7fdb2bedb9ac071d4d46c5d1152aed96 *DESCRIPTION
7c6f00de73e883172577c15942df3e3a *NAMESPACE
d70287282e1c2b5beb06f3b7f63da807 *NEWS.md
d12dbb4ba3890cc82f501aa53e09dc2b *R/RcppExports.R
95e5b82d9c6bd85a0eba68ff964029d6 *R/align_lineage.R
4432b7e9f28296212b31f921498ba355 *R/annotation.R
afc16a6657654aaee6640c4dcfcfa941 *R/clonality.R
0f535e2a931a7c8c129440ceb6e74444 *R/clustering.R
6e0562067e4e4dec0042c25543abc01e *R/data_docs.R
60cdee302c36094feb0916c1a24baf93 *R/dimensions.R
74ca072a842baff59972770e8b63576e *R/distance.R
932f185af7e1046e2467c1d3bd648570 *R/diversity.R
cd2223d6f2c2bf4b00233b3eea58b872 *R/dynamics.R
b0eed1e52fdfbb009e42be5142f4462a *R/explore.R
2cb4c3d25db381357f310c36cdfed678 *R/filters.R
5ca8945448ccde598a8ecadb3d479889 *R/gene_usage.R
dd62e748e14b23742a65e2a5d4bfe64d *R/gene_usage_analysis.R
33d8a95a8e17be5e4e19ce80a9ff5d65 *R/germline.R
cb42a9cce4e1b1de806b6c82d1d4d0ba *R/immunarch-package.R
21cd79d64aba80cec5994cb6dfa4d046 *R/immunr_data_format.R
af967de6027c26a3d289e6a9923d94ae *R/info_theory.R
67aa6042d2a7f4c92e34d77647bf1072 *R/io-parsers.R
554e64de8fcfaf410a65e1fa42bc35ec *R/io-savers.R
e941cb429aec51ce8b006e1812076dbe *R/io-utility.R
03e7b6b9a5e8b4eca117f1465eed1c3c *R/io.R
affef64bc56bb12707ad3038dff08754 *R/kmers.R
945b9c99b2c43fe53d2d571b1f73b782 *R/overlap.R
36a5f855deed9a9ef2b03fe3a46f8b8b *R/overlap_analysis.R
d2c2cd65bd29394a3b19cd9d92362053 *R/phylip.R
f4c3ccc0637fbe68c3a961a2ba2fa886 *R/preprocessing.R
6aba3a05b7a9957035b66d106ccdf36e *R/public.R
7f0b80956a0efc42c9bf3462557634ba *R/sampling.R
c55dc31cf0504b2ad0af01d8ec2ebf78 *R/seqCluster.R
17435b8314415ceea4d36b7fbe7c57ec *R/shiny.R
262a14fe09184543878fd3a0d343292d *R/singlecell.R
a8b3c34abd628a71db7f714f1b7b5998 *R/spectratyping.R
9bfd37e7e62bf64a387bbf06f80968ae *R/tools.R
07d0e187339790ec907dab4295872121 *R/vis.R
6aeb7ee439a282faaed2b72ed3262eb7 *R/wip.R
5a5e8138627576340cea015d6757dbc9 *README.md
08669fca260accc4e257ff3ab2adefd0 *build/vignette.rds
00ae2aa3427adcc0d025a35ad5621d53 *data/aaproperties.rda
41f1fe3ccd68026d9821a7fe25f40238 *data/bcrdata.rda
ea5a2af608ae4caefa4bc532eda78d5c *data/genesegments.rda
9e42c72b10475df4177277725f4dab44 *data/immdata.rda
48f0443d189db0ba3d023b30f31dc417 *data/scdata.rda
349cc8cd59dadf0ed5f6c81ea35ac1a5 *inst/doc/v1_introduction.Rmd
04c687ab1185bc189d8551d9efb89b73 *inst/doc/v1_introduction.html
45ecea4def222be2a93c2ba45e850345 *inst/doc/v2_data.R
a27edfbc99f2537d5cb6cd320d857cb4 *inst/doc/v2_data.Rmd
5ff96275611adaabc10f01916e74cc8e *inst/doc/v2_data.html
332170ff9e10e7ccb5be6aeffc63d44c *inst/extdata/db/vdjdb.example.txt
c08390039a6e33fedd08342ba1b68071 *inst/extdata/io/Sample1.tsv.gz
b2a32ed785986eeb3094e86f22a40310 *inst/extdata/io/Sample2.tsv.gz
25f02ee5566a800604a1ef0a278461bd *inst/extdata/io/Sample3.tsv.gz
