2004-02-02 11:26  warnes

	* R/colorpanel.R, man/colorpanel.Rd:
	  - Add colorpanel function, which generates a smoothly varying
	  band of   colors over a three color range (lo, mid, high).

2004-02-02 11:21  warnes

	* DESCRIPTION: Update version number for new release.

2004-01-21 07:10  warnes

	* TODO: Add TODO to contain 'to do' list.

2004-01-21 07:07  warnes

	* man/textplot.Rd: - Correct arguments to halign to match code.

2004-01-21 07:06  warnes

	* R/reorder.R, man/reorder.Rd: - Add ... argument to match generic
	  provided in mva.

2004-01-21 00:17  warnes

	* R/lowess.R: Track R 1.9.0's move of 'lowess' from the base
	  package to the (new) stats package.

2004-01-20 23:48  warnes

	* DESCRIPTION: Updated for 0.8.8 release.

2004-01-20 23:44  warnes

	* man/sinkplot.Rd: - Fix sinkplot() example by replacing 'T' with
	  'TRUE'.

2004-01-20 23:42  warnes

	* man/ooplot.Rd: - Add some more details to the ooplot()
	  documentation.  The	documentation is *not* complete.

2004-01-20 23:31  warnes

	* R/: capture.R, textplot.R: - Mark sprint() as depreciated.  -
	  Replace references to sprint with capture.output() - Use
	  match.arg for halign and valign arguments to textplot.default.  -
	  Fix textplot.character so that a vector of characters is properly
	  displayed. Previouslt, character vectors were plotted on top of
	  each	 other.

2004-01-19 18:43  warnes

	* R/sinkplot.R, man/sinkplot.Rd:
	  New function sinkplot(), as requested on R-devel by Kevin Wright
	  <kwright@eskimo.com> in
	  https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html.

2004-01-19 17:45  warnes

	* R/elem.R, R/env.R, R/ll.R, man/keep.Rd, man/ll.Rd: - Integrated
	  (partial) patch submitted by Arni Magnusson to clarify help text.
	  - Modifed code to use match.arg().

2004-01-15 00:14  warnes

	* R/ooplot.R, man/ooplot.Rd:
	  Add initial code and docs for ooplot() function submitted by
	  Lodewijk Bonebakker <bonebakker@comcast.net>.

2003-12-15 16:07  warnes

	* R/env.R:
	  - Applied patch from Arni that fixed a bug that caused env() to
	  crash   if any environment was completely empty

2003-12-02 21:49  warnes

	* DESCRIPTION:
	  - Updated for version 0.8.7

2003-12-02 21:47  warnes

	* tests/: ci.Rout.save, fit.contrast-2003-11-17-UH.R,
	  fit.contrast-2003-11-17-UH.Rout.save:
	  - minor fixes

2003-12-02 21:46  warnes

	* man/: elem.Rd, foldchange.Rd, ll.Rd, lowess.Rd, textplot.Rd,
	  wapply.Rd: - match function argument defaults with 'usage'

2003-12-02 21:42  warnes

	* R/heatmap.2.R, man/heatmap.2.Rd:
	  - Fix buglets in heatmap function - Make a slight enhancement to
	  the example code.

2003-12-02 17:49  warnes

	* R/heatmap.2.R:
	  Integrated some suggestions from Sean Davis
	  <sdavis2@mail.nih.gov>.

2003-12-02 13:22  warnes

	* man/heatmap.2.Rd: - Make final example use 16 colors instead of
	  8.  This looks nicer.

2003-12-02 12:45  warnes

	* tests/fit.contrast-2003-11-17-UH.Rout.save:
	  - Remove no-longer-present warning on loading the gregmisc
	  package.

2003-12-02 12:09  warnes

	* tests/: ci.Rout.save, fit.contrast-2003-11-17-UH.Rout.save:
	  - Updated ci.R test output to match results under R-1.8.  -
	  Corrected fit.contrasts-2003-11.17-UH.R test output.

2003-12-02 12:00  warnes

	* man/ll.Rd:
	  Add one argument, to match code.

2003-12-02 11:58  warnes

	* man/barplot2.Rd:
	  - Remove '%' character from example code to avoid errors.

2003-12-02 11:54  warnes

	* R/plotCI.R:
	  - Add '...' parameter to call to text to allow user to control
	  size/color/etc.

2003-12-01 11:00  warnes

	* man/barplot2.Rd:
	  - updated to match changes to barplot() in base.

2003-12-01 10:59  warnes

	* data/: rtPCR.Rda, rtPCR.rda:
	  - Renamed rtPCR.Rda to rtPCR.rda so that R will properly load the
	  file	 when data(rtPCR) is executed.

2003-12-01 10:56  warnes

	* R/: elem.R, env.R, is.what.R, keep.R, ll.R:
	  - Apply changes submitted by Arni Magnusson

2003-12-01 10:55  warnes

	* R/barplot2.R:
	  - Follow patches applied to barplot() in base.

2003-11-24 16:32  warnes

	* man/heatmap.2.Rd:
	  Fix unbalanced braces.

2003-11-24 10:11  warnes

	* DESCRIPTION:
	  Updated for release.

2003-11-24 10:09  warnes

	* R/overplot.R, man/overplot.Rd:
	  Fix errors reported by R CMD check.

2003-11-21 18:13  warnes

	* man/overplot.Rd:
	  Added missing closing brace.

2003-11-21 18:08  warnes

	* data/rtPCR.Rda, man/rtPCR.Rd:
	  Initial addition of these files.  Used in examples of overplot().

2003-11-21 18:00  warnes

	* man/foldchange.Rd:
	  Removed 'deqn' call that was confusing things.

2003-11-21 17:59  warnes

	* R/heatmap.2.R, man/heatmap.2.Rd:
	  Applied my enhancements to the heatmap() code from R 1.8.0, and
	  added documentation of these changes.

2003-11-21 17:58  warnes

	* R/overplot.R, man/overplot.Rd:
	  - Discovered that axis(N) does the right thing without needing to
	  be   given location for tick marks.  This allowed simplification
	  of the code.

	  - Minor other changes for distribution

	  - Addition of overplot.Rd documentation.

2003-11-21 15:54  warnes

	* man/logit.Rd: Add email address to author field

2003-11-21 15:35  warnes

	* R/foldchange.R, man/foldchange.Rd:
	  - new files

2003-11-21 14:55  warnes

	* tests/fit.contrast-2003-11-17-UH.Rout.save:
	  Updated correct output.

2003-11-21 14:54  warnes

	* R/mixedsort.R, man/mixedsort.Rd:
	  - Change 'T' to 'TRUE' in mixedsort.R - Add missing brace in
	  mixedsort.Rd

2003-11-21 14:50  warnes

	* R/heatmap.2.R, man/heatmap.2.Rd:
	  - Integrated my extensions into the R 1.8.0 version of heatmap.
	  - Add Rd documentation.

