e1acc81fbc90a66e9a2d70d0a14158ef *DESCRIPTION
c758c095365864b53ed3bae90ce6ac4b *LICENSE
41712342e91d9275f1ba2ef83b4e9046 *NAMESPACE
cb10e2ccc3b259fba959343bb80af299 *R/applyTraitTradeOffs.R
0866eca2be81539ed0c8b36c128c0b83 *R/assignNAsToMFGs.R
29847a6ec5e7b7de1c1503b5094a5527 *R/assignStrainTraits.R
6036bc61a121c342eb53a339176cb5bb *R/checkResInfo.R
85e315c9f6fece3da47d11bce80abd97 *R/checkSolution.R
8ad0666a114f3277c71699032caa7029 *R/checkStoichiom.R
d62543027a1ee3790e28bf6922863a89 *R/combineGrowthLimFuncDefault.R
68913867e6a454cf98c9575798dbcac7 *R/combinePathsFuncDefault.R
88f9577903bbb0b729d7cdbf932c2554 *R/createDF.R
36c921b739a0b2f94ae483591f5c058e *R/data.R
af64a4e0c492b7d0c51bec9fec8adf98 *R/derivsDefault.R
5723e2bf87ece49dad4e4e09ba9fe26b *R/entryRateFuncDefault.R
a15755233cdfb9388843b7587a17c8b0 *R/extraGrowthLimFuncDefault.R
69cef7b281ac8d85aede57c4d78993e3 *R/getAllResources.R
ae0b0498723da4fae5d0a6aa5e249c69 *R/getGroupName.R
72ad19cabfa09b7f36b3aaa86752277f *R/getKeyRes.R
4c1197a71a0219072a2eff0257a178e6 *R/getMolarStoichiom.R
26ca4ade5db3ae467e1cd3b5ae657409 *R/getMolarYields.R
deeb4b31081819e79d4dc9ea35d15dd1 *R/getNonBoostFrac.R
cc8931656cbf3dcc33dc6e074b008444 *R/getNumPaths.R
4b882c63271f1c6e530fa0e9cb89caae *R/getPHcorners.R
2582a99ea56f886b0605b46df24cc7cf *R/getStrainPHcorners.R
714768a34eb65b3f4e9117c26a4beaf6 *R/getStrainParamsFromFile.R
51655ea72c327ef5f80f0ba7ff9b13dc *R/getValues.R
09f15126a5300f08badae1324628a854 *R/growthLimFuncDefault.R
afd378364cf500ade6161c082eb3ed60 *R/makeInflowFromSoln.R
153016721446fe34802d033240849701 *R/makeParamMatrixG.R
4e7d295e3bd8fc4caf11bc212df6f7c3 *R/makeParamMatrixS.R
9f7cb753c318ffc8ddc401671963e7be *R/massBalanceFuncDefault.R
8b76160b6118ceba1f9bfaa869e4b0ca *R/microPop-internal.R
4a126ccc8443b84c03787976b5ae6fd8 *R/microPop-package.R
a2a2f1f6a7f4fca13e2a0151b57409fe *R/microPopModel.R
6b95575acc23821392721165b8547824 *R/pHFuncDefault.R
415952010d44d797a91b6ede69c1ea18 *R/pHLimFuncDefault.R
f49bfa1edf949b5fd03e47959d94592b *R/pHcentreOfMass.R
d29b61ded8f74e2a43b1b046dfc15a7d *R/plotTraitChange.R
621af87b542dde134f703a1f6beb8545 *R/productionFuncDefault.R
60d228f1daac71fbc737993b96da259a *R/productionFuncOld.R
65cf0f97cc3bcab0b3f5e9288a66b8e7 *R/quickPlot.R
df7425c16b945257f5a63498c4ba0075 *R/rateFuncsDefault.R
641b70dd712e6d9e6c33c3a207537b02 *R/removalRateFuncDefault.R
58e975620172859a64988bdf46d7bebe *R/replaceListItems.R
2e1ebc2d2d8683f5d3ba0f7cab6898d6 *R/runMicroPopExample.R
f6af82fdc0a7c7fddd7bd421a4aac64d *R/subsetFunc.R
7a4523baededd8c3c73dde378aff3fb5 *R/uptakeFuncDefault.R