d4ae13e57fcf4c4b101a8cc8bbe8175d *inst/extdata/io/Sample4.tsv.gz
290577e5d5766171e1bfb7096bbcede8 *inst/extdata/io/metadata.txt
9e45583b294271871d1bd262d5629d44 *inst/extdata/sc/flu.csv.gz
53b91ddbe26edac8addd409f5dbb9320 *man/aa_properties.Rd
f597218a9d9fc0fd6faf26fecab3ed5e *man/aa_table.Rd
924ef9d8fe15384b27667215c0af6411 *man/add_class.Rd
14f09d34cca5323535c2a25d4fcd6228 *man/apply_symm.Rd
c2ce905a9a5bdbf0185c39e100abca70 *man/bcrdata.Rd
81f5ca05da102629a899254a4755f594 *man/bunch_translate.Rd
f98ef5d9c10cbd3256791d636cc639bb *man/check_distribution.Rd
ec1e96a7782444db62a8c42da3e6f8be *man/coding.Rd
2309ef2f82cc963571c55eacd3d98d03 *man/dbAnnotate.Rd
1f9d661a68b379946459249b34ed8447 *man/dbLoad.Rd
4575c5d24b842f2968a781f768ceeaba *man/dot-quant_column_choice.Rd
dedd449bf88a4fab8957dda48dbde458 *man/entropy.Rd
605ee83f041b9510bd2b56a057554908 *man/fixVis.Rd
811ae91b089135aa7b38eb515becbe95 *man/geneUsage.Rd
fffb92f8ce5be1bd1603de67a5891960 *man/geneUsageAnalysis.Rd
45157ce56d78957bd391a0a6058633e8 *man/gene_segments.Rd
f6eda2d1282b817e5176f754e15fc87e *man/gene_stats.Rd
81c9795e88b035899b55a6376092292f *man/getKmers.Rd
86e96f0b1e3ac0220e00a1fd30cb5b7f *man/group_from_metadata.Rd
7e06128ecde5283a387f57242774fbab *man/has_class.Rd
cda534d26907efb4c11a8bab4fd637cb *man/immdata.Rd
77d33eba1525f55078039a15b6e5b320 *man/immunr_data_format.Rd
ff0ae1010e4eaffc19482529bf63f0f6 *man/immunr_hclust.Rd
ed93cb196a99cc3525cf23247b5e8d5e *man/immunr_pca.Rd
eb2ee0dfa1d5132a903df269bf92a289 *man/inc_overlap.Rd
fe2739054688d2d28746d14ef8a1ac01 *man/matrixdiagcopy.Rd
0f05f923cfd82e1f992dc0cf3e210dfa *man/pubRep.Rd
39dc82fd97db7322e8cfebf4a2577170 *man/pubRepApply.Rd
312ad45a20747cde58d95ceecb415b4e *man/pubRepFilter.Rd
1299a7fe2857c8729e0ddd418ef25485 *man/pubRepStatistics.Rd
9ec63aa7bdd84f549ebf556c5669e3ca *man/public_matrix.Rd
7b4f84bb80707c1dae5b770686b8e374 *man/repAlignLineage.Rd
1b743c5193a1a9e636345272e077358d *man/repClonalFamily.Rd
db05e114fc43298534ebc87bc21abb6c *man/repClonality.Rd
7e036fb078439faaf31243fdf58a28cd *man/repDiversity.Rd
e905c8d848256e411ab2f9b44d6539e9 *man/repExplore.Rd
ca3bc956bbdd85fd1881e9e13b8df209 *man/repFilter.Rd
7d9e6c6712888d46337bbbfc16fef42d *man/repGermline.Rd
84738b4d08dd898d6dc7ed71a276735d *man/repLoad.Rd
b86d15f42d692fe8b6fc02c758e465fa *man/repOverlap.Rd
845b3bb0671562cef45b24e2618dba9f *man/repOverlapAnalysis.Rd
fa38125daa87ab21cad773afea3125c1 *man/repSample.Rd
da893473450fd2661099b20f0b199e52 *man/repSave.Rd
91af2438b93561b31bd35a2e13725504 *man/scdata.Rd
bce5e2b13a2b3e88d267027e96d1498a *man/select_barcodes.Rd
26587f691eb83b4c59bbbf73d76e370e *man/select_clusters.Rd
43dbd24cad09b5ce1ec2ad689fcd35f5 *man/seqCluster.Rd
f3363c96de85a6beb6c83464227b30f3 *man/seqDist.Rd
12c1a574d119c90c76e1138fe85e2afb *man/set_pb.Rd
d07d11652253e36b6a620b26c11d7f8b *man/spectratype.Rd