2003-11-20 10:56  warnes

	* R/oddeven.R, man/oddeven.Rd:
	  - Move 'odd' and 'even' functions to a separate file & provide
	  documentation

2003-11-19 09:54  warnes

	* man/: env.Rd, is.what.Rd, keep.Rd, ll.Rd:
	  Changes to pass R CMD check.

2003-11-19 09:52  warnes

	* man/bandplot.Rd:
	  Remove extranious NULL that confused R CMD check.

2003-11-18 17:47  warnes

	* R/mixedsort.R, R/smartsort.R, man/mixedsort.Rd:
	  - Renamed smartsort to mixedsort and added documentation.

2003-11-18 13:59  warnes

	* man/barplot2.Rd:
	  - Tiny fix to remove R CMD check error.

2003-11-18 13:58  warnes

	* man/smartlegend.Rd:
	  - Added missing closing brace.

2003-11-18 13:45  warnes

	* R/: elem.R, env.R, is.what.R, keep.R, ll.R, overplot.R:
	  - Convert from MS-Dos to Unix line endings.  - Reformat to 80
	  columns.

2003-11-17 17:09  warnes

	* man/elem.Rd: Replace 'T' with 'TRUE' to remove R CMD check error.

2003-11-17 17:09  warnes

	* man/aggregate.table.Rd: Fix syntax error.

2003-11-17 16:40  warnes

	* R/fit.contrast.R, tests/fit.contrast-2003-11-17-UH.R,
	  tests/fit.contrast-2003-11-17-UH.Rout.save:
	  - Fix incorrect handling of glm objects by fit.contrast, as
	  reported   by Ulrich Halekoh, Phd <ulrich.halekoh@agrsci.dk>.

	  - Add regression test code to for this bug.

2003-11-10 17:11  warnes

	* DESCRIPTION, R/capture.R, R/elem.R, R/env.R, R/heatmap.2.R,
	  R/is.what.R, R/keep.R, R/ll.R, R/overplot.R, R/plotmeans.R,
	  R/smartsort.R, R/space.R, R/wapply.R, R/zzz.R, man/capture.Rd,
	  man/elem.Rd, man/env.Rd, man/is.what.Rd, man/keep.Rd, man/ll.Rd:
	  - Add files contributed by Arni Magnusson
	  <arnima@u.washington.edu>. As well as some of my own.

2003-08-19 10:58  warnes

	* R/heatmap.2.R:
	  - Copy of local changes.

2003-08-19 10:57  warnes

	* R/heatmap.2.R:
	  - Checkin before re-integrating local changes.

2003-08-06 23:49  warnes

	* R/ci.R: - Fixed incorrect denominator in standard error for mean
	  in ci.default.

2003-06-19 17:23  warnes

	* R/heatmap.2.R:
	  - Added enhanced heatmap function.

2003-06-09 11:10  warnes

	* man/smartlegend.Rd:
	  - Add help text for smartlegend.

2003-06-09 10:57  warnes

	* R/smartlegend.R: - New function smartlegend().

2003-06-07 13:58  warnes

	* man/: aggregate.table.Rd, interleave.Rd:
	  - Fixed error in examples.  Had sqrt(var(x)/(n-1)) for the
	  standard   error of the mean instead of sqrt(var(x)/n).

2003-05-28 22:43  warnes

	* R/library.R, man/library.Rd:
	  - Removed library() function.  It is not needed here and will be
	  released properly as part of 1.8.0.

2003-05-23 14:32  warnes

	* R/matchcols.R, man/matchcols.Rd:
	  - Fixed typos

2003-05-23 14:14  warnes

	* R/library.R, R/logit.R, R/matchcols.R, R/zzz.R, man/library.Rd,
	  man/logit.Rd, man/matchcols.Rd, man/undocumented.Rd:
	  - library() backported from 1.7-devel.  This version of the
	  function   adds the "pos=" argument to specify where in the
	  search path the   library should be placed.

	  - updated .First.lib to use library(...pos=3) for MASS to avoid
	  the	'genotype' data set in MASS from masking the genotype
	  funciton in	genetics when it loads gregmisc

	  - Added logit() inv.logit() matchcols() function and
	  corresponding docs

2003-05-20 12:03  warnes

	* R/interleave.R:
	  - Omit NULL variables.

2003-05-20 09:16  warnes

	* DESCRIPTION, R/trim.R, man/trim.Rd:
	  - Added function trim() and assocated docs.

2003-04-22 14:39  warnes

	* tests/fast.prcomp.Rout.save:
	  - One more try.

2003-04-22 14:29  warnes

	* DESCRIPTION:
	  - Update version number.

2003-04-22 14:29  warnes

	* tests/: fast.prcomp.R, fast.prcomp.Rout.save,
	  fit.contrast.Rout.save, plotmeans.Rout.save:
	  - Modified fast.prcomp.R to test data rather than timings.  -
	  Added fast.prcomp.R output to CVS.  - fit.contrast.R to generate
	  a warning message and fail to display one   column.  -
	  plotmeans.R used to generate a warning message.

2003-04-22 13:39  warnes

	* tests/: CrossTable.Rout.save, aggregate.table.Rout.save,
	  bandplot.Rout.save, barplot2.Rout.save, boxplot.n.Rout.save,
	  ci.Rout.save, combinations.Rout.save, combine.Rout.save,
	  dirichlet.Rout.save, estimable.Rout.save, factorial.Rout.save,
	  fit.contrast.Rout.save, glh.test.Rout.save, hist2d.Rout.save,
	  interleave.Rout.save, lowess.Rout.save, make.contrasts.Rout.save,
	  nobs.Rout.save, plotCI.Rout.save, plotmeans.Rout.save,
	  quantcut.Rout.save, rename.vars.Rout.save, reorder.Rout.save,
	  running.Rout.save, space.Rout.save, wapply.Rout.save:
	  - R 1.7.0 changed the default random number generator.  This
	  caused   all examples which used randomly generated data to
	  differ.  This   change the old data with new data generated under
	  1.7.0.

2003-04-22 13:28  warnes

	* R/plotmeans.R:
	  - Fixeed warning messing caused when 'connect' is a vector.

2003-04-22 13:24  warnes

	* R/fit.contrast.R:
	  - the variable 'df' was used within the lme code section
	  overwriting	the argument 'df'.

2003-04-22 12:00  warnes

	* man/combinations.Rd: - Fixed tpyo in example that allowed
	  combinations(500,2) to run when   it should have been ignred for
	  testing..

2003-04-22 11:42  warnes

	* R/reorder.R, man/reorder.Rd:
	  - The mva package (which is part of recommended) now provides a
	  generic 'reorder' function.  Consequently, the 'reorder' function
	    here has been renamed to 'reorder.factor'.

