Package: hsrecombi
Type: Package
Title: Estimation of Recombination Rate and Maternal LD in Half-Sibs
Version: 0.3.0
Authors@R: c(person("Dörte","Wittenburg", role = c("aut", "cre"), 
    email = "wittenburg@fbn-dummerstorf.de"))
Description: Paternal recombination rate and maternal linkage disequilibrium 
    (LD) are estimated for pairs of biallelic markers such as single nucleotide 
    polymorphisms (SNPs) from progeny genotypes and sire haplotypes. At least 
    one sire has to be double heterozygous at the investigated pairs of SNPs.
    The implementation relies on paternal half-sib families. If maternal half-
    sib families are used, the roles of sire/dam are swapped. Multiple families 
    can be considered.
    Hampel, Teuscher, Gomez-Raya, Doschoris, Wittenburg (2018) "Estimation of 
    recombination rate and maternal linkage disequilibrium in half-sibs" 
    <doi:10.3389/fgene.2018.00186>.
    Gomez-Raya (2012) "Maximum likelihood estimation of linkage disequilibrium 
    in half-sib families" <doi:10.1534/genetics.111.137521>.
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 1.0.3), hsphase, dplyr, data.table, rlist, quadprog
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
LinkingTo: Rcpp
RoxygenNote: 7.0.2
NeedsCompilation: yes
Packaged: 2020-05-28 07:51:25 UTC; wittenburg
Author: Dörte Wittenburg [aut, cre]
Maintainer: Dörte Wittenburg <wittenburg@fbn-dummerstorf.de>
Repository: CRAN
Date/Publication: 2020-05-28 09:00:03 UTC