027bde4d86a23b59a069ed8d13820a85 *R/waterUptakeRatio.R
435cc68a8a19e7f2a6401333f6327581 *build/vignette.rds
5cc9cf34f045782d0a47f47e4d32410c *data/Acetogens.RData
afa628ff1dc544a7ae3d9b7eae2b0898 *data/Bacteroides.RData
07c94473502a4b595079894d97c358c4 *data/ButyrateProducers1.RData
559b634469df8de538b86def2a706cae *data/ButyrateProducers2.RData
6bea7be2a3c71bcf2897574f8b31712a *data/ButyrateProducers3.RData
cd20dd6926e84a8479f8bbed7fd9409e *data/LactateProducers.RData
0ccb7153d945e953891ae4f5060fbc07 *data/MFG.RData
362bf195fc5c09b3d1f8180cd4943c36 *data/Methanogens.RData
7d454d3b2b2909ed461273e580193b4d *data/NoButyFibreDeg.RData
46187d809fb3be052059fa7be15b75b3 *data/NoButyStarchDeg.RData
1ae9fdda1d9582889245accdf5cdf9c0 *data/PropionateProducers.RData
f6684dd75b99ab91d9bc70447781a998 *data/Xaa.RData
fa938c00659ba56d0832af370d2856c6 *data/Xh2.RData
dc34c401f1038c5499420241ac1bf57e *data/Xsu.RData
8e3b82605c1ddf3bc425bb9ade687831 *data/microbeSysInfo.RData
9bf591a80a0ac1a08cf113960e59db32 *data/microbeSysInfoHuman.RData
aee1cbb40be8aa05081f3e668c2122f2 *data/microbeSysInfoRumen.RData
0c834eb5ff7599fe72238dce8d9c542a *data/resourceSysInfo.RData
2d98c6560619dcaffc320714bfd9fb6d *data/resourceSysInfoHuman.RData
fce6cee349865b7351afd7374a328e0b *data/resourceSysInfoRumen.RData
3cda8018be743e2d40c2b8899e7ae461 *data/strainParams.RData
74af321ed3d7b21d8e0e09d7d057d3a3 *data/systemInfoMicrobesPhyto.RData
bc5a64fc19bc550f08e7a49b96f9e96e *data/systemInfoMicrobesVirus.RData
0fcc92860f2fc2b71c76161a1443d680 *data/systemInfoResourcesPhyto.RData
1252d43482ce33a4c598ce6249725891 *data/systemInfoResourcesVirus.RData
a200413e49385e9ac1b5debc78b219bb *inst/DemoFiles/human1.R
510a496e634073e7d14f7e85a0fb7c2b *inst/DemoFiles/human2.R
e7b4560518cd5bc466ad992295864f16 *inst/DemoFiles/human3.R
068624fc2dc8a9c43786c83fd9a3513f *inst/DemoFiles/human4.R
2ccd7942172e25a3e3fd113bf65e3e12 *inst/DemoFiles/phages.R
6dd40f88a6a360f062992dbe6075610f *inst/DemoFiles/phyto.R
30c9da67b3e9f3a5f539885ab3b9c6a3 *inst/DemoFiles/rumen.R
bd434b3274bfcc291683f857a0d35882 *inst/doc/microPop.pdf
061e5dc1fb215f823437ef698338d1b0 *inst/doc/microPop.pdf.asis
df608206cea648313d7ecdd601237c05 *inst/extdata/Acetogens.csv
d1a997015a5da7363ee56a7d9c922f95 *inst/extdata/Bacteroides.csv
929dad9f804d385df7fba41c377f1518 *inst/extdata/ButyrateProducers1.csv
fefcde482877beca53ac035b5c3d29a4 *inst/extdata/ButyrateProducers2.csv
216d735968152231365b739b4f4a40e9 *inst/extdata/ButyrateProducers3.csv
761f0a5edc364a4cd95c50dd8282d331 *inst/extdata/LactateProducers.csv