	  - Removed check of whether the argument is a factor object.

2003-04-22 11:34  warnes

	* R/barplot2.R: Update from Marc Schwartz, modified by Gregory
	  Warnes:

	  -  Modified dim() checks for 'ci.l' and 'ci.u' against 'height'
	   to remove R v1.7.0 if() based error msgs for vector conditions.

2003-04-22 11:13  warnes

	* R/zzz.R:
	  - Updated .First.lib() to load mva before MASS, this should
	  correct   problems when library(gregmisc) is in .Rprofile.

2003-04-10 12:22  warnes

	* man/combinations.Rd:
	  - Added note about the need to increase options("expressions") to
	  use	large values for 'n'.  Prompted by bug report from Huan
	  Huang   <huan.huang@bnpparibas.com

2003-04-04 08:59  warnes

	* DESCRIPTION:
	  - Version 0.8.3

2003-04-04 08:58  warnes

	* R/RSCompat.S:
	  - Replace 'T' with 'TRUE'

2003-04-04 08:49  warnes

	* R/balloonplot.R, R/dirichlet.R, man/qqnorm.aov.Rd:
	  - Change occurences of 'T' to 'TRUE'

2003-04-04 08:46  warnes

	* man/capture.Rd:
	  - Allow optional arguments to sprint to be passed to print - Fix
	  R CMD check errors

2003-04-04 08:45  warnes

	* R/capture.R:
	  - Allow optional arguments to sprint to be passed to print

2003-04-04 08:44  warnes

	* man/textplot.Rd:
	  - Updated to match changes in textplot function:   - Added
	  textplot.character   - Renamed arguments "col.margin" and
	  "row.margin" to "cmar", and	  "rmar" so that specifying
	  "col='red'" is possible.  - Fixed R CMD check errors - Improve
	  comments in example - Add textplot.matrix example

2003-04-04 08:41  warnes

	* R/textplot.R:

	  - Added textplot.character to handle character strings.  - Moved
	  test for vector and matrix arguments to textplot.default.  -
	  Renamed arguments "col.margin" and "row.margin" to "cmar", and
	  "rmar" so that specifying "col='red'" is possible.

2003-04-03 08:20  warnes

	* man/capture.Rd:
	  - Had mistyped 'sprint' as 'sprintf'.

2003-04-03 08:18  warnes

	* man/capture.Rd: - Add help file for capture and sprintf.

2003-04-02 17:29  warnes

	* R/textplot.R, man/textplot.Rd:
	  - Added textplot function and friends, as well as documentation.

2003-04-02 17:28  warnes

	* R/capture.R:
	  - Added file 'capture.R' containing capture() and sprint().

2003-03-12 12:58  warnes

	* man/fit.contrast.Rd:
	  - Fixed a typo in the example - Added to lme example

2003-03-08 11:45  warnes

	* tests/: fit.contrast.Rout~, fit.contrast.R~: - Removed trash
	  files from repository.

2003-03-08 11:30  warnes

	* man/balloonplot.Rd:
	  - Forgot to update arglist in \usage section.

2003-03-08 11:26  warnes

	* DESCRIPTION:
	  - Bumped up version number.

2003-03-08 11:22  warnes

	* R/balloonplot.R, man/balloonplot.Rd:
	  - Added parameters for rotation of and amount of space allocated
	  for	the row and column labels.

2003-03-07 10:48  warnes

	* DESCRIPTION, R/RSCompat.S, R/factorial.R, R/fast.prcomp.R,
	  R/hist2d.R, R/qqnorm.aov.R:
	  - Minor changes to code to allow the package to be provided as an
	  S-Plus chapter.

2003-03-07 10:43  warnes

	* R/lowess.R: - Add 'NULL' as the last element of if statement that
	  defines   lowess.default so that when the file is sourced, S-Plus
	  doesn't   display the function definition.

2003-03-07 10:41  warnes

	* R/lowess.R:
	  - Specify where the defualt lowess function should be found.	-
	  Use getFunction in S-Plus instead of 'get'

2003-03-03 12:48  warnes

	* man/reorder.Rd: - Updated to match reorder.Rd which was exetended
	  to handle factor   label names in addition to numeric indices.

2003-03-03 12:24  warnes

	* R/reorder.R:
	  - Added handling of factor level names in addition to numeric
	  indexes.

2003-01-30 17:04  warnes

	* man/contrast.lm.Rd:
	  - fixed typo

2003-01-30 17:00  warnes

	* DESCRIPTION:
	  - New release.

2003-01-30 16:58  warnes

	* tests/contrast.lm.Rout.save:
	  - Renamed to/replaced by fit.contrast.Rout.save.

2003-01-30 16:57  warnes

	* tests/contrast.lm.R: - Renamed to/replaced by fit.contrasts.R

2003-01-30 16:56  warnes

	* man/running.Rd: - Fixed typo in email address.

2003-01-30 16:54  warnes

	* tests/: CrossTable.R, CrossTable.Rout.save, fit.contrast.R,
	  fit.contrast.Rout.save, fit.contrast.Rout~, fit.contrast.R~,
	  make.contrasts.R, make.contrasts.Rout.save:
	  - Updated tests to match changes in contrast.lm() ->
	  fit,contrasts(),   and CrossTable().

2003-01-30 16:53  warnes

	* R/fit.contrast.R, R/contrast.lm.R, man/contrast.lm.Rd,
	  man/fit.contrast.Rd:
	  - Renamed 'contrast.lm' to 'fit.contrast'.  This new name is more
	    descriptive and makes it easier to create and use methods for
	  other   classes, eg lme.

	  - Enabled fit.contrast for lme object now that Doug Bates has
	  provided   the necessary support for contrasts in the nlme
	  package.

	  - New contrast.lm function which generates a 'depreciated'
	  warning and	calls fit.contrast

	  - Updated help text to match changes.

2003-01-30 16:43  warnes

	* R/barplot2.R, man/barplot2.Rd:
	  - Added argument 'add' to allow for the addition of a barplot to
	  an   existing graphic. Default is FALSE

2003-01-30 16:41  warnes

	* R/CrossTable.R, man/CrossTable.Rd:
	  - Removed argument 'correct' and now print separate corrected
	  values   for 2 x 2 tables.  - Added arguments 'prop.r', 'prop.c'
	  and 'prop.t' to toggle printing   of row, col and table
	  percentages. Default is TRUE.  - Added argument 'fisher' to
	  toggle fisher exact test. Default is	 FALSE.  - Added McNemar
	  test to statistics and argument 'mcnemar' to toggle	test.
	  Default is FALSE.  - Added code to generate an invisible return
	  list containing table   counts, proportions and the results of
	  the appropriate statistical tests.

