44e4783f8469b66b6ab25efd010d77bd *DESCRIPTION
2fd87f4918006e4b985b6a9f531f8701 *NAMESPACE
c1d005456cbade5aefec9b7090ddc393 *NEWS.md
59ee2c8fdf0f6eb328791b08b2ec97a0 *R/CollapseReplicates.R
51a1095ea0830816ebc8031ee0de50bf *R/DiffGenes.R
8dd8fa6ff69b545ccc130dd60ae9f130 *R/EarlyConservationTest.R
fa0b9470d9eb2a3fe6962c3e88228a7f *R/EnrichmentTest.R
906f3d75f284594af7c03189da0541dc *R/Expressed.R
eb77f240ebaa261d19e75fe84861e677 *R/FlatLineTest.R
5b8c805649839830c299dfe96f497dd7 *R/GroupDiffs.R
c0969390495523f1abc9e2637242365e *R/MatchMap.R
7fd0506d9f61d3c7f92e17a521352eca *R/PlotBarRE.R
731ccae03e153c9721bd3b3cd6b2f06a *R/PlotCIRatio.R
4ce25b451fa8e61770b587d921f2a570 *R/PlotCategoryExpr.R
9799b94202f252c32d2ad8392f033fbd *R/PlotContribution.R
86b66f26093a0ff42d12bd3b02053407 *R/PlotCorrelation.R
82914da1a3e9dc51f28322de84810442 *R/PlotDistribution.R
26fa995a43869f9e31ea43c8250efe40 *R/PlotEnrichment.R
2513b9eef968e03840d9633c141df648 *R/PlotGeneSet.R
e16bd561da0c84a438f284db207332b9 *R/PlotGroupDiffs.R
2efad4c1b04ff5f1dda2ff96b272ed82 *R/PlotMeans.R
0ac545401c8d111235cf32e5af792e91 *R/PlotMedians.R
9e79b405a0f81f8b5fbad633136d008c *R/PlotPattern.R
39a59df7c57da470dd626dc96b609315 *R/PlotRE.R
b3147cdecb2f5010e71e34ad699caa9a *R/PlotReplicateQuality.R
77c667c352c91cd97db20bfb58d0f657 *R/PlotSelectedAgeDistr.R
e54b5ca344966962eb0a68f71ff395a6 *R/PlotSignature.R
853e43c45b4d2b06498de109f83c6717 *R/PlotVars.R
c773fa287a44b943bd616705e05eaf77 *R/RcppExports.R
83c35a310459819ab2217a359cd26d57 *R/ReductiveHourglassTest.R
4ec524835b7a0a97af0193d5a627bd52 *R/SelectGeneSet.R
4d9f9242f80e31b29972b3ce7db68ed2 *R/TAI.R
0c4363c87a0d66a08e598cee2435dcb1 *R/TDI.R
2da46067d985292087816bf62ca19163 *R/TPI.R
6073e1a4c7fab39822b5d475467eb494 *R/age.apply.R
5ebe2c4c46f00e4abfec202b72b795ab *R/base.R
d1dda0f9bc93e36e4e3d7a2f9d3240c3 *R/bootMatrix.R
2406e4060f3eeb2e1fb03b64d371a153 *R/combinatorialSignificance.R
22a292a414a723b7a105d69d4adbfa9f *R/custom.myTAI.cols.R
a8b885d42cf199ea8da7f98bfa6636d6 *R/datasets.R
133ea0d3f0b607620a8356d52e004f19 *R/ecScore.R
f826b1278b8c7e3bd2ca520306091bc3 *R/geom.mean.R
3752e753f74d1cc7a148f5d34e62d462 *R/harm.mean.R
00a21fa87dbc815e9c46e39204c4ce5c *R/is.ExpressionSet.R
86829974c13bbc37eda99827e7a69ca5 *R/omitMatrix.R
a7a55c872c7fb75436a14b336c0f4bdb *R/pMatrix.R
9c817b0bbfd9407ac991f42289bac1af *R/pStrata.R
c85a0b5b758891a0b7b22d651e72ee5a *R/pTAI.R
13084fd9d8b5fe6939daf0a0f42da3c3 *R/pTDI.R
b97b60780c222a7803157b2faf22b964 *R/rel_exp.R
a550fccfa1a503a682caca3dfd94bc0b *R/rhScore.R
d82d02095333016c2697ffd2447c312b *R/taxid.R
e5bf2dfe3673da1fe1d56c7775480e6e *R/taxonomy.R
3bb31bae1658b8971948acfa603cf100 *R/tf.R
e8721ba3976bafdc00b996dbe07fa7cd *README.md
3c7f2a87994d56dcf11b29d13c09339f *build/vignette.rds
40cdca4ecf918521bc1c1f01e90ecdd9 *data/DivergenceExpressionSetExample.rda
42454c557a67403f4a652f2b8142af72 *data/PhyloExpressionSetExample.rda
c5c26b2a2802567de070fe4d142f536c *data/datalist
de5cb73410dd7a203ee9aa1e5066f188 *inst/CITATION
5e40ceabdb2f1263eab40d77053558df *inst/doc/Advanced.R