26d493ec55c0902963b43a6b1bbfd2f4 *inst/extdata/MFG.csv
00786058a89692576cd5ebf174660878 *inst/extdata/Methanogens.csv
1da4dd4f0b39612ddd665c38edda7518 *inst/extdata/NoButyFibreDeg.csv
55a8e1ba10d15664cdb2ce2eff13a22f *inst/extdata/NoButyStarchDeg.csv
3c9bc7f3e11de0fc38e16d8f19970eb6 *inst/extdata/PropionateProducers.csv
8a3a896c9759a641f148c9bc3d83c9ef *inst/extdata/Xaa.csv
8c315a06f6bcb053c5f0d76c5cccb82f *inst/extdata/Xh2.csv
a8584eb25c8e59c0387efd0a68281dc4 *inst/extdata/Xsu.csv
8c0500298443160d57a433fc7e0b3938 *inst/extdata/microbeSysInfo.csv
8c0500298443160d57a433fc7e0b3938 *inst/extdata/microbeSysInfoHuman.csv
1714a617e4e7a3b2a38e1f03620280f7 *inst/extdata/microbeSysInfoRumen.csv
44ceb5b359966d37115ecd09caad6877 *inst/extdata/resourceSysInfo.csv
1d4b12b2a97153ab07893f4b0e7e03fe *inst/extdata/resourceSysInfoHuman.csv
6a38e0b29fbdf3e3e147e14893526cb1 *inst/extdata/resourceSysInfoRumen.csv
7990ce6c46f5b8431bdf7a26fd1a1cbd *inst/extdata/strainParams.csv
ffae1f99aab6d4a2b05fc53e580095eb *inst/extdata/systemInfoMicrobesPhyto.csv
5e20079438830a00f55feb465afbfba1 *inst/extdata/systemInfoMicrobesVirus.csv
58cf47af993818b17ba48b38ca70f214 *inst/extdata/systemInfoResourcesPhyto.csv
cc96261ad78c4d4303fccf9fa6341edd *inst/extdata/systemInfoResourcesVirus.csv
6febcb0da1812fb05321e7e6ed729296 *man/Acetogens.Rd
4010653861d6ebb23be5cc409c4a2345 *man/Bacteroides.Rd
678d63bc07455d3fd13b46b69f25a4aa *man/ButyrateProducers1.Rd
842c345b5fe7c642449035d899d1e45f *man/ButyrateProducers2.Rd
4e2a54eb9aa8e5f4ff1744b4aba293e3 *man/ButyrateProducers3.Rd
c4998d45a65dec7585b2b57c8251c7c4 *man/LactateProducers.Rd
77106ebc3534cd464e73ebf960dc5fd3 *man/MFG.Rd
6020adafd5628e094e3a17a1c1552dec *man/Methanogens.Rd
5e69341668c2929672992f305341974c *man/NoButyFibreDeg.Rd
545ced38a0b5eb4cda4be512b5a08992 *man/NoButyStarchDeg.Rd
35a53910ba28552f0728b658425451d2 *man/PropionateProducers.Rd
e12bdccec4db2c5f9a4a92ec0b55740b *man/Xaa.Rd
ef35d34a368302570255601fd8e2431c *man/Xh2.Rd
0fc437de0867577b9bf475a10452ea7f *man/Xsu.Rd
9064c8a905e1db0ae57e581b2a54cb81 *man/applyTraitTradeOffs.Rd
f13b812bda0fb1d52523dc769e472f52 *man/assignNAsToMFGS.Rd
a3b08bdc78086b1cdc1a21645e9d90fb *man/assignStrainTraits.Rd
6202ac988ae02bc1e1dc26b8e8db315d *man/checkResInfo.Rd
44cbe25402ab1f6661004bdfb1c73af2 *man/checkSolution.Rd
df81ecf93662257a303b6160cad755f5 *man/checkStoichiom.Rd
278e23aff5193b019a3bf1e1e1d2eaf8 *man/combineGrowthLimFuncDefault.Rd
66686987c1f75dc4a0170a6a4fc745ba *man/combinePathsFuncDefault.Rd
c6fefba43deedc8353f313fb89e4ad45 *man/createDF.Rd