2003-01-30 09:58  warnes

	* R/make.contrasts.R:
	  - Added explicit check to ensure that the number of specified
	  contrasts is less than or equal to the ncol - 1.  Previously,
	  this	 failed with an obtuse error message when the contrast
	  matrix had row   names, and silently dropped contrasts over
	  ncol-1.

2003-01-20 13:35  warnes

	* R/balloonplot.R, man/balloonplot.Rd:
	  - Updated balloonplot help page.

2003-01-20 12:13  warnes

	* R/wapply.R, man/wapply.Rd:
	  - Updated wapply.R to allow specification of evaluation points
	  when	 method is 'width' or 'range' using the 'pts' argument.  -
	  Updated wapply.Rd to add 'pts' argument - Fixed typos, spelling
	  errors, gramatical errors and lack of clarity   in wapply.Rd help
	  text.

2003-01-03 16:34  warnes

	* R/balloonplot.R, man/balloonplot.Rd: - Initial checkin of
	  balloonplot functions and documentation.

2003-01-03 14:23  warnes

	* man/space.Rd: - Added reference to and comparison example of
	  sunflowerplot.  - Added code to put example plots on same plot
	  window using par(mfrow=...).

2003-01-03 14:02  warnes

	* man/contrast.lm.Rd:
	  - Removed duplicate assigment from aov example.

2003-01-02 11:11  warnes

	* DESCRIPTION: Updated version number and added Kjetil to list of
	  contributors.

2003-01-02 11:09  warnes

	* R/barplot2.R:
	  - Changed assignment statements that used "=" to "<-" to avoid
	  syntax   errors in older versions of the S language.

2003-01-02 11:07  warnes

	* R/lowess.R:
	  - Added wrapper code so that R-specific fiddling won't be
	  executed   under S-Plus.

2003-01-02 11:04  warnes

	* R/contrast.lm.R:
	  - Now will run on objects of class aov (but not aovlist!)

2003-01-02 10:42  warnes

	* R/RSCompat.S: - Add nlevels function.

2003-01-02 10:40  warnes

	* R/qqnorm.aov.R, man/qqnorm.aov.Rd: - Renamed first parameter to
	  match qqnorm generic.

2003-01-02 10:14  warnes

	* man/qqnorm.aov.Rd: Added additional help text from Kjeitl.

2002-12-31 14:50  warnes

	* R/qqnorm.aov.R, man/qqnorm.aov.Rd: Initial checkin of qqnorm.aov
	  function and documentation submitted by Kjetil Halvorsen
	  <kjetilh@jupiter.umsanet.edu.bo>.

2002-11-04 09:36  warnes

	* R/zzz.R:
	  - Oops, re-instated 'require(MASS)' in .First.lib() so that MASS
	  gets	 loaded.  (Just stating a dependency in DESCRIPTION doesn't
	  actually   load the library!)

2002-11-04 09:24  warnes

	* DESCRIPTION, R/zzz.R: - Added dependency on R >= 1.6.0 due to
	  code in barplot2() - Since MASS is now a dependency in
	  DESCRIPTION, I removed the now   redundant check for MASS in
	  .First.lib().

2002-11-04 09:21  warnes

	* R/barplot2.R, man/barplot2.Rd: Updates from Marc Schwartz:

	  - Updated underlying code to be based upon the new barplot() in R
	  v1.6.1 - This now uses the 'axis.lty' and 'border' arguments - In
	  R v1.6.0, R Core introduced a new function called axTicks().
	  This is an R equivalent of the C code for CreateAtVector in
	  plot.c.    This now enables me to get the axis tick mark
	  positions consistently    when the 'height' related axis is
	  either linear or log.  Thus, I can	now have consistent tick
	  marks and can plot grid lines in either    situation.  If
	  'plot.grid = TRUE' and 'grid.inc' is specified, then	  I still
	  use pretty() to determine the tick marks and lines.  - This code
	  now depends on R 1.6.0 or later.

2002-11-04 09:13  warnes

	* R/CrossTable.R:
	  - Moved fisher.test() to after table is printed, so that table is
	  still printed in the event that fisher.test() results in
	  errors.

2002-10-30 13:07  warnes

	* tests/: fast.prcomp.R, make.contrasts.R:
	  - Added test code for fast.prcomp, fast.svd, and make.contrasts.

2002-10-29 21:32  warnes

	* DESCRIPTION:
	  Updated version number for 2002-10-29 release.

2002-10-29 21:31  warnes

	* tests/contrast.lm.R:
	  - changes in whitespace

2002-10-29 21:23  warnes

	* man/undocumented.Rd:
	  - Commented out plot.lm documentation - Removed make.contrasts
	  documentation, which is now properly	 documented in
	  man/make.contrasts.Rd

2002-10-29 21:21  warnes

	* R/plot.lm.R:
	  - Commented out plot.lm() code since recent changes in R have
	  broken it.

2002-10-29 18:06  warnes

	* R/fast.prcomp.R, man/fast.prcomp.Rd:
	  - Fixes to fast.svd to make it actually work.  - Updates to man
	  page to fix mistmatches between code and docs and to	 fix
	  warnings.

2002-10-29 18:00  warnes

	* R/contrast.lm.R, R/make.contrasts.R, man/contrast.lm.Rd,
	  man/make.contrasts.Rd:
	  - Moved make.contrasts to a separate file.  - Enhanced make
	  contrasts to better label contrast matrix, to give   how.many a
	  default value, and to coerce vectors into row matrixes.  - Added
	  help page for make.contrasts.  - Added link from contrasts.lm
	  seealso to make.contrasts.

2002-10-29 17:54  warnes

	* tests/: CrossTable.Rout.save, aggregate.table.Rout.save,
	  bandplot.Rout.save, barplot2.Rout.save, boxplot.n.Rout.save,
	  ci.Rout.save, combinations.Rout.save, combine.Rout.save,
	  contrast.lm.Rout.save, dirichlet.Rout.save, estimable.Rout.save,
	  factorial.Rout.save, glh.test.Rout.save, hist2d.Rout.save,
	  interleave.Rout.save, lowess.Rout.save, make.contrasts.Rout.save,
	  nobs.Rout.save, plotCI.Rout.save, plotmeans.Rout.save,
	  quantcut.Rout.save, rename.vars.Rout.save, reorder.Rout.save,
	  running.Rout.save, space.Rout.save, wapply.Rout.save:
	  - Added tests for dirichlet and  make.contrasts.  - Updated
	  everything to match reduced warning message now that plot.lm is
	  not	being overloaded.

2002-10-29 14:55  warnes

	* R/contrast.lm.R, man/contrast.lm.Rd:
	  - Fix bug that prevented contrast.lm() from working on 'aov'
	  objects - Add 'aov' examples to documentation for contrast.lm -
	  Added note about future support for contrast.lme.

2002-10-29 14:29  warnes

	* R/fast.prcomp.R, man/fast.prcomp.Rd: Initial checkin for
	  fast.prcomp() and fast.svd().

