import(methods)
import(igraph)
importFrom(coda, effectiveSize, as.mcmc, is.mcmc.list)
importFrom(grDevices, dev.off, jpeg)
importFrom(graphics, lines, plot, text)
importFrom(stats, aggregate, ar, lm, optim, pnorm, qnorm, residuals, runif, sd, var)
useDynLib(nimble, .registration = TRUE)
S3method(as.matrix, CmodelValues)
S3method(as.matrix, modelValuesBaseClass)
S3method(length, nimPointerList)
export(accessorVectorLength_setupCodeTemplate)
export(activeBindingTemplateLength1NonScalar)
export(addArg)
export(addBlockFromCppName)
export(addDistKeywordProcessors)
export(addDistList2matchFunctions)
export(addNecessarySetupCode)
export(addNewCode)
export(addNodeFxn)
export(addNodeFxn_LOOP)
export(addSamplerToSpec)
export(addSetupCodeNames)
export(addSingleModelValuesAccess)
export(addSingleVarAccess)
export(allLHSNodes_SetupTemplate)
export(allModelNodes_SetupTemplate)
export(allModelValuesVars_SetupTemplate)
export(argInfo2PointerStaticCast)
export(asCol)
export(asRow)
export(assignNumberedObject)
export(autoBlock)
export(autoBlockClass)
export(autoBlockModel)
export(autoBlockParamDefaults)
export(BUGScode)
export(BUGScontextClass)
export(BUGSdeclClass)
export(BUGSsingleContextClass)
export(buildConjugateSamplerFunctions)
export(buildMCEM)
export(buildMCMC)
export(buildModelInterface)
export(buildNeededObjects)
export(buildNimbleFxnInterface)
export(buildPF)
export(cAddBlank)
export(calcAdaptationFactor)
export(calc_dmnormAltParams)
export(calc_E_llk_gen)
export(calcNodes)
export(calcNodesMV)
export(calculate)
export(calculateDiff)
export(calculateDiff_keywordInfo)
export(calculate_keywordInfo)
export(callToPackVPtrs)
export(cc_createStructureExpr)
export(cCopyVariableRows)
export(cc_structureExprName)
export(cc_vectorizedComponentCheck)
export(cGetNRow)
export(character2index)
export(checkInterrupt)
export(checkNimbleFunctionListCpp)
export(checkNimbleOrRfunctionNames)
export(checkRSHonlyInit)
export(cloglog)
export(Cmatrix2mvOneVar)
export(CmodelValues)
export(CmultiNimbleFunctionClass)
export(code2Name_fromArgList)
export(codeProcessIfThenElse)
export(codeSubstitute)
export(combineIndices2Flat)
export(combine_MCMC_comparison_results)
export(compareConjugacyLists)
export(compareMCMCs)
export(compileNimble)
export(configureMCMC)
export(conjugacyClass)
export(conjugacyRelationshipsClass)
export(conjugacyRelationshipsInputList)
export(conjugacyRelationshipsObject)
export(conjugateSamplerDefinitions)
export(copierVector)
export(copierVector_setupCodeTemplate)
export(copyFromRobject)
export(copyFromRobjectViaActiveBindings)
export(cppBUGSmodelClass)
export(cppClassDef)
export(cppOptimObject)
export(createDefault_isDataObj)
export(createDFfromABlist)
export(createDynamicConjugateSamplerName)
export(createNamedObjectsFromList)
export(cube)
export(dcat)
export(dconstraint)
export(ddirch)
export(d_dist_keywordInfo)
export(decide)
export(decideAndJump)
export(declare)
export(dependentClass)
export(deregisterDistributions)
export(determineNdimFromOneCase)
export(determineNdimsFromNfproc)
export(determineNodeIndexSizes)
export(dexp_nimble)
export(d_exp_nimble_keywordInfo)
export(d_gamma_keywordInfo)
export(dimOrLength)
export(dinterval)
export(distfun)
export(distributionsInputList)
export(dmnorm_chol)
export(dmulti)
export(dollarSign_keywordInfo)
export(doubleBracket_keywordInfo)
export(dt_nonstandard)
export(dwish_chol)
export(dynamicConjugateSamplerAdd)
export(dynamicConjugateSamplerDefinitionsEnv)
export(dynamicConjugateSamplerExists)
export(dynamicConjugateSamplerFunctionsEnv)
export(dynamicConjugateSamplerGet)
export(dynamicConjugateSamplerWrite)
export(evalBracketArgs)
export(evalBracketArgsKnownBracket)
export(existsFunctionEnvVar)
export(expandIndexSet4sapply)
export(expit)
export(extractFlatIndices_wVarInfo)
export(funName2OptimFunName)
export(gd_allNeighbors)
export(gd_getDependencies_IDs)
export(genIndexVarValues_recurse)
export(genLogProbNodeExprAndReplacements)
export(genReplacementsAndCodeRecurse)
export(getAdditonalArgsListForOptim)
export(getArgInfoFromNFSym)
export(getArgsFromOptimCallForTargetFun)
export(getBoolValue)
export(getBUGSexampleDir)
