *man/metadata.set.Rd
305770bd3f91862fa6ce94e6299085db *man/metadata_chars.Rd
d901f951820edeec327f839d1b517d18 *man/metadata_key.Rd
9aba9befa585fed2118d9bfce3d36b94 *man/minmax.Rd
aaed09f71fdce0bffb7507fe22129ad6 *man/negative_control.Rd
b81243429e04a9b25d9945f389c0dede *man/oapply.Rd
508c7b977e4dacc6fef0865beae01bcd *man/objects_for_testing.Rd
79bd2c9b787ec858d03fa6e0a1625c51 *man/opm.package.Rd
4414fd777d2fb4fedc3fa5da3031a938 *man/opm_files.Rd
96f5a12478e94999355453aa00e97e21 *man/opm_mcp.Rd
8e817d5ab62ed19fbb808d6eed3f4f54 *man/opm_opt.Rd
ab3651017e00cf22a1d47ba69f3e748c *man/opm_problems.Rd
c1081d391bc6e8b6d514672c2199d181 *man/opm_string.Rd
e46371ad17cc341628411f8daafa69c2 *man/opma_problems.Rd
b12e1f4c7dd31e70e5e586d5706dc747 *man/opmd_problems.Rd
cfa58fa47b1b9d154786639e33c79764 *man/opms.function.Rd
e2d7ba5e6b3ff1116865f9a9c951dbc6 *man/opms_problems.Rd
90019a35dcb7cfc2e95e76042a7c3851 *man/param_names.Rd
959403f0324256762d7f270749ca1e92 *man/parse_time.Rd
af78d74431deedf980b072a9989b4f30 *man/pe_and_ci.Rd
af3dec6d3fa1ba139438b56c0cd0ae7e *man/phylo_data.Rd
bc6a8c9a1e80416a5f53280a7144496a *man/pick_from.Rd
edf0312e0f5c72308e8bdeefa9795a05 *man/plate_type.Rd
f948432c75f21f9abe2fb01674246f64 *man/plates.Rd
d13e1cb434be49cfb2778943f8bf442f *man/plot.opm_model.Rd
0360a6413f1603a5cc8d07edeb007ea0 *man/plot_helper.Rd
16bdde95eb4116169f54d2222e154f03 *man/plus.Rd
81a5a9e63646bd8c42460adbfd0e95cb *man/position.Rd
7f16e513f57034de4a0ce82b65fd9de3 *man/predict.smooth.spline_model.Rd
b656ab4cb4fa5c60588b6b6605fd7319 *man/prepare_class_names.Rd
ae3d490ca59d030198982e6d6babe9b0 *man/prepare_k.Rd
c01352339441d20075b3410cd08fa93c *man/print.Rd
8f7e113936e90abdd846e7ccaf114bd5 *man/process_io.Rd
28ff6b1e04d45049fbdc26659f1b7a0e *man/radial_plot.Rd
77a203dc80e07cf4b21704c43862142a *man/ranging.Rd
2e036fbffceefe8e36db8326f66b5c08 *man/read_microstation_opm.Rd
95d634ca6ef622e22e6656272bf7baa6 *man/read_new_opm.Rd
dcaf01b86cdbb7cc85c4523fc5e7af52 *man/read_old_opm.Rd
2752f2c1133d467cac25414dfcc15a81 *man/read_opm.Rd
9b5fa15fd59117bde6b5e6b7a4d412f9 *man/read_opm_yaml.Rd
f9c05aa6d7d6f5fcf50b0c4a76bb41e2 *man/read_single_opm.Rd
a0ddbbeff77eb81277295253ee9ac9e4 *man/reduce_to_mode.Rd
652a1bd50b1036e7697875806385a119 *man/rep.Rd
019582f85ec4a80a233722087919e04d *man/repair_na_strings.Rd
ea4add53f5776236abca6b8a5cff5820 *man/repair_oth.Rd
73c9001b04713273c46ca2f9e75cb26f *man/rev.Rd
206325155a0f2f9e1ad3bf7b82d17a9e *man/run_kmeans.Rd
40ce33e8a765a97a1bbc6f7a59fd5792 *man/safe_labels.Rd
bbc73aaa2a120ff6c6cb0348b7f8ee46 *man/select_colors.Rd
97dc75af0c6afe568a54fe3fd5e297db *man/separate.Rd
c01fb59d75b216001edd06ed23441373 *man/seq.Rd
16db127f4a7985c805b61a82f4c29d66 *man/set_spline_options.Rd
b0c5c96f674a5d61627ffd87158386c6 *man/setup_time.Rd
ff3cb240c12594f6ae4405c55b8386d9 *man/show.Rd
5ed01f216d030b6d231c5e0c58f53c6e *man/smooth.construct.psp.smooth.spec.Rd
ad9b2f8f840ab176359b0d9e4060ee07 *man/sort.Rd
