059cd3c191137bac3811826f2d150a20 *DESCRIPTION
7c6f00de73e883172577c15942df3e3a *NAMESPACE
d70287282e1c2b5beb06f3b7f63da807 *NEWS.md
d12dbb4ba3890cc82f501aa53e09dc2b *R/RcppExports.R
50b583eeac9cdd7933ba13b303e719ac *R/align_lineage.R
4432b7e9f28296212b31f921498ba355 *R/annotation.R
0006520aa0cc4f0720917b7d93f37012 *R/clonality.R
dfcec9e598a2b9984b07c98b06ae86c6 *R/clustering.R
5a6403680a01a390607d8f0cfa76e371 *R/data_docs.R
879f84ab1cbe14518906d9e5c1fafa66 *R/dimensions.R
ce42f47dc403fea0d1ca249ccec90930 *R/distance.R
56f049de1a73be0c7f0f2478e025058b *R/diversity.R
c19d02069b53db58e26a8e372014812e *R/dynamics.R
b0eed1e52fdfbb009e42be5142f4462a *R/explore.R
9ce7150a56886a8216a4ac72435956ab *R/filters.R
6796c3998de55164de5dd8ad52c7d5e3 *R/gene_usage.R
dd62e748e14b23742a65e2a5d4bfe64d *R/gene_usage_analysis.R
9403ba9dca818fb36bae2c463b6db028 *R/germline.R
cb42a9cce4e1b1de806b6c82d1d4d0ba *R/immunarch-package.R
21cd79d64aba80cec5994cb6dfa4d046 *R/immunr_data_format.R
b89f9e2dbbb6174dd5b36aa69891d742 *R/info_theory.R
4e7acd980568fe42878b605f1ba39b0e *R/io-parsers.R
554e64de8fcfaf410a65e1fa42bc35ec *R/io-savers.R
3a41baf7c53a0042e52fd980b74ee616 *R/io-utility.R
e8112b4f6e26ec861bf9f4a47cbce0e8 *R/io.R
bef2896c7be131d90079baa1588aeeb7 *R/kmers.R
12a5382700543cf1ec5c9e56ff59dffd *R/overlap.R
e13ef47c914b3ca35ee34cf5b367e970 *R/overlap_analysis.R
118c7b6a279ae1f712f3f70b65dea102 *R/phylip.R
f4c3ccc0637fbe68c3a961a2ba2fa886 *R/preprocessing.R
30152e7550bc10a54a75a7e0032dba3e *R/public.R
e7e2597f29983950ed067c1ae8f096ba *R/sampling.R
3875adb28da24ccf310ff32c4f3630ec *R/seqCluster.R
b7709daa8d3a1c3b1fcf8eddddf8defc *R/shiny.R
f5654b2cddac953ce4cdaab96ab57a67 *R/singlecell.R
14cddce2216afcc59758a4f958a003e2 *R/spectratyping.R
f07e153641f878606c6b81124988d407 *R/tools.R
aaac08099db6209e0d307faa87695584 *R/vis.R
6aeb7ee439a282faaed2b72ed3262eb7 *R/wip.R
5a5e8138627576340cea015d6757dbc9 *README.md
08669fca260accc4e257ff3ab2adefd0 *build/vignette.rds
00ae2aa3427adcc0d025a35ad5621d53 *data/aaproperties.rda
41f1fe3ccd68026d9821a7fe25f40238 *data/bcrdata.rda
ea5a2af608ae4caefa4bc532eda78d5c *data/genesegments.rda
9e42c72b10475df4177277725f4dab44 *data/immdata.rda
48f0443d189db0ba3d023b30f31dc417 *data/scdata.rda
349cc8cd59dadf0ed5f6c81ea35ac1a5 *inst/doc/v1_introduction.Rmd
04c687ab1185bc189d8551d9efb89b73 *inst/doc/v1_introduction.html
45ecea4def222be2a93c2ba45e850345 *inst/doc/v2_data.R
a27edfbc99f2537d5cb6cd320d857cb4 *inst/doc/v2_data.Rmd
dd52d1b64c5fe29c3710a6ff1a4a2687 *inst/doc/v2_data.html
332170ff9e10e7ccb5be6aeffc63d44c *inst/extdata/db/vdjdb.example.txt
c08390039a6e33fedd08342ba1b68071 *inst/extdata/io/Sample1.tsv.gz
b2a32ed785986eeb3094e86f22a40310 *inst/extdata/io/Sample2.tsv.gz
25f02ee5566a800604a1ef0a278461bd *inst/extdata/io/Sample3.tsv.gz
