f7c86f42a1bb7cdb820b96bf26b70d55 *DESCRIPTION
b234ee4d69f5fce4486a80fdaf4a4263 *LICENSE
fd091b5eb3ce564ae54d3950267dd1ea *NAMESPACE
9b321600f0e8778278011918517de75d *NEWS.md
f39ad67cbe03d717772cfbe56900613f *R/AgriLand.R
79e87ec746eba54e45ec2d9be17ab773 *R/Class-LandsepiParams.R
b9edc02613d3b3e17d1b39075225e953 *R/Cultivars_List.R
19a236ecedf8ec8bff63b6bf0b2dc18b *R/GPKGTools.R
2bb2bde468a5599028b9cafec466b4f3 *R/Math-Functions.R
7da23884c9a3ccb4e18fe2aa2d9b82c0 *R/Methods-LandsepiParams.R
a27aa5daf2089379a6d7ddc49000dd50 *R/RcppExports.R
ff99b5034401561ce0e6507b91b1940d *R/demo_landsepi.R
2595134fa04c6797f5b2c187d05f4f94 *R/graphics.R
b2c332eb9e0526f66f1a4822917146f8 *R/landsepi.R
2fdee0e9d24a9963effe84194dc7ef9d *R/output.R
9488416fc9ca7782842d0d8d77cadfe9 *R/runShiny.R
491fd024178da370581cd29c00953536 *R/simul_landsepi.R
34ab75c3c80da4c76427b2fbda65d5d5 *R/tools.R
60d3d7a2256bc38e52317c8cf0e3aea8 *build/vignette.rds
15eb47296d29fdcb6c78ddffff22e358 *configure
f84a7f6aa602735f258912fa4f2e8932 *configure.ac
4d399474f8f701731b404f78fe57a172 *data/dispP_a40_b7.rda
79c78c20922885b96bd6d2e35198c24a *data/landscapesTEST.rda
e563fa6c8118cd0191ce41dc5151bcb7 *inst/CITATION
9ca76eb0b35da9bdf77fef9e836c15e7 *inst/doc/O1-run_simple_simul.R
5f1f3fa2156c829d30853e59f8252198 *inst/doc/O1-run_simple_simul.Rmd
a75fc93dbc4c87185e623522b4bc308a *inst/doc/O1-run_simple_simul.html
7187adfb72d8a968c7119521ad1e6123 *inst/doc/O2-run_exp_design.R
d6bda42b8c7f08327cbcbbec9f559ec8 *inst/doc/O2-run_exp_design.Rmd
b5ab255e1215a7e72395d955459890be *inst/doc/O2-run_exp_design.html
4591a3732f42f52bae34a2d4adc69647 *inst/doc/O3-landscape_dispersal.R
32eccc96ff7f4d87c293930eeff29516 *inst/doc/O3-landscape_dispersal.Rmd
a2dbee51d2172199854be07d40b6efa5 *inst/doc/O3-landscape_dispersal.html
ac88dcf3c3e797085fbd1ff47ff0c9d5 *inst/doc/O4-run_sex_repro.R
c3ce27d62dfdd6fa8caabb8d32b307d2 *inst/doc/O4-run_sex_repro.Rmd
9964c439e910c5aab6980834432bbe4d *inst/doc/O4-run_sex_repro.html
e1b436c0d37878e5ac8eda397d1dda17 *inst/doc/landsepi_poster.Rnw
c1b68c5293a82d2ee6cd7ccb3b3b1571 *inst/doc/landsepi_poster.pdf
db6411e34b34532b1807927eed719ad0 *inst/doc/list_of_parameters.Rnw
a7c56917d1c562771c0c142161e62f39 *inst/doc/list_of_parameters.pdf
e9b37d9aad5b65b836a2234b53580863 *inst/shiny-landsepi/Dockerfile
0d65a2dac3d18b8ca7ee4f406915a36e *inst/shiny-landsepi/app.R
a7bf324fce324837de03367fb7ed5ab2 *inst/shiny-landsepi/global.R
444e3aeeca91d7e42293f27a4c92514e *inst/shiny-landsepi/modules/editableDT.R
5ca5fdfbebf2d2d05542c44c6bb6f2ca *inst/shiny-landsepi/server.R
8ba0244c9a16ac0048b7f489c6f721bb *inst/shiny-landsepi/ui.R
eedf0bf5d41165c9467176826296aee3 *inst/shiny-landsepi/www/CSIRO_Logo.png