export(getCallText)
export(getCharacterValue)
export(getCharacterVectorValue)
export(getDefinition)
export(getDependencyPaths)
export(getDistribution)
export(getDoubleValue)
export(getFunctionEnvVar)
export(getFxnVectorPtr)
export(getIntValue)
export(getLoadingNamespace)
export(getLogProb)
export(getLogProb_keywordInfo)
export(getLogProbNodes)
export(getLogProbNodesMV)
export(getModelAccessorValues)
export(getModelValuesAccessorValues)
export(getModelValuesSpec)
export(getMVName)
export(getMVptr)
export(getNamedObjected)
export(getNimbleFunctionEnvironment)
export(getNimbleOption)
export(getNimbleProject)
export(getNimbleTypes)
export(getNimValues)
export(getNodeFxnPtrs)
export(getNumberedObject)
export(getParam)
export(getParam_keywordInfo)
export(getPosteriorDensityFromConjSampler)
export(getPosteriorDensityFromConjSampler_virtual)
export(getSetCharacter)
export(getSetCharacterVector)
export(getSetDoubleScalar)
export(getSetIntegerScalar)
export(getSetLogicalScalar)
export(getSetModelValues)
export(getSetModelValuesPtr)
export(getSetModelVarPtr)
export(getSetNimbleFunction)
export(getSetNimPtrList)
export(getSetNumericVector)
export(getsize)
export(getSize_NumberedObjects)
export(getSymbolicParentNodes)
export(getSymbolicParentNodesRecurse)
export(getValues)
export(getVarAndIndices)
export(handleScaleAndRateForExpNimble)
export(handleScaleAndRateForGamma)
export(icloglog)
export(ilogit)
export(initializeModel)
export(inner_populateNodeFxnVec)
export(inprod)
export(insertSingleIndexBrackets)
export(inverse)
export(iprobit)
export(is.blank)
export(is.Cnf)
export(isCodeArgBlank)
export(is.indexed)
export(isModelValuesSpec)
export(is.nf)
export(is.nfGenerator)
export(isSetupCodeGenerated)
export(isSymbolType)
export(isValid)
export(is.vectorized)
export(keywordInfoClass)
export(keywordList)
export(keywordListModelMemberFuns)
export(keywordOnlyMatchDistList)
export(labelFunctionCreator)
export(linkInverses)
export(logdet)
export(logfact)
export(loggam)
export(logit)
export(makeBUGSclassFields)
export(MakeCustomModelClass)
export(makeCustomModelValuesClass)
export(makeDeclareSizeField)
export(makeDSLCallforVoidPtr_fromArgInfAndCall)
export(makeFixedParameterCallCodeForOptim)
export(makefnScaleLine)
export(makeGetCodeFromAccessorVector)
export(makeIndexedVariable)
export(makeIndexNamePieces)
export(makeMapInfoFromAccessorVector)
export(makeMapInfoFromAccessorVectorFaster)
export(make_MCMC_comparison_pages)
export(makeMV_GID_Map)
export(makeNewParsCharCopyLine)
export(makeNewSpecFromOldSpec)
export(makeOptimFunctionCallLine)
export(makeParamInfo)
export(makeSetCodeFromAccessorVector)
export(makeStaticCastingChunk)
export(makeVoidPointerName_fromObjName)
export(map_SetupTemplate)
export(matchAndFill.call)
export(matchDistList)
export(matchFunctions)
export(matchKeywordCode)
export(matchKeywordCodeMemberFun)
export(matchKeywords_recurse)
export(matchModelMemberFunctions)
export(matrix2mv)
export(MCMCspec)
export(MCMCsuite)
export(MCMCsuiteClass)
export(modelDefClass)
export(modelDefInfoClass)
export(modelMemberFun_keywordInfo)
export(modelValues)
export(modelValuesAccessorVector)
export(modelValuesAccessorVector_setupCodeTemplate)
export(modelValuesSpec)
export(modelVariableAccessorVector)
export(modelVariableAccessorVector_setupCodeTemplate)
export(mvInfoClass)
export(ndf_createStochCalculateTrunc)
export(ndf_createStochSimulateTrunc)
export(ndf_generateGetParamSwitchFunction)
export(newManyModelValuesAccess)
export(newManyVarAccess)
export(newNodeFxnVec)
export(newNumberedObjects)
export(newObjElementPtr)
export(newSpacesFunction)
export(nfCompilationInfoClass)
export(nfGetDefVar)
export(nf_getGeneratorFunction)
export(nf_getInstances)
export(nf_getMethodList)
export(nf_getRefClassObject)
export(nf_getSetupOutputNames)
export(nfMethod)
export(nfProcessing)
export(nfVar)
export(`nfVar<-`)
export(nimArray)
export(nimbleCode)
export(nimbleFunction)
export(nimbleFunctionList)
export(nimbleFunctionVirtual)
export(nimbleModel)
export(nimbleOptions)
export(nimbleOrRfunctionNames)
export(nimbleProjectClass)
export(nimbleUniqueID)
export(nimCopy)
export(nimCopy_keywordInfo)