d4ae13e57fcf4c4b101a8cc8bbe8175d *inst/extdata/io/Sample4.tsv.gz
290577e5d5766171e1bfb7096bbcede8 *inst/extdata/io/metadata.txt
9e45583b294271871d1bd262d5629d44 *inst/extdata/sc/flu.csv.gz
53b91ddbe26edac8addd409f5dbb9320 *man/aa_properties.Rd
f597218a9d9fc0fd6faf26fecab3ed5e *man/aa_table.Rd
924ef9d8fe15384b27667215c0af6411 *man/add_class.Rd
14f09d34cca5323535c2a25d4fcd6228 *man/apply_symm.Rd
4fa4c75b6e162ba7aaf03a6ab0a19675 *man/bcrdata.Rd
81f5ca05da102629a899254a4755f594 *man/bunch_translate.Rd
2c4a4f079963b08604277951969d027d *man/check_distribution.Rd
ec1e96a7782444db62a8c42da3e6f8be *man/coding.Rd
2309ef2f82cc963571c55eacd3d98d03 *man/dbAnnotate.Rd
1f9d661a68b379946459249b34ed8447 *man/dbLoad.Rd
4575c5d24b842f2968a781f768ceeaba *man/dot-quant_column_choice.Rd
2fbc3e36c063e50fe33f3f5bf688ad91 *man/entropy.Rd
f5c3c1328575d7c9f1f7060f6270896a *man/fixVis.Rd
ff179d6fd1e0a8a3d0de2eb0dfdff6e3 *man/geneUsage.Rd
fffb92f8ce5be1bd1603de67a5891960 *man/geneUsageAnalysis.Rd
45157ce56d78957bd391a0a6058633e8 *man/gene_segments.Rd
f6eda2d1282b817e5176f754e15fc87e *man/gene_stats.Rd
c4d6216adee67a0e99b4785182dac54b *man/getKmers.Rd
86e96f0b1e3ac0220e00a1fd30cb5b7f *man/group_from_metadata.Rd
7e06128ecde5283a387f57242774fbab *man/has_class.Rd
0bacf1f2e2480bd24675f94af83073ee *man/immdata.Rd
77d33eba1525f55078039a15b6e5b320 *man/immunr_data_format.Rd
20fe71e4ff99a287f603da2a1e1a30c3 *man/immunr_hclust.Rd
b9f90f14607da3f3470b98d7abd4307a *man/immunr_pca.Rd
8f7c73f4046e4a1007603d07d0df1622 *man/inc_overlap.Rd
fe2739054688d2d28746d14ef8a1ac01 *man/matrixdiagcopy.Rd
23b5e592e1326ca90057c74cd020f60d *man/pubRep.Rd
39dc82fd97db7322e8cfebf4a2577170 *man/pubRepApply.Rd
c3e5adb3c16aa7ded4a2a09f3554bcdb *man/pubRepFilter.Rd
1299a7fe2857c8729e0ddd418ef25485 *man/pubRepStatistics.Rd
9ec63aa7bdd84f549ebf556c5669e3ca *man/public_matrix.Rd
de48be7c5c04c444e68021050c408307 *man/repAlignLineage.Rd
3b8d8fdfdf3206841d704d44750279b7 *man/repClonalFamily.Rd
1e8a7a4fd57dc12076232baa3988e336 *man/repClonality.Rd
8d2ffe04194e46ac78395c4930619bbf *man/repDiversity.Rd
e905c8d848256e411ab2f9b44d6539e9 *man/repExplore.Rd
bf2a00847988a8ea180be597c9bc6a92 *man/repFilter.Rd
42421622c836707bc137ae0c4637964a *man/repGermline.Rd
260d6937ab05b7e54493f93d488a62df *man/repLoad.Rd
d3ef7bf6e94b1fb7608d767cce17766a *man/repOverlap.Rd
16047e62db31eab46cd89170bc78a1e9 *man/repOverlapAnalysis.Rd
9d1d6d6e8148bc1a023b3370bcc4003d *man/repSample.Rd
da893473450fd2661099b20f0b199e52 *man/repSave.Rd
6a40a253b58f643a5ea5dc80650b76de *man/scdata.Rd
f462d7c3a3f47d4e0ddb314380c3afb4 *man/select_barcodes.Rd
728d8cde75a601a84e7aa85e862874ca *man/select_clusters.Rd
6441bc3df2d6b0a8c44e87c535867a3c *man/seqCluster.Rd
3fa5925e36ddd916ccc193542b7d630e *man/seqDist.Rd
12c1a574d119c90c76e1138fe85e2afb *man/set_pb.Rd
e8ed942278353fe14dc2d8f26519ec6f *man/spectratype.Rd
