d0784114d4b74d34389d73ca3d1780c6 *DESCRIPTION
3e68759db3d5875e1d9179f1835093fc *NAMESPACE
ab4744ab930fd592f1f770c35aa38c2b *R/DataSimulation.R
8abf008dbdbd1e309c6821c1e0889c07 *R/EnvironmentalFit.R
78676c05ddfd20fa77f59cf89ce5a121 *R/EvaluationCriteria.R
c88ebe4ece5e4418e9a3622048739213 *R/IBDModels.R
c82a4badaabff931d975b6aa03060e9c *R/IrregularSamplingTimes.R
78c986993286bc903e7594361ee70ccb *R/NullModel.R
1374e60a5e272a6f79fa719296ea146b *R/RatesToProbabilities.R
4af2ee454a65cee844a4e550fe4e7de6 *R/RegularSamplingTimes.R
5aa2b8ee8af77c5427fa0ff687a6fbe7 *R/alonso15.R
92ec671515f8f59f1e1e864a96cf6ba2 *R/da_MacKenzie_mle.R
c45281324f6f375e3897dc3726e6c72d *R/da_mle_cedp.R
7fe70926529c03085f787c9b83c08a10 *R/da_upgma_AIC_cedp.R
cac6b13c024033745564b9516c19015c *R/idaho.R
6bb0b1fca3a98edc55bf09754534ec57 *R/island.R
849bd86918912bb422c245d5169bcef8 *R/lakshadweep.R
ad34e7b0b751a6ccd0ac565bb488039f *R/lakshadweepPLUS.R
ff44a8bd59eeea7966726a50e068bd52 *R/simberloff.R
358e5a26be62db0864555e850a800003 *build/vignette.rds
8b729c72322c972f605903b8e6a93e63 *cleanup
d76d11b135dcccf54c6238f9c1caa558 *configure
f8c9a0b6ab374eddb638aa03a93eaa0b *configure.ac
1cd1e6c50f8e6201c7bf0f92f6b3c334 *data/alonso15.RData
f8f8802df20456e3f7d619158d99d9a2 *data/idaho.RData
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b7536239b307cf03916bd6b43e343c92 *data/lakshadweepPLUS.RData
f27212073f7ffb6c558ad44c4c4a1edb *data/simberloff.RData
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e02fa2a78352ba2550b69f89f03dded4 *inst/doc/IBDmodels.html
541430a531ac5934ff67114b31b3ffa0 *inst/doc/detectability.R
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45dc6ee550f2a8b9e0310b4c06b0b193 *man/alonso15.Rd
e4779fa27374a070b0052ac4e25dca77 *man/cetotrans.Rd
19a1e1387e2ff57f99175f1a8499e6da *man/data_generation.Rd
d00a41c63e9858e9113c5ca8f5fde891 *man/ibd_models.Rd
2cdfb735aa94e90c7b35e902a28679bf *man/idaho.Rd
443737925dc7bd6b52ef4f71b06aa6a4 *man/irregular_multiple_datasets.Rd
720af05f20250eb416fa6fbb7adc0d66 *man/irregular_single_dataset.Rd
80c0072208562605e20251c0d69e0dee *man/island.Rd
e553ec991d6e2cc3d6948fcc3b008bcb *man/lakshadweep.Rd
0af627590cf676b6784d22183211572b *man/lakshadweepPLUS.Rd
215ff3b8f22461c189560491b1c40363 *man/mss_cedp.Rd
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d71e7bb2dfa69963aee9552d78a554c5 *man/weight_of_evidence.Rd
ea6dd72264f45e57ed7f62026de31c42 *src/Checking_for_Parameter_Correctness.c
f6b9704bcec0faca5bca3aaf8f78786e *src/Counting_Replicates_per_Time.c
5bb81c42a5679d466757547cbe91af84 *src/Counting_Type_of_Transitions.c
2e1fdb2f95551e583c2bcdba6dddb793 *src/Create_Binary_Combination.c
97a7e80aab77a396c89ef4d3648ceb72 *src/EUCLIDIAN_DISTANCE_MATRIX.c
cf73ccfb98d29512a846bbdf86ae390f *src/GSL_MacKenzie_NLL_Uneven_Function.c
41111c527bcd1703cad42c395493ae00 *src/GSL_MacKenzie_NLLikelihood_Function.c
022c755f6608be7418e4f533a9d7fff2 *src/GSL_Minimization_Simplex.c
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1dee3fe78c24757d9a944150b0597243 *src/IO_AKAIKE_Model_Selection.c
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7b33371245a80bd961e14c03aabcafaf *src/IO_Missing_Values.c
1a18ca886b011b7a439eb05a1ec05264 *src/IO_Missing_Values.h
8f081821e0249cd51af3e11c8b620273 *src/MODEL.h
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40078767c3ec4a461d3c41125fcbcbac *src/MacKenzie_NLLikelihood_Function.c
e334cd68551f0a817a9d6776ab81d659 *src/Makevars.in
0211568d3b13e190d057717fa5b15982 *src/Makevars.win
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5710853e187a039f73e956f25cf3cb41 *src/Parameter_Space_R_SHLIB.c
83ef950033846fb182fd8727ca7a1c48 *src/Probability_Rates.c
6cacb15d956a175437b4efa2739f2eb6 *src/R_SHLIB___mle_MacKenzie_NLL_Uneven_Minimization.c
1aae2b97c88f5fe82c76403c5125ec0e *src/R_SHLIB___mle_MacKenzie_NLLikelihood_Minimization.c
ad54c237f1dbe9559e195e1d8b0aae0d *src/R_SHLIB___mle_NLLikelihood_Minimization.c
4c400a03731cb5492f7499cf66ded05c *src/Rates_into_Probabilities.c
9288863ba44c64a5d2d730db92d22a1c *src/SP_Matrix_Data.c
62b43af4097038d5ef50fd6e4aceb477 *src/Time_Control.c
277d5ce8fa12e217206c68cbbac8f59e *src/Transition_Matrix.c
54eae56e07589d2e2439582f6153b263 *src/UPGMA_CLUSTERING_PARTITION.c
1296cd888e3e993f24da023a065bf95e *src/da_IBT_Functions.h
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e34585fcb5896ccb6ae0cd537ae91f97 *tests/testthat.R
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16c9be416966d154e779d03abe5f55cb *tests/testthat/g2.rds
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5657b7129b4a2190e40e8aed7a668a8c *tests/testthat/i1.rds
ac138b4d2bb1d3d4565581481aeb329e *tests/testthat/i2.rds
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11cb4fd8f464844404b3144e223464c1 *tests/testthat/test_environmental.R
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2b5077c8e0493ca960a3e901bd6910bd *tests/testthat/test_irregular.R
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0665cf0f32d97b516a9057ab0e811753 *vignettes/IBDmodels.Rmd
51cb2d93aa491ef77bf88051eb7ec344 *vignettes/detectability.Rmd
b5ff98ba6c5cb1111c869fd4e869a96b *vignettes/island.Rmd