3609cb677993cd8af763fbcce82fb401 *man/source_location.Rd
72406e84a3bcc1af81961c495af0107a *man/split_files.Rd
eaeaa24b0ed9d437af3580cdca1ca350 *man/subset.Rd
ed8df6d0f3aac0b33b00b8cc0e3570e8 *man/substrate_info.Rd
bf1c9d0d70a9d36e6e56ce041d510c18 *man/summary.Rd
452633d08f863f850cd55d4de278edc4 *man/summary.splines_bootstrap.Rd
afead11fb31619f1ab37efe90e5627b1 *man/testfile_dir.Rd
6821e4fbe9ff9e4db34d84e4dd2f42a3 *man/thin_out.Rd
096c473070ad6ad12817f3d69e88e858 *man/tidy.Rd
58325322804edadc41f167d4b8ceefdf *man/to_grofit_data.Rd
46885dc3b09ed96f07b2182ef11e672f *man/to_grofit_time.Rd
e51bf9223b0f1c78cfc8776fc377ef48 *man/to_kmeans.Rd
1cf44376fd6a1bdd0a4c6f96b3a196c1 *man/to_metadata.Rd
44fbacaed1f04f4841c230739751319d *man/to_opm_list.Rd
76a8dccc4968d6d618d4cefbdb9813bb *man/to_sentence.Rd
88e381f856045b46753e11a26e8d62da *man/to_yaml.Rd
43693d59cc43ab10f521cdc6ad00bb58 *man/trim_string.Rd
c91994d5f677acf4547828ac871365ee *man/try_opms.Rd
8e40a1f314aceadb4f11faa44c5fabb0 *man/try_select_colors.Rd
8ddea384218c7a6f0543a46196043ee1 *man/unique.Rd
25dc1c88381c5c898505d71a73f1c740 *man/update.Rd
dc9d6b0279d75beb4b526a9202b8dc1e *man/update_settings_list.Rd
2d79d1dc935216a3c548df9297ab9612 *man/vaas_1.Rd
07f36ef69718ed1419ba332aafecf26e *man/vaas_4.Rd
1840cf3677f105f16d8d744192838d0b *man/well.Rd
b0ea392fc557cf931cdabab16b35d19e *man/well_index.Rd
e04af0f10232e2148be3c311b8830cf1 *man/well_to_substrate.Rd
40dcedb8d3d29498432f3348c0a45f1f *man/wells.Rd
be970291995bd2600db0e550296673f5 *man/xy_plot.Rd
47b7e467a1503cc95dca2c9f3ed1126d *tests/run-all.R
48669c4e55fe2392469dcf01641c5c06 *vignettes/jss.bst
84f542c2900480e1564a91e6f7607ae5 *vignettes/jss.cls
5f985712d397c0b0f80f25d31d7bae28 *vignettes/opm-ci.plot.I.figure.pdf
5653e635191c5a27ccb8f13a321c789c *vignettes/opm-ci.plot.II.figure.pdf
09515b7eeec9ad8c91ba580379bd04bd *vignettes/opm-heat.map.I.figure.pdf
ac21f4650b343dd17abe1046bf3a214f *vignettes/opm-level.plot.I.figure.pdf
ff88bf934dc9a6d835a774d50e65daa5 *vignettes/opm-mcp.G06.figure.pdf
216b8720e9893a6547ce6a89c2204b2c *vignettes/opm-mcp.G06.user.def.contrasts.figure.pdf
9c157b7907f97c81641e0f7ac0485b88 *vignettes/opm-norm.well.A10.figure.pdf
e35b9128896ac7c0593326493e6ba11f *vignettes/opm-plot.opm.mcp.linfct.figure.pdf
e5f4dc2ac2823eb901d4f117986188bd *vignettes/opm-plot.vaas.subset.figure.pdf
8fb559f78536c7ba315bfc36f13f9ab7 *vignettes/opm-summary.mcp.wells.figure.pdf
83c4896a1a1b419fda24fe31ca0e955b *vignettes/opm-xy.plot.II.figure.pdf
a934f4f0e63051768529f1fef08dc3e5 *vignettes/opm-xy.plot.figure.pdf
24ba18d6f6acab70845c238d10bd349e *vignettes/opm.Rnw
e67a5d8bea8f2c98a944e8cffa668046 *vignettes/opm.bib
609fa31d1a23bd64a93b5da39277df6b *vignettes/opm_fig_1.pdf
239742f92ba7034c6f94a654c07fd091 *vignettes/opm_fig_2.pdf
1fe3fb2d042bbcf10b18aff9fbccb783 *vignettes/opm_fig_3.pdf
02259d58a2a95a0280d2b5a74bfe323a *vignettes/opm_fig_4.pdf
97155bedb3c31ebbe302f2f172657e42 *vignettes/opm_fig_5.pdf