e9b57a2340c18689f2d157f4f32f517e *man/split_to_kmers.Rd
0c83d34e2f24a04339acc715c27389f6 *man/switch_type.Rd
87f0f4872d80df4b71570250463cdc3c *man/top.Rd
6adf1399e1770ffbf1b890126f761447 *man/trackClonotypes.Rd
2990c10057fba4d56b75115628a27e52 *man/vis.Rd
4e2fa36013bab8c255c7e3fe76208da1 *man/vis.immunr_chao1.Rd
dde8871b1a9518aa0f06f1389c11a5f7 *man/vis.immunr_clonal_prop.Rd
912f613aab8ed5bccb32a12fd4f7fe14 *man/vis.immunr_dynamics.Rd
a665bcceee85ab3a00922a1d9fc5f22b *man/vis.immunr_exp_vol.Rd
7b2e9aa1c9521570d9c242e15972fbd4 *man/vis.immunr_gene_usage.Rd
63a25860050e649a6b48406f8165e94b *man/vis.immunr_hclust.Rd
73c25761223a38ab72858bcb1b13732f *man/vis.immunr_inc_overlap.Rd
6d0764463f713de6d9a3c8f0ea7c101c *man/vis.immunr_kmeans.Rd
8e46717089fb78bf6239b1e7539ada3b *man/vis.immunr_kmer_table.Rd
4cc5526a5cb543bdc8b676ab98370245 *man/vis.immunr_mds.Rd
61c843a7a1d4097a6a13a55e7a9ca6b7 *man/vis.immunr_ov_matrix.Rd
114250f1b05587ac5a0f1431283ca728 *man/vis.immunr_public_repertoire.Rd
39f37e977cf5c2c3b93ef382aab1808e *man/vis.immunr_public_statistics.Rd
d92659c027dd37bde851804e907aba9b *man/vis_bar.Rd
37cb141bbe686e29283a98734a2d99ec *man/vis_box.Rd
1a1d65b28d60e2f8c23bf320a6dbb8b2 *man/vis_circos.Rd
42ba90806948d5541442e762c2aebe2d *man/vis_heatmap.Rd
f62e755043afd1953d14f39576b2116c *man/vis_heatmap2.Rd
5a3c19b48f1b6a06a02241e3bc5eb8da *man/vis_hist.Rd
f02b92a6502c4f7ace2b64e62247c606 *man/vis_immunr_kmer_profile_main.Rd
56585d15ae08c637aef49b2502f387bb *man/vis_public_clonotypes.Rd
5e29f8e01adce70da51f22a7a93fcdc7 *man/vis_public_frequencies.Rd
88a66c8d825ba4617d1053e672ad639c *man/vis_textlogo.Rd
69ea319e04809ad4052cd8ec680c0868 *src/RcppExports.cpp
d6fe6d2e88a8bda3a957fe8efaddc9cf *src/fill_functions.cpp
349cc8cd59dadf0ed5f6c81ea35ac1a5 *vignettes/v1_introduction.Rmd
a27edfbc99f2537d5cb6cd320d857cb4 *vignettes/v2_data.Rmd
f5e2ade1a7dc6dcce958d011780fc8ce *vignettes/web_only/community.Rmd
c3dc92e34f25a4e0e70a81904e51b631 *vignettes/web_only/load_10x.Rmd
ea42101ee628e1c1ee5c8aaaae2315ba *vignettes/web_only/load_mixcr.Rmd
324962fb9f50acde2e5ce931869cd76b *vignettes/web_only/repFilter_v3.Rmd
0fa33a2f4defc58e39f0edbadc3a98c5 *vignettes/web_only/v10_prop.Rmd
9a96cff57261cedf61f836ae879aa850 *vignettes/web_only/v11_db.Rmd
b94338337cd90054b0d7ad0f48b5ee7d *vignettes/web_only/v21_singlecell.Rmd
9e911096c23a9c520f5719b0e3e14a03 *vignettes/web_only/v3_basic_analysis.Rmd
603606e2cffb0177c5dfc7eaf61edeef *vignettes/web_only/v4_overlap.Rmd
bd22c92f93cd93eca646b029cd0465ee *vignettes/web_only/v5_gene_usage.Rmd
4d056cd090013f615ac795361475c0f6 *vignettes/web_only/v6_diversity.Rmd
cec19a992bad6d07a18af38d8d37d453 *vignettes/web_only/v7_fixvis.Rmd
447fcbf0bff5247462f3653c1cb33378 *vignettes/web_only/v8_tracking.Rmd
551f115f966fa31efd784d1b7a0ffc92 *vignettes/web_only/v9_kmers.Rmd