a8aef070674ad7d1806c35a12c7fd2f3 *inst/shiny-landsepi/www/LogoINRAE_Fr_rvb_web.png
de4eeddc3f064fdf64ada7f051009315 *inst/shiny-landsepi/www/PATHO_inra_logo.png
47242bd907198c623cb046463abfb78d *inst/shiny-landsepi/www/Republique_Francaise_RVB.jpg
4a719158a12ed63c5019a0473e532b99 *inst/shiny-landsepi/www/landsepi-logo.png
24320eb49a750dfa8576f6398b12fe43 *inst/shiny-landsepi/www/logoBIOSP.jpeg
945b60747b4b27a286f0f0ccb735e3b6 *inst/shiny-landsepi/www/script.js
6b8d5dc16ebfae2c9de0fc62cc8224f1 *inst/shiny-landsepi/www/style.css
f557d252e74e2ef9e592a28dc3cfbc64 *man/AgriLand.Rd
b9366158cf990155e96d13d388149621 *man/CroptypeBDD2Params.Rd
051c45b8533757bacaede94fd4e8d48b *man/CultivarBDD2Params.Rd
c434056872e22ba0ca38d9da995f7b3d *man/CultivarGeneBDD2Params.Rd
bfbf87ab800d6019378dd8cca2597588 *man/Cultivars_list.Rd
d84d71df6a333aa1ec646005b215d5bf *man/GPKGAddInputData.Rd
47cad9618f0d5f564d8f525f560a1b82 *man/GPKGAddTables.Rd
6325414fd57c358c6fe77875b26e8c3b *man/GeneBDD2Params.Rd
e2c45c1636b2cd61a3db8e73e837a135 *man/LandsepiParams.Rd
94df344344cb5a57f10a49a4edae6ef2 *man/allocateCroptypeCultivars.Rd
ad1b52412a2762b33de999ac4fd6b4a5 *man/allocateCultivarGenes.Rd
d0301ba71c9869092ddc9f31df832c56 *man/allocateLandscapeCroptypes.Rd
41f0ced8fc63555df5ede61d83be6ad3 *man/antideriv_verhulst.Rd
3b735de5c8418210450dd94532a321d9 *man/checkCroptypes.Rd
a421aadb784d386c28b8e3db1e89d33e *man/checkCultivars.Rd
48151276fa7014825eb4d3e452d36061 *man/checkCultivarsGenes.Rd
551e3b392678b8bf6211af89fa90ffe6 *man/checkDispersalHost.Rd
eb8d0c31f88e90cb46ff4541888c2a8b *man/checkDispersalPathogen.Rd
00675c77980b1e506dd599b878b28cfd *man/checkGenes.Rd
8947f273b2686ec286a1799683308a70 *man/checkInoculum.Rd
38ce87df6b38499897964857363183bf *man/checkLandscape.Rd
c65bb7f4c973025541bdc6fa480334df *man/checkOutputs.Rd
72bde0c8dffc470034e0dbd48b770ca0 *man/checkPathogen.Rd
c7eacc9255662952577351970d8401c8 *man/checkSimulParams.Rd
86546311d9ecf1076d25fbeb9650b1f7 *man/checkTime.Rd
c3c353cab0b97a89bc374e8695f60458 *man/checkTreatment.Rd
e53e57f0b77fc92a8fa1dcbf0df08163 *man/compute_audpc100S.Rd
334264333cc213690def9ef5279d7aed *man/createLandscapeGPKG.Rd
27c94bdcf6d558b6aaa90c45abe7d77f *man/createSimulParams.Rd
5718ccc182067fc4d4ab6511ec0b2bfb *man/demo_landsepi.Rd
f0c936cd68c89064cd335db2f4795fcc *man/dispP.Rd
f3d18d0c2732f068472131b3e815a8b8 *man/epid_output.Rd
f5eb3b356293501ee93d18b80e90c807 *man/evol_output.Rd
4a719158a12ed63c5019a0473e532b99 *man/figures/landsepi-logo.png
b7f8c1609495212b92d7f24d2bfd69e8 *man/getGPKGArea.Rd
901d703abe25fe34ba8a403c080c2c0b *man/getGPKGCroptypes.Rd
684cd85115caf9b675acfd10b1248da9 *man/getGPKGCroptypesRaw.Rd
