1ff1dd8789ab560fadce6c5ab7456a2a *CHANGES
37386c8706912f8cebf6404c043c85d4 *DESCRIPTION
7c078dcf75e5b791f8010f725410b96b *LICENSE
61a8ed2003def6a399dd25e068e2665d *NAMESPACE
57919887e4beaa20501a631b04286c46 *R/add.heritability.q
bf2c640122e04710775ba814539c652f *R/addGE.q
f17ae06baee645d81b6f54d94794c0ed *R/expand.multic.q
d2c2d5feb3a3b2f19237f92c521e3482 *R/fitted.multic.q
e036e0b2803647eaefe226b3257b3fac *R/fixibd.q
cd36447989ef322a24c80cd1446c1c3c *R/gene.eff.q
fae9f28959b98873420358099d5c5b2b *R/get.max.lod.and.locus.q
34efbf3a781dd2e031e04a5487f682d7 *R/get.top.n.families.q
df0f2511b524bab7ea95ea622ea70fc8 *R/herit.se.q
286ab07c149b2fb2e99c0365f5cd48f3 *R/load.effects.q
ed4fbc146e23f0ee574c87b155f39d15 *R/load.inv.exp.sec.der.fixed.q
55641759d76775bfce6eeb6127c1d17d *R/load.inv.exp.sec.der.random.q
13ba0ece70f164d05177fde415432683 *R/load.residuals.q
7bd01a331370fe41680313eb79d27ac8 *R/load.v.matrices.q
726da180d98fac332c3658d42e73993e *R/load.var.sandwich.q
955231872125a7ed25c800c40bda9614 *R/load.y.beta.diffs.q
5ade4c968052df29e9d4177232994e7c *R/matplot.multic.q
bdbbd3d2c60cbf13f814f5304753897c *R/merlin2mloci.q
4859ac2202ef8a4dbdd84f7bac4358d2 *R/mlociCut.q
bd7127bbd6a42857d4bfb191bababc0f *R/multic.q
086cd2dfc7b8736b09404d73eef838cf *R/multic.utilities.q
fbbdba24fd027d59f1f621f35e27dd25 *R/pchisq.mix.q
2cb887acd6e0e97093b697c30bb89185 *R/phi2share.q
481deacba2f6a4979701459edc1686c1 *R/plot.family.lods.q
e5484173d8160c1e3efce3521e6bb033 *R/plot.multic.q
f002d488153a1a449181f1ea8a4a1c29 *R/polygene.q
2f550e6b0ec93628744256416bab87fd *R/print.multic.q
34b1d2003b558068a3e9acd78bd34784 *R/print.summary.multic.q
89d8e96f2cca815e55f162c11149ff96 *R/residuals.multic.q
665c32417de379f3155db282bf3ef1e9 *R/solar2mloci.q
39a65e8b75f997f0c8540062b765334a *R/solar2multic.q
a125a142b79775375bfd416bb631bdd8 *R/subsets.q
3b8b2b2c2d2eceb4a9fe7582c8b6d9f0 *R/summary.multic.q
e1db1c5bbd950c2fce473106b9073196 *R/sw2mloci.q
c8bc55d1c4706076987481f8271d52b2 *R/t.rank.q
fb7adf0f7c323e1885a551d66433e2bf *R/zzz.q
3d9c39a2334f18173b0488eeb876e901 *README
acbee7e239d268ef7aaafef91ff7fc58 *inst/docs/multicTechReport.pdf
0587c9bf1df99b8bbcf7631ee5011b6d *inst/examples/calls.q
0835d5641974843f90820d8d4724a500 *inst/examples/solarOutput/pedindex.cde
18bea5957b2d79b9b9b67100de72768c *inst/examples/solarOutput/pedindex.out
f7e1e9b7b371c411a9b43040686e671c *inst/examples/solarOutput/phi2.gz
4d850269602025bbbddf3f19e5146ab4 *inst/examples/solarOutput/simulated.ped
f51dc4bad0e049aa2aaa7f77d906ae87 *inst/examples/solarOutput/simulated.phen
c1b4f650b0c67092c4b815a0c4475f22 *inst/examples/solarOutput/solarMibds/mibd.5.0.gz
8667cfd0471470e5fd61dc16c0fc8e90 *inst/examples/solarOutput/solarMibds/mibd.5.1.gz
64565695f0c7c1cc780e4271921c0a57 *inst/examples/solarOutput/solarMibds/mibd.5.2.gz
e87db781f62944150b72693f7915dc15 *inst/examples/solarOutput/solarMibds/mibd.5.3.gz
