f692bacf037326c2b9b1d062d9f23b73 *ChangeLog
ee17976f19f40e69ba84baa74a46a334 *DESCRIPTION
3de28e1de4857fcee23e878dbe8d7e4c *NAMESPACE
c28217a05515649b1915f9906c056930 *R/EQQ.R
3ed1a91b97c85682a2c982401685a415 *R/dirichlet_functions.R
a4c4df55da9d3730f984e3270b69ccd1 *R/getSeqKernel.r
ca9f26884612272cdcadce6dc973c6ad *R/krm.most.R
138f4b6e32c8d064319449684bd42685 *R/krm.score.test.R
6bca58a4b761e36f6cacf978f17fc484 *R/misc.R
008930cd6661f5328e4df5e1d8318d55 *R/profile_HMM.R
1fc36f2bcc5166cb1a1e90494ed9eb69 *R/seq_alignment.R
9393964c40695f069a7a23789debc84c *R/seq_read_write.R
c3e9e5f5939b4ff97b3b52a83b2299bb *R/sim.liu.R
4738f7e7ed1b18118e95731494a28577 *data/aa.prop.list.rda
5cd0cf7f75915f51b15c5ed18d49f6fe *data/cloud9.rda
2fe627465ecefb86f566c590b946f9af *inst/misc/SETpfamseed_aligned_for_testing.fasta
61429f072ba7f319d3906a2852753fbc *inst/misc/sim1.fasta
8ccd0fab988819eabce174ca5af1bbd9 *inst/misc/y1.txt
a616e808bd826e929f56223020649675 *inst/unitTests/Makefile
f5603c25cdff9c9cbc647efee4f2b2fd *inst/unitTests/report.txt
515b18df7e17596dc38b9dbea407b26f *inst/unitTests/runRUnitTests.R
1b8e6c7c36acf91bd4baa40b3b8b7fad *inst/unitTests/runit.getSeqKernel.R
97f1a4bb8aed1530972e070ff0da9e66 *inst/unitTests/runit.krm.most.R
2ffecd00d09c454e7ded8dfe37a905a2 *inst/unitTests/runit.krm.score.test.R
cd44d05946a35795593e0921c2712c42 *man/aa.prop.list.Rd
fccaa08ec07e2deb260ed3e10d3c1eab *man/chi.norm.Rd
945d9e8827d7884211c7347ef8032321 *man/cloud9.Rd
75fd0ac8139bda858ab59b84075ebe14 *man/dirichlet_functions.Rd
b845fcaeac649b9257b1a974899c0dbe *man/getSeqKernel.Rd
36be5e985e9560a2122e2280c9c6dc92 *man/krm.Rd
41f78d960f6830baf2d8340b5122c21a *man/krm.most.Rd
190d5b54f2aee8ad5b8ec08ad39325f3 *man/krm.score.test.Rd
2f0b1380158ef5d6824d0bb2824bc461 *man/profile_HMM.Rd
da12db8bcc82d7985a646210e6c66d72 *man/seq_alignment.Rd
26eea14c34116f2a4570747b60cc9552 *man/seq_read_write.Rd
5d16f04970a9eef96ef68c62c1e38323 *man/sim.liu.Rd
574a2a5f63e9d92b7dbbfe4955b69e80 *src/DirichletRV.cpp
afff9ce1d6a8cd88c2d0c25f3f75c55c *src/DirichletRV.h
6d45922544b73aad428eb8e399ceef13 *src/MI_kernel.cpp
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
429b001713d09ce3a20c0e03325359c9 *src/Makevars.win
b3c61a26e1c6b5dac442f6207c17c64a *src/MathPlus.h
5de86dd659ae4391abaed9f1272e0009 *src/MixtureDirichletRV.cpp
3674bb362d4ff5ad8addd54170756c54 *src/MixtureDirichletRV.h
5edc42b03c83006ffbc9ff18983ed928 *src/Observable.h
49a484c2ab97c7d575789cdc004b1662 *src/ProteinSequence.cpp
d48533729d38a49a78b8f754defd73ea *src/ProteinSequence.h
4f7f6205e02dde76808fdcb8ae60a9f6 *src/RandomPlus.h
74d9be058c2864ff19f1e337e029b399 *src/StatPlus.h
2f10d846286e8ad5006cae73d2b33820 *src/U.h
9597814309f5c4b104f7d4bb6320a8ea *src/rvgs.cpp
e9dedb79359c1d90e4d05b7df5372c9a *src/rvgs.h
f007736f0142440bf4258832f8b2c778 *src/score_var.cpp
dd6dc41dfad0a8099d25915b1441df8e *src/var_Q.cpp
e221855f7cfe6f37f265f6e1966c8f6f *tests/doRUnit.R