ae2fd99558d5543e06d31635aae19cef *man/getGPKGCultivars.Rd
cc32d2f7415733ef0f9d6dc866e585fe *man/getGPKGCultivarsGenes.Rd
14885b304ecd739994be39de181afe72 *man/getGPKGGeneIDForCultivar.Rd
81c79eca7224f7b81f09bd615fe43641 *man/getGPKGGenes.Rd
098bdae0fa95b1cb68788bb2c2a12856 *man/getGPKGRotation.Rd
5a1bcf67b83c4776e75155bed153ff4f *man/initialize-methods.Rd
5ab2c1f613eb34fa684bfb62e4d1ae43 *man/invlogit.Rd
1262f4b0c10b6566d64045fd4bc12057 *man/is.in.01.Rd
007a39fcfedcb5f7a8075db09be85b7c *man/is.positive.Rd
0c2d8741d931c882b3ac8c26b9ffa39b *man/is.strict.positive.Rd
14f3696acb8323986931713939ca2be8 *man/is.wholenumber.Rd
48f964f975489bd1c3434344d158fa41 *man/landscapeTEST.Rd
39853c9c8318e4251b57969eb31f8e96 *man/landsepi-package.Rd
afdb77112261d54adda7f6bd4372ac57 *man/loadCroptypes.Rd
06c5961db815b6322ff2d50589277ff7 *man/loadCultivar.Rd
11fbc67ebb91094dcb9cbb68bffd4388 *man/loadDispersalHost.Rd
3d54420aa7693eaedfc5743d4dd3f03e *man/loadDispersalPathogen.Rd
5eea0020ae6d40557d545ac2b06e1906 *man/loadGene.Rd
3b70f347db095f17280dd8714d0d7613 *man/loadLandscape.Rd
fbb27acd07f1057ad837a6d82d49c9f4 *man/loadOutputs.Rd
460a9470bbe37fc11e7e3956e348b8b7 *man/loadPathogen.Rd
a854aa41f9d600e314118ee4e760f2d7 *man/loadSimulParams.Rd
c7d58da38dbba7b2bd8db17ca0673d0e *man/loadTreatment.Rd
c42fedd158ecf96e7d3b5cfde54fc404 *man/logit.Rd
9206fddec011afdc6ebe8914a7447ba3 *man/model_landsepi.Rd
6855cdaaa022757d8a1e9029bdb46dfe *man/multiN.Rd
73e7c91bc38d57e291203c17272904ad *man/params2CroptypeBDD.Rd
dcfe571723741cb5013edb80003d6988 *man/params2CultivarBDD.Rd
8ad2d2c5337d21e23247893f23655bf4 *man/params2GeneBDD.Rd
278dfce5154d9e495792c9aa5fd1a042 *man/params2GeneListBDD.Rd
553faf5c971029955daeed0f343758f0 *man/periodic_cov.Rd
17148cced8582d9cabf5a8b845292fee *man/plot_allocation.Rd
87c9c0219475e162026be3ee2983a090 *man/plot_freqPatho.Rd
81c1b2713e43dca7a4fc9cb8799676be *man/plotland.Rd
91d0d2ca4bd92122a016e4d113f7d823 *man/price_reduction.Rd
0f345998a7c9b1fa7637086524f4597b *man/print-methods.Rd
8853999487d94c068d63ecf2098bacdd *man/resetCultivarsGenes.Rd
ba8e50a7450a2e916b5b4235c7a23171 *man/runShinyApp.Rd
1e75d301d2499005e90fc6c83a4b04bf *man/runSimul.Rd
f1df1545fcb6e7fadaaca809be9bd058 *man/saveDeploymentStrategy.Rd
b31f6176bdb0bb212696e3f6c7ddd2f0 *man/setCroptypes.Rd
5d2b4d142fc8fe0b1340e04189d9bc4a *man/setCultivars.Rd
08ae7c5ba4c3da630f4a1944a6739a7d *man/setDispersalHost.Rd
d36a4d2c5ed9b6ab55ffedd9e5d59477 *man/setDispersalPathogen.Rd
cff21adb8cf7bd4d62825abb6c8a69b1 *man/setGenes.Rd
16d77494295041088bd5f8c18ca9a92a *man/setInoculum.Rd
799f7e386aca057b6512612ff9b99ba1 *man/setLansdcape.Rd