2002-10-11 14:38  warnes

	* DESCRIPTION, tests/dirichlet.R:
	  - Updated version number in DESCRIPTION.

2002-10-11 14:22  warnes

	* R/permute.R, man/permute.Rd:
	  - Add permute() function (wraper for sample) and man page

2002-10-11 14:21  warnes

	* man/dirichlet.Rd:
	  - Escaped underscores in my email address that was causing a
	  parse   error in the {r,p}dirichlet man page.

2002-10-11 14:02  warnes

	* R/barplot2.R:
	  - Fixed log scale errors in legend() call

2002-10-01 14:16  warnes

	* man/hist2d.Rd:
	  - Added examples of using 'contour' and 'filled.contour' for
	  display.

2002-09-30 16:45  warnes

	* DESCRIPTION:
	  - Updated version number after adding rdirichlet() and
	  ddirichlet()

2002-09-30 16:43  warnes

	* R/dirichlet.R, man/dirichlet.Rd, tests/dirichlet.R:
	  - Added rdirichlet() and ddirichlet() with accompaning help page
	  and tests.

2002-09-26 08:11  warnes

	* man/glh.test.Rd: - Added note and example code to illustrate how
	  to properly compute	contrasts for the first factor in the
	  model.

2002-09-24 16:20  warnes

	* DESCRIPTION:
	  Update version number after fixing bugs and adding regression
	  tests.

2002-09-24 16:18  warnes

	* tests/: CrossTable.R, CrossTable.Rout.save, aggregate.table.R,
	  aggregate.table.Rout.save, bandplot.R, bandplot.Rout.save,
	  barplot2.R, barplot2.Rout.save, boxplot.n.R, boxplot.n.Rout.save,
	  ci.R, ci.Rout.save, combinations.R, combinations.Rout.save,
	  combine.R, combine.Rout.save, contrast.lm.R,
	  contrast.lm.Rout.save, estimable.R, estimable.Rout.save,
	  factorial.R, factorial.Rout.save, glh.test.R, glh.test.Rout.save,
	  hist2d.R, hist2d.Rout.save, interleave.R, interleave.Rout.save,
	  lowess.R, lowess.Rout.save, nobs.R, nobs.Rout.save, plotCI.R,
	  plotCI.Rout.save, plotmeans.R, plotmeans.Rout.save, quantcut.R,
	  quantcut.Rout.save, rename.vars.R, rename.vars.Rout.save,
	  reorder.R, reorder.Rout.save, running.R, running.Rout.save,
	  space.R, space.Rout.save, wapply.R, wapply.Rout.save:
	  - Added regression test.

2002-09-24 15:12  warnes

	* R/glh.test.R:
	  - Fixed a typo.

2002-09-24 11:55  warnes

	* R/contrast.lm.R:
	  - Add ability to show confidence intervals when showall=TRUE.

2002-09-24 11:01  warnes

	* DESCRIPTION:
	  Updated to version 0.6.1, corresponding to some bug fixes.

2002-09-24 10:57  warnes

	* R/running.R:
	  - Fixed error where running was always calling running2 with
	  'fun=mean', ignoring the specified funtion.

2002-09-24 10:53  warnes

	* R/plotmeans.R:
	  - Changed digits=options("digits") which produces a list of
	  length 1   to digits=getOption("digits") which returns a vector
	  of length one.    The former was causing an error when passed to
	  round().

2002-09-23 10:27  warnes

	* man/: CrossTable.Rd, barplot2.Rd, glh.test.Rd:
	  - Fixed syntax errors in barplot2.Rd and CrossTable.Rd - Fixed
	  incorrect translation of 'F' (distribution) to 'FALSE' in
	  glh.test.Rd

2002-09-23 10:02  warnes

	* inst/doc/: Rnews.dtx, Rnews.sty, gregmisc.pdf, gregmisc.tex:
	  Added inst/doc directory and contents to CVS.

2002-09-23 09:59  warnes

	* R/aggregate.table.R, R/boxplot.n.R, R/ci.R, R/combine.R,
	  R/factorial.R, R/hist2d.R, R/interleave.R, R/lowess.R, R/nobs.R,
	  R/residplot.R, R/zzz.R, man/aggregate.table.Rd, man/bandplot.Rd,
	  man/combinations.Rd, man/combine.Rd, man/contrast.lm.Rd,
	  man/estimable.Rd, man/factorial.Rd, man/glh.test.Rd,
	  man/hist2d.Rd, man/interleave.Rd, man/lowess.Rd, man/nobs.Rd,
	  man/plotCI.Rd, man/quantcut.Rd, man/rename.vars.Rd,
	  man/reorder.Rd, man/space.Rd, man/undocumented.Rd: - Modified all
	  files to include CVS Id and Log tags.

2002-09-23 09:38  warnes

	* DESCRIPTION, R/CrossTable.R, R/barplot2.R, R/combinations.R,
	  man/CrossTable.Rd, man/barplot2.Rd:
	  - Added CrossTable() and barplot2() code and docs contributed by
	  Marc Schwartz.  - Permit combinations() to be used when r>n
	  provided repeat.allowed=TRUE - Bumped up version number

2002-08-01 15:37  warnes

	* DESCRIPTION, R/ci.R, R/contrast.lm.R, R/hist2d.R, R/running.R,
	  R/wapply.R, man/ci.Rd, man/contrast.lm.Rd, man/estimable.Rd,
	  man/glh.test.Rd:
	  - Corrected documentation mismatch for ci, ci.default.

	  - Replaced all occurences of '_' for assignment with '<-'.

	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with	 the spelled out version.

	  - Updaded version number and date.

2002-08-01 14:06  warnes

	* R/reorder.R:
	  Added reorder() function to reorder the levels of a factor.

2002-04-15 17:30  warneg

	* man/contrast.lm.Rd: - Separated out, then commented out mention
	  of contrast.lme and lme   objects.  The contrast.lme function
	  will become part of Bates and   Pinhiero's next NLME library.

2002-04-15 17:28  warneg

	* R/contrast.lm.R: - Separated out, then commented out contrast.lme
	  code.  The   contrast.lme function will become part of Bates and
	  Pinhiero's NLME   library.

2002-04-08 20:51  warneg

	* DESCRIPTION, R/bandplot.R, R/boxplot.n.R, R/ci.R,
	  R/combinations.R, R/contrast.lm.R, R/estimable.R, R/glh.test.R,
	  R/hist2d.R, R/plot.lm.R, R/plotCI.R, R/plotmeans.R,
	  R/rename.vars.R, R/residplot.R, R/space.R, R/wapply.R,
	  man/aggregate.table.Rd, man/bandplot.Rd, man/boxplot.n.Rd,
	  man/combinations.Rd, man/glh.test.Rd, man/hist2d.Rd,
	  man/interleave.Rd, man/plotmeans.Rd, man/reorder.Rd,
	  man/running.Rd, man/space.Rd, man/undocumented.Rd, man/wapply.Rd:

	  Checkin for version 0.5.3

2002-04-08 20:46  warneg

	* R/interleave.R: - Properly handle case when some or all arguments
	  are vectors.