c8aca12ed766cc5c03fdea1eb0acd159 *inst/doc/Advanced.Rmd
241996296f528e164ff617584b902b3e *inst/doc/Advanced.html
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218eb46ef3c2c12469bbb7fa6b937352 *inst/doc/Introduction.Rmd
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3fe9de1a3cefb7b553b5755f6212f1e4 *inst/doc/Taxonomy.R
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1245ed778ae0b88281c9aca1d6d33c4a *inst/doc/Taxonomy.html
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09e5cd3edb2dc041fd4436411bcba8f4 *man/CombinatorialSignificance.Rd
da40a7d65399223fc6fee3f89ef5a882 *man/DiffGenes.Rd
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bcded7d13ba05dd5401a0b9f52a58434 *man/EarlyConservationTest.Rd
b4be46407c062b10b557b13c7e0d976d *man/EnrichmentTest.Rd
336c721b0e440c79773917d2c624f899 *man/Expressed.Rd
53542f98449d3e4ca1dbea2d4efbf8ae *man/FlatLineTest.Rd
42ffeb6f21e2c8af058c2bfda529b957 *man/GroupDiffs.Rd
1e67620cf74a9c68a51d9a2af339d28b *man/MatchMap.Rd
fdd46db9c1cd8b8e5d6e66927656e762 *man/PhyloExpressionSetExample.Rd
1ef54fb50f24cf8afa8c3d26cedf4041 *man/PlotBarRE.Rd
6bb949f4da6711044b3a82c30be6f4b2 *man/PlotCIRatio.Rd
0af9931209ee67468431be38d7138ddc *man/PlotCategoryExpr.Rd
fcb41130f35ffb9adfaa941b0349d47a *man/PlotContribution.Rd
d1ba5faf942e58ebe54985ef71d6f05b *man/PlotCorrelation.Rd
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60737dc10188bcc4b3c01a9744b00202 *man/PlotEnrichment.Rd
cebcb6537fafb4815bf8871f6b328246 *man/PlotGeneSet.Rd
8f3ba195032660e0ba1e5c2c48aca088 *man/PlotGroupDiffs.Rd
0e9835a0666117ec6dc14687d715139f *man/PlotMeans.Rd
e37dc73eaf719afaae4b2f6cb67e3871 *man/PlotMedians.Rd
e7f49341caace841a4db40703251639a *man/PlotPattern.Rd
0f9cd98c3548b931a85808c6e5b235c1 *man/PlotRE.Rd
9c866e166bbf3c29f62e774b788d3484 *man/PlotReplicateQuality.Rd
532fc693db74e9e76d124a6abd0bfc5c *man/PlotSelectedAgeDistr.Rd
15c9315366209999e6e0921ed703300f *man/PlotSignature.Rd
537179f34a5bc2a069a5f66b669bcae4 *man/PlotVars.Rd
270836b0e59e41ffd5bf52c09dcb048c *man/RE.Rd
d926b962829b47c8d0fda102e518fcc6 *man/REMatrix.Rd
dbb479ca6cd1eaa86cc28dbc018a931a *man/ReductiveHourglassTest.Rd
326dd69bdd136f11e2c25d0e1a2889db *man/SelectGeneSet.Rd
ae61c421709cc5304f1210ab607e17ed *man/TAI.Rd
55493cbe9c6593bb59e3d7457497fb4f *man/TDI.Rd
0ab512dd9f23c3504e5014e6d5c8c949 *man/TPI.Rd
a9fccea13c1744ced12c64a0431d68fa *man/age.apply.Rd
8e85ddc92d203cb73f5cd2ea6e0b1ace *man/bar.colors.Rd
7a1d04213afa1c3eeadc981ff8be6b97 *man/bootMatrix.Rd
59894163b5f3788206f59af640b5103c *man/ecScore.Rd
a0567ae0724fc18ec22a0917db2a5670 *man/geom.mean.Rd
b4b0ac096b4a7d1b7af147fdf2262ac6 *man/harm.mean.Rd
d8cf4d0d4b3a6e89e36cf8e0dafe3b57 *man/is.ExpressionSet.Rd
e27f5fe6bc12e84dc79f1b9f6d8904de *man/omitMatrix.Rd
cdc898fc3b0dfdcfbda68090061c8047 *man/pMatrix.Rd
e61b201f0026019977924e42a592e828 *man/pStrata.Rd
b444e533693777df3e4e9616581fb0d0 *man/pTAI.Rd
a24515c3163c42f10e9e6b9c92fdf40b *man/pTDI.Rd
bf700a6fa9b0a397be86209e6c8da1d4 *man/rhScore.Rd
3db9d4cbf3cd7988232a7ef2a6ca2c2e *man/taxid.Rd
c7570eda6653682d6e7fa3805e392a69 *man/taxonomy.Rd