8b78f0facd8be43c6850d4fb7c22dfce *man/setOutputs.Rd
8c6c95577c07dc36486e1cab5594183a *man/setPathogen.Rd
9ecd61cca5d67d444c6bc1602b9f2c11 *man/setReproSexProb.Rd
98dc218c69220a667bebcec4d6d5283f *man/setSeed.Rd
b456f1d9697dbc650a069c6f017a92b7 *man/setSeedValue.Rd
4e4e38055886d948d9a8c8e164b7013c *man/setTime.Rd
2b937331bf7d0afb43ba3cb7c4a7e65d *man/setTreatment.Rd
e2bf55e0df5c021b761f856b48e20c2c *man/show-methods.Rd
dd677eb5170003ef1ed222549bc2b117 *man/simul_landsepi.Rd
fdb508ffa06142a60aa9d3ed44ed19a7 *man/summary-methods.Rd
848d479edf6c7ae9932dc1802d6dad1e *man/switch_patho_to_aggr.Rd
5fa18644f5803f2582b63cabdee193b6 *man/video.Rd
c4c4309f793f2e06bcc78bbbdc90993f *src/Basic_patho.cpp
92607d1128bd0738f70dba7848935db7 *src/Basic_patho.hpp
354d4fd2dba6c4f51c698ac9280e33d5 *src/Croptype.cpp
2bc53d5e3519b1e3d54c7e5371d3219f *src/Croptype.hpp
bebc30b5750f0bda370a8de7d1bf7d8d *src/Cultivar.cpp
a4375f770652048c978a087e0e9ed8f6 *src/Cultivar.hpp
513d6b327e83a442023571823882fbd6 *src/Gene.cpp
aaa22956d0bdefde61ee3c4ec386b187 *src/Gene.hpp
3c3d73270f60884d808cbee77bad2cc5 *src/Makevars.in
188a32c21171727fae81d7e3d45bec03 *src/Makevars.win
f68b44d619330138fc9e5889f2c3776a *src/Model.cpp
8589a6e27f1e6310758e3c9e003a4e46 *src/Model.hpp
40d3255b87b91152a330a6b27a04bfef *src/RcppExports.cpp
3eb34e68ee9db0f4a8cb3c7e5de686b2 *src/Treatment.cpp
1a7f7a738bd93d9b49d04bc8d4d80ee7 *src/Treatment.hpp
0e5067f0f83137353ccb3f37559f5cfc *src/functions.cpp
851ee4bfe5b6980c22dc68746df30980 *src/functions.hpp
b49d5dbcfee99265f5d73dc67bba57f9 *src/gprof.cpp
bc7cac190de5bdd698d3823c00672a61 *src/initialisation.cpp
f1e4c59814dca62f16796995bfc223ea *src/printReadWrite.cpp
2465aed543f87fb407cd5fad104699e7 *src/printReadWrite.hpp
a45ed9d75d2d6949a99fa58c11ef7517 *tests/testthat.R
5c47b96180a54391313b02f9a3731c70 *tests/testthat/test-LandsepiParams-Method.R
27b49d78b81b50d1c0114325db3eb5ed *tests/testthat/test-invlogit.R
312cd1e10fb5392d77acc161581ac83d *tests/testthat/test-logit.R
d385d0c965a08ecdec4e59c86bda9b00 *tests/testthat/test.shp
0da039c41ba7da342c85fe9531e1df8c *tests/testthat/test.shx
f77085ee6021864661940dcb3623b51e *tools/winlibs.R
5f1f3fa2156c829d30853e59f8252198 *vignettes/O1-run_simple_simul.Rmd
d6bda42b8c7f08327cbcbbec9f559ec8 *vignettes/O2-run_exp_design.Rmd
32eccc96ff7f4d87c293930eeff29516 *vignettes/O3-landscape_dispersal.Rmd
c3ce27d62dfdd6fa8caabb8d32b307d2 *vignettes/O4-run_sex_repro.Rmd
e1b436c0d37878e5ac8eda397d1dda17 *vignettes/landsepi_poster.Rnw
7c72e8c0904c83b04fe94d46aaf15a17 *vignettes/landsepiposter.pdf
db6411e34b34532b1807927eed719ad0 *vignettes/list_of_parameters.Rnw
13619ad9f9531b4659319c10f5fda8c6 *vignettes/listofparameters.pdf