877c8706d2166f949620a88508ed8d06 *inst/examples/solarOutput/solarMibds/mibd.5.4.gz
acbd052fdadf8e0f462144eae704bf8d *inst/examples/solarOutput/solarMibds/mibd.5.5.gz
2486ae4286e1b7f20f13f43138f79698 *inst/examples/swOutput/IBD-18.001.gz
a8d56766ead5650d32dbacf9d9b49b01 *inst/examples/swOutput/IBD-18.002.gz
72ac2b15e590074c7d90773f5fea3691 *inst/examples/swOutput/IBD-18.003.gz
cd9b9d473da52cc8e59edcc4c129534a *inst/examples/swOutput/IBD-18.004.gz
f15208765c5f460154f0b4d56b4595eb *inst/examples/swOutput/IBD-18.005.gz
5c3c43f79097bd5e660e75b58fc59244 *inst/examples/swOutput/IBD-18.006.gz
c004497e291cbac5d99b5635095b6775 *inst/examples/swOutput/IBD-18.007.gz
84fb511e59a2a0ade3b0efcde501dbd6 *inst/examples/swOutput/IBD-18.008.gz
38494ce91f697526784a0f7646e60ea7 *inst/examples/swOutput/IBD-18.009.gz
6340eb42ea314bc07b29776aa29051c0 *inst/examples/swOutput/IBD-18.010.gz
646688bdfafca0b29bfb0856ab26b01f *inst/examples/swOutput/IBD-18.011.gz
5a9603725c76c81a7f86ec558cc0d60a *inst/examples/swOutput/IBD-18.012.gz
31e4e3be14531643591c66b70ae3930b *inst/examples/swOutput/IBD-18.013.gz
4039149aaf05acd9aaf735977ff83324 *inst/examples/swOutput/IBD-18.014.gz
5d8ff37fa1c1bdc067a3726e40ca2b77 *inst/examples/swOutput/IBD-18.015.gz
9093a29c37695d439dcbd32ee7d2ed79 *inst/examples/swOutput/IBD-18.016.gz
910cf559b1ea7d26f62eb8dabc67a9b7 *inst/examples/swOutput/IBD-18.017.gz
e4e5c3260019fc82d14c54eaa219e3c3 *inst/examples/swOutput/IBD-18.018.gz
34de2d18a8e3b405135c50c3b6b217c4 *inst/examples/swOutput/IBD-18.019.gz
5fbfa08fca66e086e0d3f7ee9956b8ac *inst/examples/swOutput/c18.map
14e483defab2a31afb34140d1063d74c *man/addGE.Rd
8e90b040885dd7e4a05f2f4f783f9833 *man/expand.data.Rd
60c64ad246ed7d7a9385794e7e402172 *man/expand.multic.Rd
9bc37ec9cebb9e3d278307f66a431fb9 *man/multic.Rd
e7d16b9adbb25c70c1e52c130f998d28 *man/multic.control.Rd
ea9741b7a2c77878c00a53ba747363ff *man/multic.object.Rd
d8f7e737d73eb75bb566ee84e4030c21 *man/non.user.level.objects.Rd
4878f6dd6183ba1050c82ade0891adf1 *man/phi2share.Rd
65d39dd742fb87ce9a172e01ab110996 *man/plot.family.lods.Rd
b35b11b12b77ea30dedd82e1b9b17072 *man/plot.multic.Rd
c6f6ccee0cb6f2c664912727293ace48 *man/print.multic.Rd
c1db69b26f2ea2d899eccc98ce62bf54 *man/solar2mloci.Rd
0eb7c2419d33dd2f2daac1b35fcdd56e *man/solar2multic.Rd
9012146a9e6cd2ec0539141935030eb7 *man/subsets.Rd
7efb0a27d37ffb2fe6b1954a8b27f2ed *man/summary.multic.Rd
3f43aa2c1d56b16ef37bcc95ef9bb98a *man/sw2mloci.Rd
2b67fb3b8444ec9e8d9eb3e83cb4d210 *man/t.rank.Rd
cc43348b4643334a1d7de64ab34cc745 *src/Calculate.cpp
401f1b685075059e75a78b45de5a946b *src/Calculate.h
68bcb86d6452ccf3a8b53bb0fda55a62 *src/Composite.cpp
6a9a6853b411352346bac8be734b2f8e *src/Composite.h
cf70d87abb11f26532dffe5a1620285f *src/Estimator.h
711b2a4cafa95a475d559483a31c7cc7 *src/InitValue_par.cpp
3214c9d3acff813e55f890acde33a57c *src/InitValue_par.h