d01e5fcaa305e88df46466eddf86924f *man/tf.Rd
a83e07206ac4e53ae7d27049a58545e6 *src/RcppExports.cpp
14f9ce83c11e26f238d20dc974d74766 *src/rcpp_funcs.cpp
f0b1c7e2062664dbefc7d59abc6a91c4 *src/registerDynamicSymbol.c
510396716b33300779b32ff07fe0ea5c *tests/testthat.R
fa5897d9448c5831a8af45480e7f8e5d *tests/testthat/test-CollapseReplicates.R
8bb9fba05f9f99bb079a56c74ec8c771 *tests/testthat/test-CombinatorialSignificance.R
7981890a44f94a3fd792af6e33e1884b *tests/testthat/test-DiffGenes.R
5dac47297cb1a3598dc43193e03b2400 *tests/testthat/test-EarlyConservationTest.R
0a078788cc0245a77bec931d7f142ca6 *tests/testthat/test-Expressed.R
663dfefe103814358ee40d62d9ad26a4 *tests/testthat/test-FlatLineTest.R
8b2d2cb7d1ff588daea9cb04087e0bf9 *tests/testthat/test-MatchMap.R
8e859241c7a34bb773b1da6a8d89dc8c *tests/testthat/test-PlotBarRE.R
27d24aebb04d8e40bf3f73f42c7c0ee7 *tests/testthat/test-PlotContribution.R
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c26fb847f0792d719bed746cb83ae768 *tests/testthat/test-PlotDistribution.R
294f974a4287c9bd644ca5301fbe21f1 *tests/testthat/test-PlotEnrichment.R
d02ab36707983a7eeec99d2ce099fa56 *tests/testthat/test-PlotGeneSet.R
dc5380fc285c03f8d112ddf40848c174 *tests/testthat/test-PlotMeans.R
a9723b81822e7427575c25c6b3a3d4a9 *tests/testthat/test-PlotPattern.R
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495d4b478b20e30d97fa94d78d76d329 *tests/testthat/test-REMatrix.R
7ed159fb880e5c9aa82f6834b31a9e0e *tests/testthat/test-ReductiveHourglassTest.R
c1889899872f13eb19b90b83cde478ed *tests/testthat/test-TAI.R
5e35b2cf4d1c68c54d3963e40a69a695 *tests/testthat/test-TDI.R
8cce26fbeacf8b964ebcf761284c1bb1 *tests/testthat/test-age.apply.R
53c42ab443c3af77941c649752fc1d9a *tests/testthat/test-bootMatrix.R
697da6e8d268b315f0e79c09f9753e6f *tests/testthat/test-ecScore.R
3d38a73a5100251a39b7b08d35cab94f *tests/testthat/test-geom.mean.R
ba64cbd6e446912b8a6072b14d181208 *tests/testthat/test-harm.mean.R
a8f0b9db77c381fd2d00b2890f6241eb *tests/testthat/test-omitMatrix.R
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ce282dc007db26254565e4dc21074327 *tests/testthat/test-pStrata.R
4b3d57b0cc9f9378bbde551576a61e87 *tests/testthat/test-pTAI.R
3b8293470cc96dd877382c0bd3e7171a *tests/testthat/test-pTDI.R
af2fe0eaf0f925f542834d5da86d0883 *tests/testthat/test-rhScore.R
c84fb632991403d1385271d3d63eaea9 *tests/testthat/test-taxid.R
8fc414c2aa167d2dc617dc11b5b5295d *tests/testthat/test-taxonomy.R
24c91a1f7439f88f4c7b2198a5cd3ced *tests/testthat/test-tf.R
c8aca12ed766cc5c03fdea1eb0acd159 *vignettes/Advanced.Rmd
7d1abd9543e412a686f42ca0584e2498 *vignettes/Enrichment.Rmd
9476e1413a9fe3c44aae96c521cc4623 *vignettes/Expression.Rmd
455090eef93eb18101a06542a240528f *vignettes/Figures/Fig1.png
946d528800bb428917ebff78023d9384 *vignettes/Figures/Fig2.png
95088161c5cfd9c89e50ca06b82077e0 *vignettes/Figures/Fig3.png
6d71930404a9b082ea5afc252e4861a3 *vignettes/Figures/Fig4.png
543c1f1c3a4058f7815568f6bb5979aa *vignettes/Intermediate.Rmd
218eb46ef3c2c12469bbb7fa6b937352 *vignettes/Introduction.Rmd
c24194413bd461f7456f8e82117f9c76 *vignettes/Taxonomy.Rmd