2002-04-05 13:27  warneg

	* man/contrast.lm.Rd:
	  - Noted that contrats.lm can be applied to lme objects.  -
	  Clarified return value when conf.int is specified.

2002-04-05 13:23  warneg

	* R/contrast.lm.R:
	  - Updated contrast.lm to handle lme objects - Modified
	  contrast.lm to compute confidence intervals even when   showall
	  is true.  - Added check and warning if conf.int is outside (0,1).
	  This will ensuere   that conf.int=T does not cause nonsense
	  results.

2002-03-27 15:51  warneg

	* man/lowess.Rd:
	  Added "..." argument to lowess.default.

2002-03-27 14:48  warneg

	* R/lowess.R: - Added code to append "..." to the argument list of
	  lowess.default.

	  - Fixed a wrong default for f in lowess.formula.  Was 3, but
	  should   have been 2/3.

2002-03-26 16:22  warneg

	* R/ci.R, R/glh.test.R, R/lowess.R, man/ci.Rd, man/glh.test.Rd,
	  man/lowess.Rd, man/reorder.Rd, man/undocumented.Rd:
	  - Changed methods to include '...' to match the generic.  -
	  Updated for version 0.5.1

2002-03-26 16:21  warneg

	* DESCRIPTION:
	  Updated for version 0.5.1

2002-03-26 16:04  warneg

	* INDEX:
	  Index is now auto-generated. The presence of a file named INDEX
	  prevents that.

2002-03-26 14:29  warneg

	* R/nobs.R:
	  Added ... to methods.

2002-03-26 14:29  warneg

	* man/nobs.Rd:
	  Updated to add ... parameter to function calls.

2002-03-26 14:24  warneg

	* man/hist2d.Rd:
	  Initial checkin.

2002-03-26 10:30  warneg

	* man/glh.test.Rd: Removed incorrect link to 'contrast' from
	  seealso.

2002-03-26 10:27  warneg

	* man/reorder.Rd:
	  Initial checkin.

2002-03-26 09:49  warneg

	* man/quantcut.Rd:
	  Initial Checkin

2002-03-26 09:29  warneg

	* R/quantcut.R:
	  Initial checkin.

2002-03-26 09:28  warneg

	* R/nobs.R: - Added CVS tags

2002-03-19 23:17  warneg

	* R/plotmeans.R: - Changes to add compatibility with S-Plus 2000

2002-03-19 23:16  warneg

	* R/plotCI.R: - Changes to add compatibility with S-Plus 2000.

2002-03-19 22:48  warneg

	* R/boxplot.n.R:
	  - Updated to work in S-Plus 2000 as well as R.

2002-03-19 22:44  warneg

	* R/RSCompat.S: - Added definition of is.R function.

	  - Added boxplot.formula

2002-03-07 18:39  warneg

	* man/running.Rd: - Added documentation and example for running2

2002-03-07 18:38  warneg

	* R/running.R:
	  - Added "running2", which handles both univariate and bivariate
	  cases - Modified "running" to call "running2"

2002-03-05 11:44  warneg

	* R/plotmeans.R: - Replace "T" with "TRUE".  Problems arrive when
	  there is a variable named "T".

2002-02-21 16:45  warneg

	* R/aggregate.table.R:
	  - Fixed bug where row and column labels didn't always correspond
	  to the contents.  This only occured when a factor was used for
	  by1 or by2 and the factors levels weren't in the default sort
	  order.

2002-02-20 17:10  warneg

	* R/aggregate.table.R:
	  New function.

2002-02-20 17:09  warneg

	* man/aggregate.table.Rd:
	  Initial checkin.

2002-02-20 16:41  warneg

	* man/interleave.Rd, R/interleave.R: Initial checkin.

2002-02-20 16:31  warneg

	* man/nobs.Rd:
	  Noted that specialized methods exist.

2002-02-20 16:29  warneg

	* man/nobs.Rd:
	  Incorrectly had contents of nobs.R here instead of help text.
	  Corrected.

2002-02-20 15:09  warneg

	* man/: ci.Rd, estimable.Rd, glh.test.Rd, lowess.Rd, plotCI.Rd,
	  rename.vars.Rd, space.Rd, undocumented.Rd:
	  Minor changes, typo and formatting fixes.

2002-02-20 15:08  warneg

	* INDEX:
	  Updated.

2002-02-20 15:06  warneg

	* R/bandplot.R, man/bandplot.Rd:
	  - Generalized to allow specification of the multiples of the
	  standard deviation levels to be plotted (0=mean, 1=1 sd, ..).  -
	  Now (invisibly) returnes computed smooths.

2002-02-20 15:03  warneg

	* R/nobs.R, man/nobs.Rd: - initial checkin.

2002-02-16 13:16  warneg

	* man/bandplot.Rd:
	  Added bandplot documentation.

2002-02-16 12:58  warneg

	* R/wapply.R:
	  - Fixed Bug: When method=="range", the absolute range of x was
	  being   used to compute the relative width instead of the
	  (correct) relative   range.

2002-02-16 12:23  warneg

	* R/wapply.R:
	  - Corrected problem removing missing values: The missing values
	  of $x   and $y were being removed indepdendently, leaving an
	  uneven number   of points in the result.

2002-02-04 21:20  warneg

	* R/RSCompat.S:
	  - Fix typo that caused code meant to run only under S-Plus to run
	  under R, causing problems.

2002-02-04 21:19  warneg

	* R/zzz.R:
	  - Remove dead code

2002-02-04 18:20  warneg

	* R/space.R:
	  - Add na.rm parameter and make the default TRUE.

2002-02-04 18:19  warneg

	* R/hist2d.R:
	  Initial checkin.

2002-02-04 14:12  warneg

	* R/plotCI.R:
	  - When err="x", 'col' was being used to plot bars, rather than
	  'barcol'.

2002-02-04 14:09  warneg

	* R/plotCI.R:
	  - fixed typo, when err="x", lty was 'slty' causing an error.

2002-01-25 18:00  warneg

	* R/iapply.R:
	  I can't remember what this function was written for, nor can I
	  find any examples of using it. Consequently, I'm deleting it.

2002-01-17 18:51  warneg

	* man/estimable.Rd:
	  - Fixed errror in last example by adding 'conf.int' parameter to
	  'estimable' call.

2002-01-17 18:42  warneg

	* R/glh.test.R:
	  - Fixed typo in code that resulted in an syntax error.

2002-01-17 18:21  warneg

	* man/elementof.Rd:
	  Removed: duplicated built-in %in% operator.