39b6b257675388ad2a3ad093a4327793 *src/Least.cpp
b86b13291d03045f1be14f48f049dfb1 *src/Least.h
64ba271c4d422d3bf730f03521019cde *src/Lib.cpp
f524b51b0b430aaef3f4c213202d7b97 *src/Lib.h
4673d83c0a26d6e06c6adde3301fc3ff *src/Likelihoodfun.cpp
0c93278153a74be3b41344f1e6301fd8 *src/Likelihoodfun.h
de2d7d75c0145e40607d797c23cc88f5 *src/Maxfun.cpp
59637e2565e6449d3f07835f5eb7ea07 *src/Maxfun.h
232594b0dfe68a9f498e907125d40098 *src/Maxfun_add.cpp
90e97ed17385cf1e78c761911835f94a *src/Maxfun_add.h
3c86e946c4eea3bb2937dd487b464a55 *src/Maxfun_fun.h
3fc5e98be1bed12132e8f9044aef0e89 *src/Maxfun_source.cpp
923095b2f63d5b64665563269b5a1483 *src/Maxfun_source.h
eeb1279b158749343ae5d39fba5c30d6 *src/Model.cpp
40bc891c37dacb5e17591cb311c17964 *src/Model.h
1515ddb57d89903376a9eb5bf9176e18 *src/ReadFamilyData.cpp
179ec97b724957d62a2001d1fee4e131 *src/ReadFamilyData.h
9f804ad4ee5dc7572b606cabf231f9a6 *src/Robust_Variance.cpp
d95a1c112c095da59981be607c90de60 *src/Robust_Variance.h
1e197cdcc12b03138b74c700eea84bdc *src/Rostream.h
2e2286d821188acfd24e18578179c952 *src/Rstreambuf.cpp
4724518f01ba7bb8bb5663041cbd4357 *src/Rstreambuf.h
e6b502dfda9ff1c9fa6e36b85671c237 *src/ShrinkData.cpp
62171c20d3d4ff999f849f7c617e2e3c *src/ShrinkData.h
bbb7c166e87f47d6c78da08d52010b8b *src/TraitMarkerCov_par.cpp
cf954ce8df270d0730757b4dc34f070f *src/TraitMarkerCov_par.h
e7fc2812bf6b77b9922a958666fb2039 *src/Vector.cpp
4ee3f9d81eace865584dadfa7f68b952 *src/Vector.h
c50fcde3358ecf0f1fe52352ef50395b *src/calculateCorrelations.cpp
88c94244e5096ff20b4e8a2336bba49a *src/extractLoci.cpp
ba1bef13ec7575d24111bd743f4a6803 *src/fixibd.cpp
2f22d2dbd13a939f07c71728a0a07472 *src/fullId.cpp
21709df408a176095cd7c82b2b25eab9 *src/getFamilySizes.cpp
f2967740d6dc7dc3ee4948527c8278ab *src/getResidualPlacement.cpp
576718eb7b2832903ed86e13bd966515 *src/getShareOutOrder.cpp
1752b9569d91c4e0ba15aca568f0f188 *src/isSpouse.cpp
f699ddf3377a72a19558cc90b179cf72 *src/loadEffects.cpp
30b57f42d9e63107d1e4f5f2b28fa4a9 *src/loadFamilyLogLikelihoods.cpp
02687ad38f50603bb5fe6c52b0c4dc22 *src/loadInvExpSecDerRandom.cpp
e5f121d731002c99ef91e998f68102c2 *src/loadVMatrixFile.cpp
12312ec54bf49c39378165dc00f03094 *src/loadVarSandwich.cpp
05aa0a5ecd80cd7afbd7efe2d7a7cc51 *src/loadYBetaDiffFile.cpp
11e778b7e405f9a09306a7eebf7c01ae *src/makeBlockIdPair.cpp
3817a59beb51b394cc879d9bc950c1ec *src/multic.cpp
8d6be4fd01706acae4feb973dd98de8b *src/multic.h
1e0e853cf42d3b930a78e9961824ce4f *src/multicString.cpp
a01f7f7961d75923d8315783aa98dbc8 *src/multicString.h
69f3ac830969dd609c4691cadb891e8b *src/solar2mloci.cpp
db9c7ffa14ad0212164e44ff36156e60 *src/sortIdPairs.cpp
b4470de62f6a87ffb99376a9a58cd776 *src/splitTempMloci.cpp
f454c69460d325b756d1c00dc00be0c8 *src/sw2mloci.cpp
60279fbee4dbc61c2d7c4c13a98e80a7 *src/validateShareOut.cpp
b5bcb5ebdee253d7ca59cccd5e3aac93 *src/verS.h