fb672766356083dd52184b60b9350af9 *man/derivsDefault.Rd
301e9bc710be08e27d90c6c33bcde8b8 *man/entryRateFuncDefault.Rd
1a9de6d036ba54fb30c741eff66de7a3 *man/extraGrowthLimFuncDefault.Rd
956dff4e9ee19277df3fdba4610ff9ac *man/getAllResources.Rd
65f129c00bd772bce5af53d114d16aa3 *man/getGroupName.Rd
dab82df2d1f0dd7e7f394d02380b38f1 *man/getKeyRes.Rd
62b675f772ca3970f49155328f4f0fb8 *man/getMolarStoichiom.Rd
aa0c7c49aebab9e87c3f0625ba39d1a6 *man/getNonBoostFrac.Rd
78c6718853fa5bf32acaa46071ec3dc5 *man/getNumPaths.Rd
7ec90264047bb4cd8b99ab4b4f07f56c *man/getPHcorners.Rd
7cadbb2c2f5652232a60f368d73c43d2 *man/getStrainParamsFromFile.Rd
49fb3fa6a0d15ce5b6a51643aa542b14 *man/getValues.Rd
cc1e0d0636b76a1a609ed5cac5614876 *man/growthLimFuncDefault.Rd
4d6b56d1124aa1c3683d842575580cc8 *man/makeInflowFromSoln.Rd
709cb4a2b8917bce0bf0646c2b178f70 *man/makeParamMatrixG.Rd
af3da6c4269374c8241e2784d1d01f81 *man/makeParamMatrixS.Rd
19af39844890e6bdaa1e1a21d6232f91 *man/massBalanceFuncDefault.Rd
749a590d46428a7010454bb31a696018 *man/microPop-package.Rd
5d8c899dec29096ef8d7fc05bdb8e0ba *man/microPopModel.Rd
4c2329af1238818a8b7a6531a3baf520 *man/microbeSysInfo.Rd
5da8c069c915178bbb6fe4372761459c *man/microbeSysInfoHuman.Rd
a6bd88d1c0b402f156dcefa7c09108bc *man/microbeSysInfoRumen.Rd
094dd55fd46692ec24a302ecd4b17cd4 *man/pHFuncDefault.Rd
3cef7cc4323c5ca63a3f8c02a2312f32 *man/pHLimFuncDefault.Rd
7f8efc0f8f7cd6b2d88c188f8a38bd09 *man/pHcentreOfMass.Rd
bf92b68260c71e49ae6b33569ce1397a *man/plotTraitChange.Rd
d8c4ac0725be046ed8108ff1bbc986c3 *man/productionFuncDefault.Rd
a5d46d18607f638c6a17a5519d55439b *man/quickPlot.Rd
b18be19dec870482219d9922376ef5ea *man/rateFuncsDefault.Rd
44f5943be8cff6777ae87226a8ffa764 *man/removalRateFuncDefault.Rd
2c37dc786ed3d269a5a35e442a1362a7 *man/replaceListItems.Rd
6b55ea0d32a19f954959a6e6b9f4ddd2 *man/resourceSysInfo.Rd
9978862951628b0f9f55850e1e67793c *man/resourceSysInfoHuman.Rd
36959f37165c434928716121ea173ac6 *man/resourceSysInfoRumen.Rd
9ee8221ca505cfc9a2b58e48314cfa83 *man/runMicroPopExample.Rd
bef5a3f4ac945643c773c6d69cf7bd42 *man/strainParams.Rd
4f35d19139ef7e36389ac6d449a40dca *man/subsetFunc.Rd
b66ef82d140b26411a815db19c64e25f *man/systemInfoMicrobesPhyto.Rd
39f0deb4978fa31b515223b41b10123c *man/systemInfoMicrobesVirus.Rd
61b2326e5a060fcde08c0d011446ea5e *man/systemInfoResourcesPhyto.Rd
4306343cb1526db6ede81a33032752bc *man/systemInfoResourcesVirus.Rd
c0895bc0b959e9406a24430027fe35c1 *man/uptakeFuncDefault.Rd
4dec5b7078402b867b220ae39f7bba5e *man/waterUptakeRatio.Rd
061e5dc1fb215f823437ef698338d1b0 *vignettes/microPop.pdf.asis