2002-01-17 18:21  warneg

	* R/elementof.R:
	  Removed: duplicates the built-in %in% operator.

2002-01-10 12:35  warneg

	* R/glh.test.R:
	  - print.glh.test() was using cat() to printing the call.  This
	  didn't work and generated an error.

2001-12-19 17:45  warneg

	* R/RSCompat.S: - Added code for %in%.

2001-12-19 15:06  warneg

	* man/glh.test.Rd:
	  - Fixed display of formulae.	- Added description of return value

2001-12-19 15:05  warneg

	* R/glh.test.R:
	  - Removed extra element of return object.

2001-12-18 17:14  warneg

	* man/estimable.Rd:
	  - Updated documentation to reflect change of parameters from
	  'alpha'   to 'conf.int', including the new optional status of the
	  confidence   intervals.

2001-12-18 17:12  warneg

	* R/estimable.R:
	  - Modified to make confidence intervals optional.  Changed
	  'alpha'   parameter giving significance level to 'conf.int'
	  giving confidence   level.

2001-12-18 16:36  warneg

	* man/glh.test.Rd:
	  - Added summary.glh.test to alias, usage, and example sections.

2001-12-18 16:34  warneg

	* R/glh.test.R: - Modified to work correctly when obj is of class
	  'aov' by specifying	summary.lm instead of summary.	This
	  ensures that the summary object   has the fields we need.

	  - Moved detailed reporting of results from 'print' to 'summary'
	  function and added a simpler report to 'print'

2001-12-18 16:27  warneg

	* R/estimable.R:
	  - Modified to work correctly when obj is of class 'aov' by
	  specifying   summary.lm instead of summary.  This ensures that
	  the summary object   has the fields we need.

2001-12-17 19:43  warneg

	* R/glh.test.R, man/glh.test.Rd:
	  Initial checkin.

2001-12-17 14:13  warneg

	* DESCRIPTION, INDEX:
	  Updated to include new functions and thier contributors.

2001-12-17 13:59  warneg

	* man/estimable.Rd:
	  - Fixed spelling errors.

2001-12-17 13:52  warneg

	* man/estimable.Rd:
	  - Fixed the link to contrasts.lm.  - Rephrased title/description
	  to be more clear.

2001-12-11 20:41  warneg

	* man/space.Rd:
	  - Quoted underscore character in my email address.  - Added
	  correct keyword.

2001-12-11 20:39  warneg

	* man/rename.vars.Rd:
	  Added omitted documentaton for 'info' parameter.  Changed example
	  code not to use 'Orthodont' data set so that the nlme package is
	  not required.

2001-12-11 20:37  warneg

	* man/plotmeans.Rd:
	  Added documentation for xaxt parameter.

2001-12-11 20:36  warneg

	* man/undocumented.Rd:
	  Initial checkin.

2001-12-11 20:34  warneg

	* R/lowess.R:
	  Updated to explicitly list control arguments to lowess.formula.

2001-12-11 20:34  warneg

	* man/lowess.Rd:
	  Initial checkin.  Code copied from R source package and extended.

2001-12-10 14:38  warneg

	* man/: contrast.factor.Rd, contrast.lm.Rd: renamed
	  contrast.factor.Rd back to contrast.lm.Rd corresponding to rename
	  of function.

2001-12-10 14:35  warneg

	* man/: estimable.Rd, contrast.coeff.Rd: Renamed
	  'contrsts.coeff.Rd' to 'estimable.Rd' corresponding to function
	  rename.

2001-12-10 14:29  warneg

	* R/contrast.lm.R: incorrectly put contrast.coeff.R (now
	  estimable.R) here.  Now correctly put contrast.factor.R back here

2001-12-10 14:27  warneg

	* R/contrast.factor.R: renamed contrast.factor.R back to
	  contrast.lm.R

2001-12-10 14:26  warneg

	* R/estimable.R: renamed from contrast.coeff.R to estimable.R
	  (incorrectly via contrast.lm.R)

2001-12-10 14:22  warneg

	* R/contrast.coeff.R: Renamed back to 'contrast.lm.R'

2001-12-10 14:20  warneg

	* R/contrast.lm.R: Renamed back to contrast.lm

2001-12-07 20:54  warneg

	* R/rename.vars.R: Changed 'T' to 'TRUE' in parameter list.

2001-12-07 18:53  warneg

	* man/contrast.factor.Rd:
	  Added documentation for 'conf.int' parameter.

2001-12-07 18:34  warneg

	* man/wapply.Rd:
	  Fixed an problem where \code was incorrectly delimited by parens
	  rather than curly brackets.

2001-12-07 18:33  warneg

	* man/rename.vars.Rd: - Fixed see also link.  Mis-typed
	  'data.frame' as 'dataframe'.

2001-12-07 17:56  warneg

	* man/elementof.Rd:
	  Added warning that this function is depreciated.

2001-12-07 17:55  warneg

	* R/rename.vars.R:
	  Added attribution.

2001-12-07 17:49  warneg

	* man/rename.vars.Rd:
	  Added proper attribution to Don MacQueen.

2001-12-07 17:33  warneg

	* R/: iapply.R, lowess.R, plot.lm.R, residplot.R:
	  Initial checkin.

2001-12-07 17:29  warneg

	* man/space.Rd, R/zzz.R:
	  Initial checkin.

2001-12-07 17:24  warneg

	* R/space.R:
	  - Added cvs tags.

2001-12-07 17:23  warneg

	* R/space.R:
	  - Leave first point at center, rather than shifting by s/2 to the
	  left.  This looks better when there are more than 2 'spaced'
	  points.

2001-12-07 16:48  warneg

	* man/rename.vars.Rd:
	  Initial checkin.  Unfortunately, I've lost the email of the
	  person who sent this to me.  I'll credit him/her when I find out
	  who it was!

2001-12-07 16:40  warneg

	* R/rename.vars.R:
	  Initial checkin

2001-12-07 16:06  warneg

	* R/elementof.R:
	  - elementof duplicates '%in%'.  Code now uses '%in%' and issues a
	  warning.

2001-12-07 15:59  warneg

	* man/factorial.Rd, R/factorial.R:
	  Initial checkin.

2001-12-07 15:39  warneg

	* man/contrast.coeff.Rd:
	  - Initial checkin

2001-12-07 15:32  warneg

	* R/contrast.coeff.R: - If cm is not matrix, coerce it into a
	  single-row matrix.

2001-12-07 15:07  warneg

	* R/contrast.coeff.R:
	  Substantial enhancements to initial version:

	   - Added StdErr, t-value, p-value, and DF columns to output.
	   - Modified to use t distribution rather than normal distribution
	  for
	     confidence intervals.

2001-12-07 15:04  warneg

	* R/contrast.coeff.R: Initial checkin.