export(nimDim)
export(nimEquals)
export(nimOptim)
export(nimOptim_keywordInfo)
export(nimPointerList)
export(nimPrint)
export(nimStep)
export(nimStop)
export(nimSwitch)
export(nimVector)
export(nl_addIndicesToVariables)
export(nl_aggregateConsecutiveBlocks)
export(nl_checkNodeNamesInModel)
export(nl_checkVarNamesInModel)
export(nl_createVarsAndFlatIndexRanges)
export(nl_determineFlatIndex)
export(nl_expandNodeIndex)
export(nl_expandNodeIndexExpr)
export(nl_expandNodeNames)
export(nl_getVarNameFromNodeName)
export(nl_nodeVectorReadyNodes)
export(nl_removeNodeNamesNotInSymbolTable)
export(nl_vectorizedExpandNodeIndex)
export(nl_vectorizedExpandNodeIndexExprs)
export(node_determ)
export(nodeFunction)
export(nodeFunctionVector)
export(nodeFunctionVector_SetupTemplate)
export(nodeInit_virtual)
export(numberedModelValuesAccessors)
export(numberedModelVariableAccessors)
export(numberedObjects)
export(OptimFun_argDefs)
export(OptimReadyFunction)
export(optimReadyFun_setupCodeTemplate)
export(paramInfo_SetupTemplate)
export(parseEvalNumeric)
export(pexp_nimble)
export(pfStep)
export(pfStepVirtual)
export(phi)
export(plotABS)
export(pointAt)
export(populateCopierVector)
export(populateManyModelValuesMapAccess)
export(populateManyModelVarMapAccess)
export(populateNodeFxnVec)
export(populateNodeFxnVec_OLD)
export(posteriorClass)
export(pow)
export(pq_exp_nimble_keywordInfo)
export(pq_gamma_keywordInfo)
export(printMinTimeABS)
export(probit)
export(processKeyword)
export(processKeywordCodeMemberFun)
export(processKeywords_recurse)
export(processMonitorNames)
export(pt_nonstandard)
export(qexp_nimble)
export(qp_dist_keywordInfo)
export(qt_nonstandard)
export(rankSample)
export(rcat)
export(RCfunInfoClass)
export(rconstraint)
export(rdirch)
export(readBUGSmodel)
export(reduceDF)
export(registerDistributions)
export(removeIndexing)
export(removeLogProbName)
export(removeNodeFxn)
export(removeSingleModelValuesAccess)
export(removeSingleVarAccess)
export(removeVariableFromEnv)
export(rename_MCMC_comparison_method)
export(reshape_comparison_results)
export(resize)
export(resizeNodeFxnVec)
export(resize_NumberedObjects)
export(rexp_nimble)
export(rexp_nimble_keywordInfo)
export(rgamma_keywordInfo)
export(rinterval)
export(RMakeCustomModelClass)
export(Rmatrix2mvOneVar)
export(rmnorm_chol)
export(rmulti)
export(Rname2CppName)
export(rt_nonstandard)
export(rwish_chol)
export(sampler_BASE)
export(sampler_conjugate_dbeta)
export(sampler_conjugate_ddirch)
export(sampler_conjugate_dgamma)
export(sampler_conjugate_dmnorm)
export(sampler_conjugate_dnorm)
export(sampler_conjugate_dwish)
export(sampler_crossLevel)
export(sampler_end)
export(sampler_ess)
export(sampler_RW)
export(sampler_RW_block)
export(sampler_RW_llFunction)
export(sampler_RW_log)
export(sampler_slice)
export(samplerSpec)
export(setAndCalculate)
export(setAndCalculateDiff)
export(setAndCalculateOne)
export(setBoolValue)
export(setCharacterValue)
export(setCharacterVectorValue)
export(setDoublePtrFromSinglePtr)
export(setDoubleValue)
export(setIntValue)
export(setNimValues)
export(setOnePtrVectorOfPtrs)
export(setPtrVectorOfPtrs)
export(setSize)
export(setupCodeTemplateClass)
export(setValues)
export(simNodes)
export(simNodesMV)
export(simulate)
export(simulate_keywordInfo)
export(singleBracket_keywordInfo)
export(singleModelIndexAccess_SetupTemplate)
export(singleModelValuesAccess)
export(singleModelValuesAccessor_SetupTemplate)
export(singleVarAccess)
export(singleVarAccess_SetupTemplate)
export(stochNodeInit)
export(stripArgs)
export(symTypeFromSymTab)
export(testBUGSmodel)
export(updateMCMCcomparisonWithHighOrderESS)
export(valueInCompiledNimbleFunction)
export(values)
export(`values<-`)
export(valuesAccessorVector)
export(values_keywordInfo)
export(varAndIndices2flatIndex)
export(varAndIndices2mapParts)
export(vectorIndex_2_flat)
export(virtualNFprocessing)
export(virtualNodeFunctionDefinitions)
export(whyInvalid)
exportClasses(CmodelBaseClass,CnimbleFunctionBase,codeBlockClass,modelBaseClass,modelValuesBaseClass,nimbleFunctionBase,RmodelBaseClass,singleModelValuesAccessClass,singleVarAccessClass)