a8cf365bac554e27d997e48bbb7082f8 *man/split_to_kmers.Rd
c83a424b534c0331ec2cfd845394f107 *man/switch_type.Rd
87f0f4872d80df4b71570250463cdc3c *man/top.Rd
76432d4d8394e7d65998a3d6a6a141f9 *man/trackClonotypes.Rd
2990c10057fba4d56b75115628a27e52 *man/vis.Rd
4e2fa36013bab8c255c7e3fe76208da1 *man/vis.immunr_chao1.Rd
dde8871b1a9518aa0f06f1389c11a5f7 *man/vis.immunr_clonal_prop.Rd
912f613aab8ed5bccb32a12fd4f7fe14 *man/vis.immunr_dynamics.Rd
a665bcceee85ab3a00922a1d9fc5f22b *man/vis.immunr_exp_vol.Rd
7b2e9aa1c9521570d9c242e15972fbd4 *man/vis.immunr_gene_usage.Rd
63a25860050e649a6b48406f8165e94b *man/vis.immunr_hclust.Rd
73c25761223a38ab72858bcb1b13732f *man/vis.immunr_inc_overlap.Rd
6d0764463f713de6d9a3c8f0ea7c101c *man/vis.immunr_kmeans.Rd
8e46717089fb78bf6239b1e7539ada3b *man/vis.immunr_kmer_table.Rd
4cc5526a5cb543bdc8b676ab98370245 *man/vis.immunr_mds.Rd
587d294979b6bdcefd0b3b0abe91f7d3 *man/vis.immunr_ov_matrix.Rd
114250f1b05587ac5a0f1431283ca728 *man/vis.immunr_public_repertoire.Rd
39f37e977cf5c2c3b93ef382aab1808e *man/vis.immunr_public_statistics.Rd
d92659c027dd37bde851804e907aba9b *man/vis_bar.Rd
37cb141bbe686e29283a98734a2d99ec *man/vis_box.Rd
1a1d65b28d60e2f8c23bf320a6dbb8b2 *man/vis_circos.Rd
4771da41fb1e7ac8f71e16f06bb68c89 *man/vis_heatmap.Rd
31de86a1ae0331d801fc521dc937bfa2 *man/vis_heatmap2.Rd
5a3c19b48f1b6a06a02241e3bc5eb8da *man/vis_hist.Rd
f02b92a6502c4f7ace2b64e62247c606 *man/vis_immunr_kmer_profile_main.Rd
56585d15ae08c637aef49b2502f387bb *man/vis_public_clonotypes.Rd
5e29f8e01adce70da51f22a7a93fcdc7 *man/vis_public_frequencies.Rd
88a66c8d825ba4617d1053e672ad639c *man/vis_textlogo.Rd
69ea319e04809ad4052cd8ec680c0868 *src/RcppExports.cpp
d6fe6d2e88a8bda3a957fe8efaddc9cf *src/fill_functions.cpp
349cc8cd59dadf0ed5f6c81ea35ac1a5 *vignettes/v1_introduction.Rmd
a27edfbc99f2537d5cb6cd320d857cb4 *vignettes/v2_data.Rmd
f5e2ade1a7dc6dcce958d011780fc8ce *vignettes/web_only/community.Rmd
c3dc92e34f25a4e0e70a81904e51b631 *vignettes/web_only/load_10x.Rmd
ea42101ee628e1c1ee5c8aaaae2315ba *vignettes/web_only/load_mixcr.Rmd
324962fb9f50acde2e5ce931869cd76b *vignettes/web_only/repFilter_v3.Rmd
0fa33a2f4defc58e39f0edbadc3a98c5 *vignettes/web_only/v10_prop.Rmd
9a96cff57261cedf61f836ae879aa850 *vignettes/web_only/v11_db.Rmd
b94338337cd90054b0d7ad0f48b5ee7d *vignettes/web_only/v21_singlecell.Rmd
9e911096c23a9c520f5719b0e3e14a03 *vignettes/web_only/v3_basic_analysis.Rmd
603606e2cffb0177c5dfc7eaf61edeef *vignettes/web_only/v4_overlap.Rmd
bd22c92f93cd93eca646b029cd0465ee *vignettes/web_only/v5_gene_usage.Rmd
4d056cd090013f615ac795361475c0f6 *vignettes/web_only/v6_diversity.Rmd
cec19a992bad6d07a18af38d8d37d453 *vignettes/web_only/v7_fixvis.Rmd
447fcbf0bff5247462f3653c1cb33378 *vignettes/web_only/v8_tracking.Rmd
551f115f966fa31efd784d1b7a0ffc92 *vignettes/web_only/v9_kmers.Rmd