2001-12-07 14:57  warneg

	* man/contrast.factor.Rd:
	  Renamed 'contrast.lm.Rd' to 'contrast.factor.Rd'.

2001-12-07 14:53  warneg

	* R/contrast.factor.R: Renamed 'contrast.lm.R' to
	  'contrast.factor.R' to highlight that this function only works on
	  individual factors.

2001-12-07 14:50  warneg

	* man/ci.Rd: - Added text noting that lme is now supported.

2001-12-07 14:19  warneg

	* R/ci.R: - Fixed typo:  DF column was being filled in with
	  p-value.

2001-12-07 13:49  warneg

	* R/ci.R: - Added ci.lme method to handle lme objects.

2001-12-05 14:51  warneg

	* R/: combine.R, concat.R:
	  - Renamed 'concat' function to 'combine' to avoid name conflict
	  with	 an existing S-Plus function.

2001-12-05 14:49  warneg

	* R/plotmeans.R: - Added ability to use the t-distribution to
	  compute confidence   intervals.  This is controlled using the
	  'use.t' parameter.

2001-12-05 14:44  warneg

	* man/: combine.Rd, concat.Rd:
	  - Changed function name 'concat' to 'combine' and renamed
	  concat.Rd to	 combine.Rd

2001-12-05 14:41  warneg

	* man/plotmeans.Rd: - Added documentation of use.t parameter.

2001-12-05 14:36  warneg

	* man/wapply.Rd:  - Clarified how the width of the window is
	  computed when method="nobs".

2001-12-05 14:29  warneg

	* R/wapply.R:
	  - Added a better default for "width" when method="nobs".  For
	  this case,   width=max(5, length(x)/10).

	  - Allow omission of x values which result in missing y values via
	    'drop.na' parameter.

2001-11-13 16:19  warneg

	* R/contrast.lm.R: - Fixed error that occured when a factor has 2
	  levels and only one	contrast is specified

2001-10-25 22:48  warneg

	* R/plotmeans.R:
	  Added correct handling of 'xaxt="n"'.

2001-10-16 19:14  warneg

	* man/: ci.Rd, wapply.Rd:
	  Fixed unbalanced brace.

2001-10-16 19:06  warneg

	* man/plotCI.Rd:
	  Added minbar and maxbar parameters.

2001-10-16 19:04  warneg

	* man/plotmeans.Rd:
	  Forgot to add minbar and maxbar to usage section.

2001-10-16 19:03  warneg

	* man/plotmeans.Rd:
	  Added description of minbar and maxbar.

2001-10-16 19:00  warneg

	* R/plotCI.R:
	  - Added minbar and maxbar parameters - Added cvs id and log tags
	  to header

2001-10-16 18:59  warneg

	* R/plotmeans.R:
	  Added cvs id and log tag to file header

2001-10-16 18:57  warneg

	* R/plotmeans.R:
	  Added minbar and maxbar parameters.

2001-10-16 18:35  warneg

	* man/plotmeans.Rd:
	  Added description of minsd parameter.

2001-10-16 18:35  warneg

	* R/plotmeans.R: Added minsd parameter.

2001-09-18 10:15  warneg

	* DESCRIPTION, R/RSCompat.S, R/plotCI.R, R/plotmeans.R:
	  Release 0.3.2

2001-09-18 10:14  warneg

	* R/contrast.lm.R:
	  Fixed bug in make.contrasts.	There was leftover code expecting a
	  parameter 'x' which is no lonber provided.

2001-09-01 15:19  warneg

	* R/RSCompat.S:
	  Initial checkin.

2001-08-31 20:01  warneg

	* DESCRIPTION, INDEX, R/running.R, man/contrast.lm.Rd,
	  man/running.Rd, man/wapply.Rd: Release 0.3.0

2001-08-31 19:45  warneg

	* R/wapply.R: Used wrong character in header (% instead of #).
	  Fixed.

2001-08-31 19:43  warneg

	* R/elementof.R:
	  Used wrong comment character in header (% instead of #). Fixed.

2001-08-31 19:41  warneg

	* R/bandplot.R:
	  Used wrong comment character (% instead of #) in header.  Fixed.

2001-08-31 19:36  warneg

	* R/contrast.lm.R:
	  Added make.contrasts() to allow S-Plus so that the remaining
	  unspecified df for contrats are filled by contrasts orthogonal to
	  the specified ones.  This results in getting the exact same value
	  from computing contrasts in a one-way anova as would be obtained
	  by directly computing the means and performing the approprial
	  linalg.

2001-08-31 16:55  warneg

	* man/contrast.lm.Rd:
	  Updated to match changes in contrast.lm.R version 1.2.

	  Also added more examples.

2001-08-31 16:46  warneg

	* R/contrast.lm.R: Previous version did not actually work.  This
	  version now correctly computes contrasts.  It will also (in
	  conjunction wiht RSCompat.S) work in S-Plus.

2001-08-30 22:25  warneg

	* R/contrast.lm.R: Initial checkin.

2001-08-25 01:54  warneg

	* R/elementof.R: Initial CVS Checkin.

2001-08-25 01:53  warneg

	* R/running.R: Initial CVS checkin.

2001-08-25 01:52  warneg

	* man/ci.Rd: - Added CVS header.  - Added my email address.

2001-08-25 01:50  warneg

	* man/combinations.Rd: Fixed a typo and a syntax error.

2001-08-25 01:48  warneg

	* R/wapply.R: Initial checkin.

2001-08-25 01:46  warneg

	* man/: boxplot.n.Rd, plotmeans.Rd: Added CVS header.

2001-08-25 01:45  warneg

	* man/wapply.Rd: Initial Checkin

2001-08-24 23:59  warneg

	* man/running.Rd: Initial Checkin

2001-08-24 22:16  warneg

	* man/elementof.Rd: Initial checkin.

2001-06-29 09:23  warneg

	* R/combinations.R, man/combinations.Rd:
	  Initial revision.

2001-06-05 14:39  warneg

	* DESCRIPTION, R/.tnatr:fnmap, R/concat.R, man/concat.Rd:
	  Updated with addition of concat.R and concat.Rd.

2001-05-30 09:23  warneg

	* DESCRIPTION, INDEX, R/.tnatr:fnmap, R/boxplot.n.R, R/ci.R,
	  R/plotCI.R, R/plotmeans.R, man/boxplot.n.Rd, man/ci.Rd,
	  man/plotCI.Rd, man/plotmeans.Rd:
	  Initial CVS import

2001-05-30 09:23  warneg

	* DESCRIPTION, INDEX, R/.tnatr:fnmap, R/boxplot.n.R, R/ci.R,
	  R/plotCI.R, R/plotmeans.R, man/boxplot.n.Rd, man/ci.Rd,
	  man/plotCI.Rd, man/plotmeans.Rd: Initial revision

